Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

8408561 .. 8410495

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G115600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAACCCATCGAGAGGCCTCGTCACCTCCGCCTTCATTATCATCAAGGGCTTTGGGGTTTGCTGAGGGAGGAAACCCATGATATTTGGGGTAGGAAGGTGGTGGTGGTTGGGGCTGGAGTTGCCATCTGTGATCGCAGGGACAACTTGATATTCGAAAGTAGGAAGAATCTCAAAAACGACGTCACTCAAGTGACTCGTTTAGAAAAAAAGTTTGCATATTGCAACCCTTGTCTTGTGTTTAGTGGTGGCATTAAGTTTGCTTCGAAACTTGCAATTGAAGCTACAGCTTTTCAGAGCACCTCCTCTGCAGGAACTTGCAAAGCCATGAGTGTGAAGGAGACTTGTTTGATTTGCTTCGAAGACACTCCTATTGCTCGAATGTTTTCAATTGGTACTTGCCATCACAAATATTGCTTGGCTTGTATGAAACATCATGTGGAAGTAAATTTGCAAAGCGGGATCGTGGCACAATGCCCTCATAAAGACTGTAAGTGTGAAGTGAATATTATAACCTGTAAAAAATTATTGTCACCTGAACTTGCTGACATTATGATCGAACGAATCAAGGAGTCTTCTATTCCTGTCACGGAGAAAGTTTACTGCGCATTTCCAATGTGTTCTGCCTTGATGTCCAAAAAGGAGGTCTTGGAACATACCAAGACTTCTTTTGTTAGCGAGGGAGGCAGGAAGTGCATGAAATGCCAGCGTTATTTTTGTGTCAATTGCAAGGTTCCTTGGCACTGTGATATGAGCTGCTATGATTACCAAAGATCAGAAACCAATTCCCTCGCAGAAGAGCAATTGCTAAAATCGCTTGCAATCAAGAAACTATGGCGGCAGTGTTCCAAGTGCAAACATATGGTTGAACTTGATAGTGGTTGCTACCACATCACTTGCAGATGTGGACATCAGTTTTGCTATACTTGCGGAGCTGAATGGAAGAACAAGAGAGCAACATGTTCCTGCCCACTCTGGGATGAGCATCACATTATACGGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

353

Amino Acids

40.02

Weight (kDa)

8.76

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	566
AatII	GACGTC	1 cut(s)	240
Acc16I	TGCGCA	1 cut(s)	661
AciI	CCGC	4 cut(s)	85, 513, 892, 984
AclWI	GGATC	1 cut(s)	524
AcoI	YGGCCR	1 cut(s)	1052
AcsI	RAATTY	1 cut(s)	502
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	2 cut(s)	69, 1030
AflIII	ACRYGT	1 cut(s)	1013
AgsI	TTSAA	3 cut(s)	335, 444, 923
AleI	CACNNNNGTG	1 cut(s)	245
AluBI	AGCT	4 cut(s)	338, 344, 810, 989
AluI	AGCT	4 cut(s)	338, 344, 810, 989
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	1 cut(s)	524
AoxI	GGCC	2 cut(s)	71, 1052
ApeKI	GCWGC	1 cut(s)	810
ApoI	RAATTY	1 cut(s)	502
ArsI	GACNNNNNNTTYG	6 cut(s)	222, 254, 684, 716, 954, 986
Asp700I	GAANNNNTTC	1 cut(s)	439
AspLEI	GCGC	1 cut(s)	662
AsuHPI	GGTGA	2 cut(s)	71, 579
AsuII	TTCGAA	3 cut(s)	210, 320, 414
BbsI	GAAGAC	2 cut(s)	423, 621
Bbv12I	GWGCWC	1 cut(s)	356
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	797
BccI	CCATC	3 cut(s)	71, 188, 465
BcoDI	GTCTC	1 cut(s)	389
BfmI	CTRYAG	2 cut(s)	339, 363
BisI	GCNGC	2 cut(s)	811, 893
BlsI	GCNGC	2 cut(s)	812, 894
BmiI	GGNNCC	1 cut(s)	789
BmsI	GCATC	1 cut(s)	1048
BpiI	GAAGAC	2 cut(s)	423, 621
BpmI	CTGGAG	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	119
Bpu14I	TTCGAA	3 cut(s)	210, 320, 414
BpuEI	CTTGAG	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	1038
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	791
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 1030
Bse8I	GATNNNNATC	1 cut(s)	1038
BseDI	CCNNGG	1 cut(s)	791
BseGI	GGATG	1 cut(s)	1039
BseJI	GATNNNNATC	1 cut(s)	1038
BseLI	CCNNNNNNNGG	2 cut(s)	69, 1030
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	797
BshFI	GGCC	2 cut(s)	73, 1054
BsiHKAI	GWGCWC	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	69, 1030
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	73, 1054
Bsp119I	TTCGAA	3 cut(s)	210, 320, 414
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	4 cut(s)	187, 516, 609, 827
BspACI	CCGC	4 cut(s)	85, 513, 892, 984
BspANI	GGCC	2 cut(s)	73, 1054
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	789
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	1 cut(s)	524
BspQI	GCTCTTC	1 cut(s)	846
BspT104I	TTCGAA	3 cut(s)	210, 320, 414
BssECI	CCNNGG	1 cut(s)	791
BssMI	GATC	4 cut(s)	187, 516, 609, 827
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	791
Bst4CI	ACNGT	2 cut(s)	545, 800
Bst6I	CTCTTC	1 cut(s)	846
BstACI	GRCGYC	1 cut(s)	237
BstAPI	GCANNNNNTGC	2 cut(s)	747, 756
BstBI	TTCGAA	3 cut(s)	210, 320, 414
BstC8I	GCNNGC	2 cut(s)	761, 873
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	1039
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	4 cut(s)	190, 519, 612, 830
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	4 cut(s)	187, 516, 609, 827
BstMWI	GCNNNNNNNGC	7 cut(s)	176, 335, 738, 747, 756, 868, 981
BstNSI	RCATGY	1 cut(s)	1017
BstSFI	CTRYAG	2 cut(s)	339, 363
BstV1I	GCAGC	1 cut(s)	797
BstV2I	GAAGAC	2 cut(s)	423, 621
BsuRI	GGCC	2 cut(s)	73, 1054
BtsCI	GGATG	1 cut(s)	1039
BtsI	GCAGTG	1 cut(s)	902
BtsIMutI	CAGTG	2 cut(s)	796, 902
Cac8I	GCNNGC	2 cut(s)	761, 873
CfoI	GCGC	1 cut(s)	662
Csp6I	GTAC	1 cut(s)	450
CspCI	CAANNNNNGTGG	2 cut(s)	932, 967
CviAII	CATG	5 cut(s)	134, 382, 491, 751, 1014
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	4 cut(s)	189, 518, 611, 829
DpnII	GATC	4 cut(s)	187, 516, 609, 827
EaeI	YGGCCR	1 cut(s)	1052
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	791
Eco147I	AGGCCT	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	791
ErhI	CCWWGG	1 cut(s)	791
FaeI	CATG	5 cut(s)	137, 385, 494, 754, 1017
FalI	AAGNNNNNCTT	2 cut(s)	686, 718
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	5 cut(s)	133, 381, 490, 750, 1013
FauI	CCCGC	1 cut(s)	506
FauNDI	CATATG	1 cut(s)	915
Fnu4HI	GCNGC	2 cut(s)	811, 893
FokI	GGATG	1 cut(s)	1046
Fsp4HI	GCNGC	2 cut(s)	811, 893
FspI	TGCGCA	1 cut(s)	661
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	2 cut(s)	811, 893
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	73, 1054
HhaI	GCGC	1 cut(s)	662
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	5 cut(s)	137, 385, 494, 754, 1017
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HinfI	GANTC	4 cut(s)	223, 250, 618, 626
HphI	GGTGA	2 cut(s)	71, 579
Hpy166II	GTNNAC	2 cut(s)	655, 962
Hpy188I	TCNGA	2 cut(s)	351, 832
Hpy188III	TCNNGA	2 cut(s)	67, 880
Hpy8I	GTNNAC	2 cut(s)	655, 962
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	98, 145, 385
HpyCH4III	ACNGT	2 cut(s)	545, 800
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	7 cut(s)	176, 335, 738, 747, 756, 868, 981
HpyF3I	CTNAG	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	137, 385, 494, 754, 1017
HspAI	GCGC	1 cut(s)	660
Kzo9I	GATC	4 cut(s)	187, 516, 609, 827
LguI	GCTCTTC	1 cut(s)	846
LmnI	GCTCC	1 cut(s)	986
Lsp1109I	GCAGC	1 cut(s)	797
LweI	GCATC	1 cut(s)	1048
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	5 cut(s)	77, 238, 247, 585, 640
MalI	GATC	4 cut(s)	189, 518, 611, 829
MboI	GATC	4 cut(s)	187, 516, 609, 827
MboII	GAAGA	5 cut(s)	232, 428, 621, 863, 1009
MfeI	CAATTG	4 cut(s)	330, 444, 778, 857
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	7 cut(s)	330, 444, 502, 578, 778, 838, 857
MlyI	GAGTC	2 cut(s)	244, 635
MroXI	GAANNNNTTC	1 cut(s)	439
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	2 cut(s)	245, 386
MunI	CAATTG	4 cut(s)	330, 444, 778, 857
MwoI	GCNNNNNNNGC	7 cut(s)	176, 335, 738, 747, 756, 868, 981
NdeI	CATATG	1 cut(s)	915
NdeII	GATC	4 cut(s)	187, 516, 609, 827
NlaIII	CATG	5 cut(s)	137, 385, 494, 754, 1017
NlaIV	GGNNCC	1 cut(s)	789
NmuCI	GTSAC	5 cut(s)	77, 238, 247, 585, 640
NsbI	TGCGCA	1 cut(s)	661
NspI	RCATGY	1 cut(s)	1017
NspV	TTCGAA	3 cut(s)	210, 320, 414
OliI	CACNNNNGTG	1 cut(s)	245
PceI	AGGCCT	1 cut(s)	73
PciI	ACATGT	1 cut(s)	1013
PciSI	GCTCTTC	1 cut(s)	846
PdmI	GAANNNNTTC	1 cut(s)	439
PfeI	GAWTC	2 cut(s)	223, 618
PkrI	GCNGC	2 cut(s)	812, 894
PleI	GAGTC	2 cut(s)	244, 634
PpsI	GAGTC	2 cut(s)	244, 634
PscI	ACATGT	1 cut(s)	1013
PsiI	TTATAA	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	789
PstI	CTGCAG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	2 cut(s)	245, 386
SapI	GCTCTTC	1 cut(s)	846
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	811, 893
Sau3AI	GATC	4 cut(s)	187, 516, 609, 827
SchI	GAGTC	2 cut(s)	244, 635
SduI	GDGCHC	1 cut(s)	356
SfaNI	GCATC	1 cut(s)	1048
SfcI	CTRYAG	2 cut(s)	339, 363
SfuI	TTCGAA	3 cut(s)	210, 320, 414
SmiMI	CAYNNNNRTG	2 cut(s)	245, 386
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	7 cut(s)	330, 444, 502, 578, 778, 838, 857
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	4 cut(s)	85, 513, 892, 984
SspI	AATATT	2 cut(s)	467, 562
StuI	AGGCCT	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	2 cut(s)	545, 800
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	6 cut(s)	66, 210, 320, 414, 433, 612
TasI	AATT	7 cut(s)	330, 444, 502, 578, 778, 838, 857
TauI	GCSGC	1 cut(s)	895
TfiI	GAWTC	2 cut(s)	223, 618
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	2 cut(s)	803, 902
TseFI	GTSAC	5 cut(s)	77, 238, 247, 585, 640
TseI	GCWGC	1 cut(s)	810
Tsp45I	GTSAC	5 cut(s)	77, 238, 247, 585, 640
TspDTI	ATGAA	3 cut(s)	80, 497, 767
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	2 cut(s)	803, 902
XapI	RAATTY	1 cut(s)	502
XceI	RCATGY	1 cut(s)	1017
XmnI	GAANNNNTTC	1 cut(s)	439
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.