Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000727.1

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

106342 .. 106971

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000727.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggtgcggtgtcctcatgaaggctgtgagtctgaagtgagtattgatagctgtgaaacattcttggagcctaaacttgttcaggtcatgcgccaacgaatcaaggaatcttctattcctgttacagagaaagtttactgtccagatcccaagtgttctgcattgatgtcaaaaaatgatgtcttggaatatactaagaattattttgttgctgttgaacaatctggagtcaggttatgcatggaatgtcatcgctgtttttgtatcaattgcaaagttccattcgacaatcatacctgctatgactacaagaaatcaaatccttctgcagaagagcaattggtgaagtcactggctaaaaagaagcactggcgccagtgtgtgaactgcagccatatggttgaacttgcagaaggttgttaccacataacttgcagatgtggatatgagttttgctatacttgtggagctgaatggaaggacaagacaccaacatgttcctgcccaatctgggatgagtgcaacattatacgagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

179

Amino Acids

20.73

Weight (kDa)

6.31

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	372
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	373
AfiI	CCNNNNNNNGG	2 cut(s)	20, 511
AflIII	ACRYGT	1 cut(s)	494
AgsI	TTSAA	2 cut(s)	218, 404
AluBI	AGCT	2 cut(s)	51, 470
AluI	AGCT	2 cut(s)	51, 470
AlwI	GGATC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	390
AspLEI	GCGC	2 cut(s)	93, 375
AsuHPI	GGTGA	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	402
BfmI	CTRYAG	2 cut(s)	327, 388
BfoI	RGCGCY	1 cut(s)	376
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	69, 374
BpmI	CTGGAG	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 511
Bse1I	ACTGG	3 cut(s)	357, 374, 376
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	2 cut(s)	20, 511
BseNI	ACTGG	3 cut(s)	357, 374, 376
BseXI	GCAGC	1 cut(s)	402
BshNI	GGYRCC	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	20, 511
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	16
BspLI	GGNNCC	2 cut(s)	69, 374
BspMAI	CTGCAG	2 cut(s)	331, 392
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	140
BspQI	GCTCTTC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	372
BsrI	ACTGG	3 cut(s)	357, 374, 376
BssMI	GATC	1 cut(s)	145
BssNI	GRCGYC	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	373
BstDEI	CTNAG	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	520
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	93, 375
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	498
BstSFI	CTRYAG	2 cut(s)	327, 388
BstV1I	GCAGC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	3 cut(s)	350, 367, 383
BveI	ACCTGC	1 cut(s)	305
CciI	TCATGA	1 cut(s)	16
CfoI	GCGC	2 cut(s)	93, 375
CspCI	CAANNNNNGTGG	2 cut(s)	413, 448
CviAII	CATG	4 cut(s)	17, 88, 241, 495
CviJI	RGCY	6 cut(s)	24, 51, 70, 356, 393, 470
CviKI_1	RGCY	6 cut(s)	24, 51, 70, 356, 393, 470
DdeI	CTNAG	1 cut(s)	195
DinI	GGCGCC	1 cut(s)	374
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	54
EcoNI	CCTNNNNNAGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	242
EgeI	GGCGCC	1 cut(s)	374
EheI	GGCGCC	1 cut(s)	374
FaeI	CATG	4 cut(s)	20, 91, 244, 498
FatI	CATG	4 cut(s)	16, 87, 240, 494
FauNDI	CATATG	1 cut(s)	396
Fnu4HI	GCNGC	1 cut(s)	391
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	1 cut(s)	391
GlaI	GCGC	2 cut(s)	92, 374
GluI	GCNGC	1 cut(s)	391
GsuI	CTGGAG	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	376
HhaI	GCGC	2 cut(s)	93, 375
Hin1I	GRCGYC	1 cut(s)	373
Hin1II	CATG	4 cut(s)	20, 91, 244, 498
Hin6I	GCGC	2 cut(s)	91, 373
HinP1I	GCGC	2 cut(s)	91, 373
HinfI	GANTC	4 cut(s)	29, 99, 107, 228
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	136, 385
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	17, 143, 225
Hpy8I	GTNNAC	2 cut(s)	136, 385
HpyAV	CCTTC	4 cut(s)	14, 333, 407, 472
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	8 cut(s)	161, 240, 273, 329, 390, 410, 435, 522
HpyF3I	CTNAG	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	373
Hsp92II	CATG	4 cut(s)	20, 91, 244, 498
HspAI	GCGC	2 cut(s)	91, 373
KasI	GGCGCC	1 cut(s)	372
Kzo9I	GATC	1 cut(s)	145
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	67, 467
Lsp1109I	GCAGC	1 cut(s)	402
MaeIII	GTNAC	3 cut(s)	121, 348, 419
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	102, 344
MfeI	CAATTG	2 cut(s)	268, 338
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	3 cut(s)	199, 268, 338
Mly113I	GGCGCC	1 cut(s)	373
MlyI	GAGTC	2 cut(s)	38, 237
MnlI	CCTC	1 cut(s)	24
Mph1103I	ATGCAT	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	493
MunI	CAATTG	2 cut(s)	268, 338
NarI	GGCGCC	1 cut(s)	373
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	4 cut(s)	20, 91, 244, 498
NlaIV	GGNNCC	2 cut(s)	69, 374
NmuCI	GTSAC	1 cut(s)	348
NsiI	ATGCAT	1 cut(s)	242
NspI	RCATGY	1 cut(s)	498
PagI	TCATGA	1 cut(s)	16
PciI	ACATGT	1 cut(s)	494
PciSI	GCTCTTC	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	99, 107
PkrI	GCNGC	1 cut(s)	392
PleI	GAGTC	2 cut(s)	37, 236
PluTI	GGCGCC	1 cut(s)	376
PpsI	GAGTC	2 cut(s)	37, 236
PscI	ACATGT	1 cut(s)	494
PspN4I	GGNNCC	2 cut(s)	69, 374
PstI	CTGCAG	2 cut(s)	331, 392
PsuI	RGATCY	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	493
SapI	GCTCTTC	1 cut(s)	327
SatI	GCNGC	1 cut(s)	391
Sau3AI	GATC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	38, 237
SetI	ASST	6 cut(s)	53, 87, 236, 299, 418, 472
SfcI	CTRYAG	2 cut(s)	327, 388
SfoI	GGCGCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	493
Sse9I	AATT	3 cut(s)	199, 268, 338
SsiI	CCGC	1 cut(s)	7
SspDI	GGCGCC	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	1 cut(s)	285
TasI	AATT	3 cut(s)	199, 268, 338
TfiI	GAWTC	2 cut(s)	99, 107
TscAI	CASTG	3 cut(s)	357, 374, 383
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	1 cut(s)	390
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	33
TspRI	CASTG	3 cut(s)	357, 374, 383
XagI	CCTNNNNNAGG	1 cut(s)	18
XceI	RCATGY	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.