Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 473 - 723 | 1.8e-23 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1079, 1992 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 130 |
| AccB1I | GGYRCC | 1 cut(s) | 1930 |
| AccBSI | CCGCTC | 1 cut(s) | 2268 |
| AccII | CGCG | 1 cut(s) | 1870 |
| AciI | CCGC | 3 cut(s) | 1870, 2268, 2466 |
| AclWI | GGATC | 1 cut(s) | 1736 |
| AcsI | RAATTY | 3 cut(s) | 44, 620, 635 |
| AcuI | CTGAAG | 2 cut(s) | 837, 972 |
| AcyI | GRCGYC | 1 cut(s) | 1824 |
| AdeI | CACNNNGTG | 1 cut(s) | 2428 |
| AfaI | GTAC | 8 cut(s) | 550, 864, 1372, 1536, 1757, 2094, 2565, 2579 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 501, 1243, 1805, 1816, 1882, 2591 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 175 |
| AhlI | ACTAGT | 1 cut(s) | 2530 |
| AjiI | CACGTC | 2 cut(s) | 318, 1312 |
| AjnI | CCWGG | 2 cut(s) | 1249, 1875 |
| Alw21I | GWGCWC | 3 cut(s) | 573, 1343, 2289 |
| Alw26I | GTCTC | 5 cut(s) | 352, 466, 535, 804, 2521 |
| AlwI | GGATC | 1 cut(s) | 1736 |
| AoxI | GGCC | 4 cut(s) | 1253, 1427, 1650, 1807 |
| ApeKI | GCWGC | 4 cut(s) | 871, 1015, 1069, 2047 |
| ApoI | RAATTY | 3 cut(s) | 44, 620, 635 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 398, 430 |
| AseI | ATTAAT | 1 cut(s) | 1547 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1212, 2492 |
| AspLEI | GCGC | 1 cut(s) | 1856 |
| AspS9I | GGNCC | 3 cut(s) | 422, 1253, 1807 |
| AsuC2I | CCSGG | 2 cut(s) | 518, 1539 |
| AvaII | GGWCC | 1 cut(s) | 422 |
| AxyI | CCTNAGG | 2 cut(s) | 1811, 2454 |
| BaeGI | GKGCMC | 2 cut(s) | 1222, 1933 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1362, 1395 |
| BanI | GGYRCC | 1 cut(s) | 1930 |
| BanII | GRGCYC | 1 cut(s) | 1343 |
| BauI | CACGAG | 1 cut(s) | 890 |
| BbsI | GAAGAC | 2 cut(s) | 89, 2616 |
| Bbv12I | GWGCWC | 3 cut(s) | 573, 1343, 2289 |
| BbvI | GCAGC | 4 cut(s) | 883, 1002, 1081, 2059 |
| BccI | CCATC | 8 cut(s) | 329, 987, 1246, 1253, 1496, 1835, 2241, 2371 |
| BciT130I | CCWGG | 2 cut(s) | 1251, 1877 |
| BclI | TGATCA | 1 cut(s) | 2398 |
| BcnI | CCSGG | 2 cut(s) | 518, 1539 |
| BcoDI | GTCTC | 5 cut(s) | 352, 466, 535, 804, 2521 |
| BcuI | ACTAGT | 1 cut(s) | 2530 |
| BisI | GCNGC | 5 cut(s) | 872, 1016, 1070, 1871, 2048 |
| BlpI | GCTNAGC | 2 cut(s) | 1887, 2514 |
| BlsI | GCNGC | 5 cut(s) | 873, 1017, 1071, 1872, 2049 |
| BmcAI | AGTACT | 1 cut(s) | 2579 |
| Bme1390I | CCNGG | 4 cut(s) | 518, 1251, 1539, 1877 |
| Bme18I | GGWCC | 1 cut(s) | 422 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 175 |
| BmgBI | CACGTC | 2 cut(s) | 318, 1312 |
| BmgT120I | GGNCC | 3 cut(s) | 422, 1253, 1807 |
| BmiI | GGNNCC | 7 cut(s) | 424, 1248, 1465, 1808, 1874, 1932, 2272 |
| BmrFI | CCNGG | 4 cut(s) | 518, 1251, 1539, 1877 |
| BmrI | ACTGGG | 1 cut(s) | 2434 |
| BmsI | GCATC | 5 cut(s) | 1426, 1727, 2191, 2355, 2457 |
| BmuI | ACTGGG | 1 cut(s) | 2434 |
| BpiI | GAAGAC | 2 cut(s) | 89, 2616 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 754, 786, 801, 833, 1918, 1950 |
| Bpu10I | CCTNAGC | 2 cut(s) | 644, 2264 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1887, 2514 |
| BpuMI | CCSGG | 2 cut(s) | 518, 1539 |
| BsaAI | YACGTR | 2 cut(s) | 1374, 2634 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2160 |
| BsaHI | GRCGYC | 1 cut(s) | 1824 |
| BsaI | GGTCTC | 2 cut(s) | 535, 804 |
| BsaJI | CCNNGG | 6 cut(s) | 188, 495, 1242, 1250, 1467, 1538 |
| BsaWI | WCCGGW | 1 cut(s) | 2273 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 665, 695, 1814, 1844 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 501, 1243, 1805, 1816, 1882, 2591 |
| Bse118I | RCCGGY | 1 cut(s) | 565 |
| Bse1I | ACTGG | 5 cut(s) | 700, 1271, 1572, 2429, 2514 |
| Bse21I | CCTNAGG | 2 cut(s) | 1811, 2454 |
| Bse3DI | GCAATG | 1 cut(s) | 1585 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2160 |
| BseBI | CCWGG | 2 cut(s) | 1251, 1877 |
| BseDI | CCNNGG | 6 cut(s) | 188, 495, 1242, 1250, 1467, 1538 |
| BseGI | GGATG | 7 cut(s) | 1171, 1238, 1264, 1300, 2206, 2252, 2448 |
| BseJI | GATNNNNATC | 1 cut(s) | 2160 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 501, 1243, 1805, 1816, 1882, 2591 |
| BseMI | GCAATG | 1 cut(s) | 1585 |
| BseNI | ACTGG | 5 cut(s) | 700, 1271, 1572, 2429, 2514 |
| BseRI | GAGGAG | 3 cut(s) | 188, 665, 2423 |
| BseSI | GKGCMC | 2 cut(s) | 1222, 1933 |
| BseXI | GCAGC | 4 cut(s) | 883, 1002, 1081, 2059 |
| BsgI | GTGCAG | 3 cut(s) | 1069, 1715, 2156 |
| Bsh1236I | CGCG | 1 cut(s) | 1870 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1351 |
| BshFI | GGCC | 4 cut(s) | 1255, 1429, 1652, 1809 |
| BshNI | GGYRCC | 1 cut(s) | 1930 |
| BsiEI | CGRYCG | 1 cut(s) | 1351 |
| BsiHKAI | GWGCWC | 3 cut(s) | 573, 1343, 2289 |
| BsiSI | CCGG | 5 cut(s) | 518, 566, 1256, 1538, 2274 |
| BslFI | GGGAC | 2 cut(s) | 408, 1835 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 501, 1243, 1805, 1816, 1882, 2591 |
| BsmAI | GTCTC | 5 cut(s) | 352, 466, 535, 804, 2521 |
| BsmFI | GGGAC | 2 cut(s) | 408, 1835 |
| BsmI | GAATGC | 1 cut(s) | 1673 |
| BsnI | GGCC | 4 cut(s) | 1255, 1429, 1652, 1809 |
| Bso31I | GGTCTC | 2 cut(s) | 535, 804 |
| Bsp1286I | GDGCHC | 5 cut(s) | 573, 1222, 1343, 1933, 2289 |
| Bsp143I | GATC | 6 cut(s) | 478, 556, 929, 1348, 1728, 2398 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1887, 2514 |
| Bsp19I | CCATGG | 1 cut(s) | 188 |
| BspACI | CCGC | 3 cut(s) | 1870, 2268, 2466 |
| BspANI | GGCC | 4 cut(s) | 1255, 1429, 1652, 1809 |
| BspFNI | CGCG | 1 cut(s) | 1870 |
| BspHI | TCATGA | 1 cut(s) | 1731 |
| BspLI | GGNNCC | 7 cut(s) | 424, 1248, 1465, 1808, 1874, 1932, 2272 |
| BspPI | GGATC | 1 cut(s) | 1736 |
| BspT107I | GGYRCC | 1 cut(s) | 1930 |
| BspTNI | GGTCTC | 2 cut(s) | 535, 804 |
| BsrBI | CCGCTC | 1 cut(s) | 2268 |
| BsrDI | GCAATG | 1 cut(s) | 1585 |
| BsrFI | RCCGGY | 1 cut(s) | 565 |
| BsrI | ACTGG | 5 cut(s) | 700, 1271, 1572, 2429, 2514 |
| BssAI | RCCGGY | 1 cut(s) | 565 |
| BssECI | CCNNGG | 6 cut(s) | 188, 495, 1242, 1250, 1467, 1538 |
| BssMI | GATC | 6 cut(s) | 478, 556, 929, 1348, 1728, 2398 |
| BssNI | GRCGYC | 1 cut(s) | 1824 |
| BssSI | CACGAG | 1 cut(s) | 890 |
| BssT1I | CCWWGG | 3 cut(s) | 188, 1242, 1467 |
| Bst2BI | CACGAG | 1 cut(s) | 890 |
| Bst2UI | CCWGG | 2 cut(s) | 1251, 1877 |
| Bst4CI | ACNGT | 3 cut(s) | 65, 391, 1750 |
| Bst6I | CTCTTC | 2 cut(s) | 1050, 1600 |
| BstACI | GRCGYC | 1 cut(s) | 1824 |
| BstBAI | YACGTR | 2 cut(s) | 1374, 2634 |
| BstC8I | GCNNGC | 4 cut(s) | 2105, 2118, 2383, 2604 |
| BstDSI | CCRYGG | 1 cut(s) | 188 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1814, 2589 |
| BstF5I | GGATG | 7 cut(s) | 1171, 1238, 1264, 1300, 2206, 2252, 2448 |
| BstFNI | CGCG | 1 cut(s) | 1870 |
| BstHHI | GCGC | 1 cut(s) | 1856 |
| BstKTI | GATC | 6 cut(s) | 481, 559, 932, 1351, 1731, 2401 |
| BstMAI | GTCTC | 5 cut(s) | 352, 466, 535, 804, 2521 |
| BstMBI | GATC | 6 cut(s) | 478, 556, 929, 1348, 1728, 2398 |
| BstMCI | CGRYCG | 1 cut(s) | 1351 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 497, 2113, 2510 |
| BstNI | CCWGG | 2 cut(s) | 1251, 1877 |
| BstNSI | RCATGY | 2 cut(s) | 1069, 1616 |
| BstSCI | CCNGG | 4 cut(s) | 516, 1249, 1537, 1875 |
| BstSLI | GKGCMC | 2 cut(s) | 1222, 1933 |
| BstUI | CGCG | 1 cut(s) | 1870 |
| BstV1I | GCAGC | 4 cut(s) | 883, 1002, 1081, 2059 |
| BstV2I | GAAGAC | 2 cut(s) | 89, 2616 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1474 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1811, 2454 |
| BsuRI | GGCC | 4 cut(s) | 1255, 1429, 1652, 1809 |
| BtgI | CCRYGG | 1 cut(s) | 188 |
| BtrI | CACGTC | 2 cut(s) | 318, 1312 |
| BtsCI | GGATG | 7 cut(s) | 1171, 1238, 1264, 1300, 2206, 2252, 2448 |
| BtsI | GCAGTG | 1 cut(s) | 1057 |
| BtsIMutI | CAGTG | 3 cut(s) | 1057, 2175, 2422 |
| Cac8I | GCNNGC | 4 cut(s) | 2105, 2118, 2383, 2604 |
| CciI | TCATGA | 1 cut(s) | 1731 |
| CfoI | GCGC | 1 cut(s) | 1856 |
| Cfr10I | RCCGGY | 1 cut(s) | 565 |
| Cfr13I | GGNCC | 3 cut(s) | 422, 1253, 1807 |
| CseI | GACGC | 2 cut(s) | 877, 1832 |
| Csp6I | GTAC | 8 cut(s) | 549, 863, 1371, 1535, 1756, 2093, 2564, 2578 |
| CviQI | GTAC | 8 cut(s) | 549, 863, 1371, 1535, 1756, 2093, 2564, 2578 |
| DpnI | GATC | 6 cut(s) | 480, 558, 931, 1350, 1730, 2400 |
| DpnII | GATC | 6 cut(s) | 478, 556, 929, 1348, 1728, 2398 |
| DraI | TTTAAA | 2 cut(s) | 540, 963 |
| DraIII | CACNNNGTG | 1 cut(s) | 2428 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 130 |
| DriI | GACNNNNNGTC | 1 cut(s) | 175 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 130 |
| Eam1104I | CTCTTC | 2 cut(s) | 1050, 1600 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 175 |
| EarI | CTCTTC | 2 cut(s) | 1050, 1600 |
| EciI | GGCGGA | 1 cut(s) | 2481 |
| Ecl136II | GAGCTC | 1 cut(s) | 1341 |
| Eco130I | CCWWGG | 3 cut(s) | 188, 1242, 1467 |
| Eco147I | AGGCCT | 2 cut(s) | 1429, 1652 |
| Eco24I | GRGCYC | 1 cut(s) | 1343 |
| Eco31I | GGTCTC | 2 cut(s) | 535, 804 |
| Eco47I | GGWCC | 1 cut(s) | 422 |
| Eco53kI | GAGCTC | 1 cut(s) | 1341 |
| Eco57I | CTGAAG | 2 cut(s) | 837, 972 |
| Eco81I | CCTNAGG | 2 cut(s) | 1811, 2454 |
| EcoICRI | GAGCTC | 1 cut(s) | 1341 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1814, 2589 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1807 |
| EcoRII | CCWGG | 2 cut(s) | 1249, 1875 |
| EcoT14I | CCWWGG | 3 cut(s) | 188, 1242, 1467 |
| EcoT22I | ATGCAT | 1 cut(s) | 2370 |
| EcoT38I | GRGCYC | 1 cut(s) | 1343 |
| ErhI | CCWWGG | 3 cut(s) | 188, 1242, 1467 |
| FaqI | GGGAC | 2 cut(s) | 408, 1835 |
| FauNDI | CATATG | 1 cut(s) | 2320 |
| FbaI | TGATCA | 1 cut(s) | 2398 |
| Fnu4HI | GCNGC | 5 cut(s) | 872, 1016, 1070, 1871, 2048 |
| FokI | GGATG | 7 cut(s) | 1178, 1225, 1271, 1307, 2213, 2259, 2435 |
| FriOI | GRGCYC | 1 cut(s) | 1343 |
| Fsp4HI | GCNGC | 5 cut(s) | 872, 1016, 1070, 1871, 2048 |
| GlaI | GCGC | 1 cut(s) | 1855 |
| GluI | GCNGC | 5 cut(s) | 872, 1016, 1070, 1871, 2048 |
| HaeIII | GGCC | 4 cut(s) | 1255, 1429, 1652, 1809 |
| HapII | CCGG | 5 cut(s) | 518, 566, 1256, 1538, 2274 |
| HgaI | GACGC | 2 cut(s) | 877, 1832 |
| HhaI | GCGC | 1 cut(s) | 1856 |
| Hin1I | GRCGYC | 1 cut(s) | 1824 |
| Hin6I | GCGC | 1 cut(s) | 1854 |
| HinP1I | GCGC | 1 cut(s) | 1854 |
| HincII | GTYRAC | 1 cut(s) | 2040 |
| HindII | GTYRAC | 1 cut(s) | 2040 |
| HindIII | AAGCTT | 2 cut(s) | 1097, 2101 |
| HinfI | GANTC | 9 cut(s) | 94, 176, 229, 769, 1058, 1662, 1964, 2302, 2546 |
| HpaII | CCGG | 5 cut(s) | 518, 566, 1256, 1538, 2274 |
| Hpy166II | GTNNAC | 4 cut(s) | 198, 406, 1174, 2040 |
| Hpy188III | TCNNGA | 4 cut(s) | 712, 1732, 2314, 2585 |
| Hpy8I | GTNNAC | 4 cut(s) | 198, 406, 1174, 2040 |
| HpyAV | CCTTC | 7 cut(s) | 861, 947, 1351, 1809, 2188, 2456, 2611 |
| HpyCH4III | ACNGT | 3 cut(s) | 65, 391, 1750 |
| HpyCH4IV | ACGT | 6 cut(s) | 317, 839, 1311, 1373, 1754, 2633 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 497, 2113, 2510 |
| HpySE526I | ACGT | 6 cut(s) | 317, 839, 1311, 1373, 1754, 2633 |
| Hsp92I | GRCGYC | 1 cut(s) | 1824 |
| HspAI | GCGC | 1 cut(s) | 1854 |
| Ksp22I | TGATCA | 1 cut(s) | 2398 |
| Kzo9I | GATC | 6 cut(s) | 478, 556, 929, 1348, 1728, 2398 |
| LmnI | GCTCC | 5 cut(s) | 576, 673, 1252, 1469, 1878 |
| Lsp1109I | GCAGC | 4 cut(s) | 883, 1002, 1081, 2059 |
| LweI | GCATC | 5 cut(s) | 1426, 1727, 2191, 2355, 2457 |
| MaeII | ACGT | 6 cut(s) | 317, 839, 1311, 1373, 1754, 2633 |
| MalI | GATC | 6 cut(s) | 480, 558, 931, 1350, 1730, 2400 |
| MbiI | CCGCTC | 1 cut(s) | 2268 |
| MboI | GATC | 6 cut(s) | 478, 556, 929, 1348, 1728, 2398 |
| MfeI | CAATTG | 1 cut(s) | 1421 |
| MhlI | GDGCHC | 5 cut(s) | 573, 1222, 1343, 1933, 2289 |
| MlyI | GAGTC | 6 cut(s) | 103, 185, 763, 1067, 1671, 1958 |
| MmeI | TCCRAC | 3 cut(s) | 740, 1041, 2504 |
| Mph1103I | ATGCAT | 1 cut(s) | 2370 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1212, 2492 |
| MseI | TTAA | 8 cut(s) | 539, 962, 1398, 1547, 1593, 1743, 2216, 2678 |
| MslI | CAYNNNNRTG | 5 cut(s) | 153, 2245, 2355, 2632, 2713 |
| MspA1I | CMGCKG | 1 cut(s) | 874 |
| MspI | CCGG | 5 cut(s) | 518, 566, 1256, 1538, 2274 |
| MspR9I | CCNGG | 4 cut(s) | 518, 1251, 1539, 1877 |
| MunI | CAATTG | 1 cut(s) | 1421 |
| Mva1269I | GAATGC | 1 cut(s) | 1673 |
| MvaI | CCWGG | 2 cut(s) | 1251, 1877 |
| MvnI | CGCG | 1 cut(s) | 1870 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 497, 2113, 2510 |
| NciI | CCSGG | 2 cut(s) | 518, 1539 |
| NcoI | CCATGG | 1 cut(s) | 188 |
| NdeI | CATATG | 1 cut(s) | 2320 |
| NdeII | GATC | 6 cut(s) | 478, 556, 929, 1348, 1728, 2398 |
| NlaIV | GGNNCC | 7 cut(s) | 424, 1248, 1465, 1808, 1874, 1932, 2272 |
| NmeAIII | GCCGAG | 1 cut(s) | 476 |
| NmuCI | GTSAC | 4 cut(s) | 121, 146, 1307, 1750 |
| NsiI | ATGCAT | 1 cut(s) | 2370 |
| NspI | RCATGY | 2 cut(s) | 1069, 1616 |
| PagI | TCATGA | 1 cut(s) | 1731 |
| PceI | AGGCCT | 2 cut(s) | 1429, 1652 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 69, 1662 |
| PctI | GAATGC | 1 cut(s) | 1673 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1212, 2492 |
| PfeI | GAWTC | 3 cut(s) | 229, 2302, 2546 |
| PflFI | GACNNNGTC | 1 cut(s) | 244 |
| PkrI | GCNGC | 5 cut(s) | 873, 1017, 1071, 1872, 2049 |
| Ple19I | CGATCG | 1 cut(s) | 1351 |
| PleI | GAGTC | 6 cut(s) | 102, 184, 763, 1066, 1670, 1958 |
| PpsI | GAGTC | 6 cut(s) | 102, 184, 763, 1066, 1670, 1958 |
| Ppu21I | YACGTR | 2 cut(s) | 1374, 2634 |
| PshBI | ATTAAT | 1 cut(s) | 1547 |
| PsiI | TTATAA | 2 cut(s) | 1079, 1992 |
| Psp124BI | GAGCTC | 1 cut(s) | 1343 |
| Psp6I | CCWGG | 2 cut(s) | 1249, 1875 |
| PspGI | CCWGG | 2 cut(s) | 1249, 1875 |
| PspN4I | GGNNCC | 7 cut(s) | 424, 1248, 1465, 1808, 1874, 1932, 2272 |
| PspPI | GGNCC | 3 cut(s) | 422, 1253, 1807 |
| PsyI | GACNNNGTC | 1 cut(s) | 244 |
| PvuI | CGATCG | 1 cut(s) | 1351 |
| PvuII | CAGCTG | 1 cut(s) | 874 |
| RsaI | GTAC | 8 cut(s) | 550, 864, 1372, 1536, 1757, 2094, 2565, 2579 |
| RsaNI | GTAC | 8 cut(s) | 549, 863, 1371, 1535, 1756, 2093, 2564, 2578 |
| RseI | CAYNNNNRTG | 5 cut(s) | 153, 2245, 2355, 2632, 2713 |
| SacI | GAGCTC | 1 cut(s) | 1343 |
| SaqAI | TTAA | 8 cut(s) | 539, 962, 1398, 1547, 1593, 1743, 2216, 2678 |
| SatI | GCNGC | 5 cut(s) | 872, 1016, 1070, 1871, 2048 |
| Sau3AI | GATC | 6 cut(s) | 478, 556, 929, 1348, 1728, 2398 |
| Sau96I | GGNCC | 3 cut(s) | 422, 1253, 1807 |
| ScaI | AGTACT | 1 cut(s) | 2579 |
| SchI | GAGTC | 6 cut(s) | 103, 185, 763, 1067, 1671, 1958 |
| ScrFI | CCNGG | 4 cut(s) | 518, 1251, 1539, 1877 |
| SduI | GDGCHC | 5 cut(s) | 573, 1222, 1343, 1933, 2289 |
| SfaNI | GCATC | 5 cut(s) | 1426, 1727, 2191, 2355, 2457 |
| SinI | GGWCC | 1 cut(s) | 422 |
| SmiI | ATTTAAAT | 1 cut(s) | 963 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 153, 2245, 2355, 2632, 2713 |
| SpeI | ACTAGT | 1 cut(s) | 2530 |
| SseBI | AGGCCT | 2 cut(s) | 1429, 1652 |
| SsiI | CCGC | 3 cut(s) | 1870, 2268, 2466 |
| SstI | GAGCTC | 1 cut(s) | 1343 |
| StuI | AGGCCT | 2 cut(s) | 1429, 1652 |
| StyD4I | CCNGG | 4 cut(s) | 516, 1249, 1537, 1875 |
| StyI | CCWWGG | 3 cut(s) | 188, 1242, 1467 |
| SwaI | ATTTAAAT | 1 cut(s) | 963 |
| TaaI | ACNGT | 3 cut(s) | 65, 391, 1750 |
| TaiI | ACGT | 6 cut(s) | 320, 842, 1314, 1376, 1757, 2636 |
| TaqI | TCGA | 4 cut(s) | 713, 1665, 2192, 2315 |
| TaqII | GACCGA | 1 cut(s) | 69 |
| TatI | WGTACW | 2 cut(s) | 548, 2577 |
| TauI | GCSGC | 1 cut(s) | 1873 |
| TfiI | GAWTC | 3 cut(s) | 229, 2302, 2546 |
| Tru1I | TTAA | 8 cut(s) | 539, 962, 1398, 1547, 1593, 1743, 2216, 2678 |
| Tru9I | TTAA | 8 cut(s) | 539, 962, 1398, 1547, 1593, 1743, 2216, 2678 |
| TscAI | CASTG | 3 cut(s) | 1057, 2182, 2429 |
| TseFI | GTSAC | 4 cut(s) | 121, 146, 1307, 1750 |
| TseI | GCWGC | 4 cut(s) | 871, 1015, 1069, 2047 |
| Tsp45I | GTSAC | 4 cut(s) | 121, 146, 1307, 1750 |
| TspDTI | ATGAA | 8 cut(s) | 17, 1370, 1753, 1960, 2046, 2501, 2587, 2616 |
| TspGWI | ACGGA | 2 cut(s) | 880, 1178 |
| TspRI | CASTG | 3 cut(s) | 1057, 2182, 2429 |
| Tth111I | GACNNNGTC | 1 cut(s) | 244 |
| VpaK11BI | GGWCC | 1 cut(s) | 422 |
| VspI | ATTAAT | 1 cut(s) | 1547 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1814, 2589 |
| XapI | RAATTY | 3 cut(s) | 44, 620, 635 |
| XceI | RCATGY | 2 cut(s) | 1069, 1616 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1212, 2492 |
| ZrmI | AGTACT | 1 cut(s) | 2579 |
| Zsp2I | ATGCAT | 1 cut(s) | 2370 |