Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

14642600 .. 14644263

Gene Structure 1664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1152600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGTGTGAAGGAAACTTGTTTAATTTGTTTTGAAGACATTTCTGGTGATCGAATGTTTTCAATTGGTACTTGTGAACACAAATATTGCTTGCCTTGCATGAAACATCACGTCGAAATAAGTTGGCAAAATGGGATCGTGGCACAATGCCCTCATAAAGACTGTAAGTGCGAAGTGAATATCGATGGTTGTAAAAAATTCTTGTCGCCTGAACTAGCTGCTGTTATGATCGAAAGAATCAAGGAGTGTTCTATTCCTGTTACAGAGAAAGTTTACTGCCCATATCCAAGGTGTTCCGCACTAATGTCAAAACAGGAGGTCTTGGAACATACCAAGACTTCGTTTGTTGGTGAGGGAGGCAGGAAGTGCATGAAATGTAAACACTATTTCTGTATCAATTGCAAGGTTCCTTGGCACTATGATATGAGCTGCTACGATTGTCAGAGATCCGAAACATATTCCTGCGTAGAAGACCAATTGTTGAAATCACTTGCAACGAAGAAACTTTGGCGCCAGTGTTCGAAGTGCAATCATATGGTTGAACTTGATAGTGGTTGCTACCACATCACCTGCAGATGTGGACATCAATTTTGTTATACTTGTGGAGCTGAATGGAAGAACAAGCATGCAACATGTTCCTGCCCGATCTGGGACGAGCATTTTATTATACGGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

226

Amino Acids

26.04

Weight (kDa)

7.89

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	89 - 144	2.2e-10	IBR domain, a half RING-finger domain
IBR	PF01485	159 - 214	1.9e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	172 - 208	3.8e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	578
AccB1I	GGYRCC	1 cut(s)	510
AciI	CCGC	1 cut(s)	297
AclWI	GGATC	2 cut(s)	143, 441
AcoI	YGGCCR	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	511
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	649
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	4 cut(s)	35, 63, 484, 542
AjiI	CACGTC	1 cut(s)	112
AluBI	AGCT	3 cut(s)	218, 429, 608
AluI	AGCT	3 cut(s)	218, 429, 608
AlwI	GGATC	2 cut(s)	143, 441
AoxI	GGCC	1 cut(s)	671
ApeKI	GCWGC	2 cut(s)	218, 429
ApoI	RAATTY	1 cut(s)	197
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
Asp700I	GAANNNNTTC	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	513
AsuHPI	GGTGA	3 cut(s)	59, 362, 559
AsuII	TTCGAA	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	510
BbsI	GAAGAC	2 cut(s)	42, 477
BbvI	GCAGC	2 cut(s)	205, 416
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	658
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	571
BfoI	RGCGCY	1 cut(s)	514
BfuAI	ACCTGC	1 cut(s)	578
BisI	GCNGC	2 cut(s)	219, 430
BlsI	GCNGC	2 cut(s)	220, 431
BmgBI	CACGTC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	408, 512
BpiI	GAAGAC	2 cut(s)	42, 477
Bpu14I	TTCGAA	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	511
BsaJI	CCNNGG	2 cut(s)	287, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	649
Bse1I	ACTGG	1 cut(s)	514
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	287, 410
BseLI	CCNNNNNNNGG	1 cut(s)	649
BseNI	ACTGG	1 cut(s)	514
BseX3I	CGGCCG	1 cut(s)	671
BseXI	GCAGC	2 cut(s)	205, 416
Bsh1285I	CGRYCG	1 cut(s)	674
BshFI	GGCC	1 cut(s)	673
BshNI	GGYRCC	1 cut(s)	510
BshVI	ATCGAT	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	674
BslFI	GGGAC	1 cut(s)	665
BslI	CCNNNNNNNGG	1 cut(s)	649
BsmFI	GGGAC	1 cut(s)	665
BsnI	GGCC	1 cut(s)	673
Bsp119I	TTCGAA	1 cut(s)	521
Bsp143I	GATC	5 cut(s)	49, 135, 228, 446, 645
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	1 cut(s)	673
BspDI	ATCGAT	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	408, 512
BspMAI	CTGCAG	1 cut(s)	575
BspMI	ACCTGC	1 cut(s)	578
BspPI	GGATC	2 cut(s)	143, 441
BspT104I	TTCGAA	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	2 cut(s)	287, 410
BssMI	GATC	5 cut(s)	49, 135, 228, 446, 645
BssNI	GRCGYC	1 cut(s)	511
BssT1I	CCWWGG	2 cut(s)	287, 410
Bst4CI	ACNGT	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	511
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	92, 627
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	5 cut(s)	52, 138, 231, 449, 648
BstMBI	GATC	5 cut(s)	49, 135, 228, 446, 645
BstMCI	CGRYCG	1 cut(s)	674
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 366
BstNSI	RCATGY	2 cut(s)	629, 636
BstSFI	CTRYAG	1 cut(s)	571
BstV1I	GCAGC	2 cut(s)	205, 416
BstV2I	GAAGAC	2 cut(s)	42, 477
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BstZI	CGGCCG	1 cut(s)	671
Bsu15I	ATCGAT	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	673
BsuTUI	ATCGAT	1 cut(s)	183
BtrI	CACGTC	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	521
BveI	ACCTGC	1 cut(s)	578
Cac8I	GCNNGC	2 cut(s)	92, 627
CfoI	GCGC	1 cut(s)	513
ClaI	ATCGAT	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	4 cut(s)	100, 370, 626, 633
CviJI	RGCY	4 cut(s)	218, 429, 608, 673
CviKI_1	RGCY	4 cut(s)	218, 429, 608, 673
CviQI	GTAC	1 cut(s)	69
DinI	GGCGCC	1 cut(s)	512
DpnI	GATC	5 cut(s)	51, 137, 230, 448, 647
DpnII	GATC	5 cut(s)	49, 135, 228, 446, 645
EaeI	YGGCCR	1 cut(s)	671
EagI	CGGCCG	1 cut(s)	671
EclXI	CGGCCG	1 cut(s)	671
Eco130I	CCWWGG	2 cut(s)	287, 410
Eco52I	CGGCCG	1 cut(s)	671
EcoT14I	CCWWGG	2 cut(s)	287, 410
EgeI	GGCGCC	1 cut(s)	512
EheI	GGCGCC	1 cut(s)	512
ErhI	CCWWGG	2 cut(s)	287, 410
FaeI	CATG	4 cut(s)	103, 373, 629, 636
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	4 cut(s)	99, 369, 625, 632
FauNDI	CATATG	1 cut(s)	534
Fnu4HI	GCNGC	2 cut(s)	219, 430
Fsp4HI	GCNGC	2 cut(s)	219, 430
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	2 cut(s)	219, 430
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	1 cut(s)	673
HhaI	GCGC	1 cut(s)	513
Hin1I	GRCGYC	1 cut(s)	511
Hin1II	CATG	4 cut(s)	103, 373, 629, 636
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HinfI	GANTC	1 cut(s)	237
HphI	GGTGA	3 cut(s)	59, 362, 559
Hpy166II	GTNNAC	4 cut(s)	77, 274, 380, 581
Hpy188I	TCNGA	2 cut(s)	444, 451
Hpy8I	GTNNAC	4 cut(s)	77, 274, 380, 581
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	7 cut(s)	99, 369, 402, 494, 528, 573, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 366
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	511
Hsp92II	CATG	4 cut(s)	103, 373, 629, 636
HspAI	GCGC	1 cut(s)	511
KasI	GGCGCC	1 cut(s)	510
Kzo9I	GATC	5 cut(s)	49, 135, 228, 446, 645
LmnI	GCTCC	1 cut(s)	605
Lsp1109I	GCAGC	2 cut(s)	205, 416
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	5 cut(s)	51, 137, 230, 448, 647
MboI	GATC	5 cut(s)	49, 135, 228, 446, 645
MboII	GAAGA	4 cut(s)	47, 482, 511, 628
MfeI	CAATTG	3 cut(s)	63, 397, 476
MflI	RGATCY	1 cut(s)	446
MluCI	AATT	6 cut(s)	24, 63, 197, 397, 476, 587
Mly113I	GGCGCC	1 cut(s)	511
MnlI	CCTC	4 cut(s)	162, 310, 346, 350
MroXI	GAANNNNTTC	1 cut(s)	58
MseI	TTAA	1 cut(s)	23
MunI	CAATTG	3 cut(s)	63, 397, 476
MwoI	GCNNNNNNNGC	2 cut(s)	96, 366
NarI	GGCGCC	1 cut(s)	511
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	5 cut(s)	49, 135, 228, 446, 645
NlaIII	CATG	4 cut(s)	103, 373, 629, 636
NlaIV	GGNNCC	2 cut(s)	408, 512
NspI	RCATGY	2 cut(s)	629, 636
NspV	TTCGAA	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	629
PaqCI	CACCTGC	1 cut(s)	578
PciI	ACATGT	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	220, 431
PluTI	GGCGCC	1 cut(s)	514
PscI	ACATGT	1 cut(s)	632
PspN4I	GGNNCC	2 cut(s)	408, 512
PstI	CTGCAG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	2 cut(s)	219, 430
Sau3AI	GATC	5 cut(s)	49, 135, 228, 446, 645
SetI	ASST	8 cut(s)	114, 220, 293, 321, 408, 431, 572, 610
SfcI	CTRYAG	1 cut(s)	571
SfoI	GGCGCC	1 cut(s)	512
SfuI	TTCGAA	1 cut(s)	521
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	6 cut(s)	24, 63, 197, 397, 476, 587
SsiI	CCGC	1 cut(s)	297
SspDI	GGCGCC	1 cut(s)	510
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	287, 410
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	5 cut(s)	52, 114, 183, 231, 521
TasI	AATT	6 cut(s)	24, 63, 197, 397, 476, 587
TfiI	GAWTC	1 cut(s)	237
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	521
TseI	GCWGC	2 cut(s)	218, 429
TspDTI	ATGAA	2 cut(s)	116, 386
TspRI	CASTG	1 cut(s)	521
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	2 cut(s)	629, 636
XmnI	GAANNNNTTC	1 cut(s)	58
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.