Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

24261826 .. 24264757

Gene Structure 2932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGCCGACTCTCTCGCTCTCCAACCACCATCCACTTCTCAACTCAATCTCCACCCTCGGATTCACGACCACAATTTCGTAATCGACCTCACCGACTCGGCGGAGGCCTACTGCACGAACGACGCGTCGTCGTCCTGGTCGAAGGCGGCGGAGGAGGAGAGCGAGTGTTTTAGACTGTATTTCAAGGGGCTTGTGAGCGAGGAGAGGGTCAAGGACATGGATGTCATTGTGGCCGGGGTTGGGGTTGCCATTTGTGACGCTAGAGATAATCTGATTTTGGAGGCCAAGAAGAATCTGGAGGCGTTTGGTGGTGGTGAGGTTCTGAGCAATGAGGCTGCTGAGCTTGAGGCTCTTATTGAAGGGCTCAGTACAGCTCTCACTCTGGACTTGAGGAATGTTACATTTTACTGTGATAACAGCAAGCTTTACCAATATGTCACATGCACAGTGCGTCCTGAAAACTTCAAGATTGCGACATTAGTCACTCAAGTTGCTCTTCTACAAAGAAAATTTGAACATTGCACCCCTTCTCTTGTGGAACCTAGGGACATTGAGTTTGCATTTCAATTTGCAAGAGAGGCTATAGTTTCTCAGATCAACTGGCCAGCTAGCAATGGCAAGAGATTGGATGAGACTTGTGTAATTTGTTTTGAAGAAACAGATGTTGCTAGAATGTTTTCAATTGACGGCTGTCTGCACAGGTATTGCAATTCTTGTATGAAACAGCATGTTGAAGCAAAGTTGGTTAATGGGAGCGTGGTGCAGTGTCCTCATGAAGGCTGTGAGTCTGAAGTGAGTATTGATAGCTGTGAAACATTCTTGGAGCCTAAACTTGTTCAAGTTATGCGCCAACAAATCAAGGAATCTTCTATTCCTGTTACGGAGAAGGTTTACTGTCCAAATCCCAAGTGTTCTGCGTTAATGTCAAAAAAAGATGTCTTGGAATATACTAGGACTTATTATGGTTTTGCTGAACAATCTGGAGTCAGGAAATGCATGGAATGTCATTGCTGTTTTTGTATCAATTGCAAAGTTCCATTCGACAATCATACCTGCTATGACTACAAAAAATCAAATCCTTGTGCAGAAGAGCAATTGGTGAAGTCACTGGCTGAAAAGAAACACTGGCGCCAGTGTGTGAACTGCAGCCATATGGTTGAACTTGCAGAAGGCTGTTACCACATAACTTGCAGATGTGGATATGAGTTTTGCTATACGTGTGGAGCTGAATGGAAGGACAAGACACCAACTTGTTCCTGCCCAATCTGGGATGAGCGCAACATTATACGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

431

Amino Acids

48.81

Weight (kDa)

5.21

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	78 - 194	4.9e-18	Reverse transcriptase-like
IBR	PF01485	367 - 418	4.5e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	1061
AccB1I	GGYRCC	1 cut(s)	1128
AccII	CGCG	1 cut(s)	125
AciI	CCGC	3 cut(s)	101, 146, 149
AcoI	YGGCCR	3 cut(s)	3, 231, 602
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	810
AcyI	GRCGYC	1 cut(s)	1129
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	3 cut(s)	240, 776, 1267
AflIII	ACRYGT	2 cut(s)	123, 1217
AhdI	GACNNNNNGTC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	6 cut(s)	343, 374, 424, 608, 807, 1226
AluI	AGCT	6 cut(s)	343, 374, 424, 608, 807, 1226
Alw26I	GTCTC	1 cut(s)	626
AoxI	GGCC	5 cut(s)	3, 105, 231, 282, 602
ApeKI	GCWGC	2 cut(s)	335, 1146
ApoI	RAATTY	1 cut(s)	509
ArsI	GACNNNNNNTTYG	6 cut(s)	59, 91, 110, 142, 539, 571
Asp700I	GAANNNNTTC	1 cut(s)	676
AspA2I	CCTAGG	1 cut(s)	542
AspLEI	GCGC	3 cut(s)	849, 1131, 1278
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	3 cut(s)	82, 326, 1111
AsuNHI	GCTAGC	1 cut(s)	608
AvrII	CCTAGG	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	604
BanI	GGYRCC	1 cut(s)	1128
BanII	GRGCYC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	322, 1158
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	5 cut(s)	261, 543, 609, 669, 951
BfmI	CTRYAG	2 cut(s)	582, 1144
BfoI	RGCGCY	1 cut(s)	1132
BfuAI	ACCTGC	1 cut(s)	1061
BisI	GCNGC	3 cut(s)	147, 336, 1147
BlnI	CCTAGG	1 cut(s)	542
BlpI	GCTNAGC	1 cut(s)	339
BlsI	GCNGC	3 cut(s)	148, 337, 1148
Bme1390I	CCNGG	2 cut(s)	136, 235
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmiI	GGNNCC	3 cut(s)	540, 825, 1130
BmrFI	CCNGG	2 cut(s)	136, 235
BmtI	GCTAGC	1 cut(s)	612
BoxI	GACNNNNGTC	2 cut(s)	479, 690
BpmI	CTGGAG	2 cut(s)	317, 1002
Bpu1102I	GCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	3 cut(s)	365, 409, 471
BpuMI	CCSGG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	1218
BsaHI	GRCGYC	1 cut(s)	1129
BsaJI	CCNNGG	3 cut(s)	56, 234, 542
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 149, 179
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 776, 1267
Bse1I	ACTGG	4 cut(s)	605, 1113, 1130, 1132
Bse3DI	GCAATG	4 cut(s)	334, 517, 619, 1006
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	3 cut(s)	56, 234, 542
BseGI	GGATG	4 cut(s)	29, 226, 634, 1276
BseLI	CCNNNNNNNGG	3 cut(s)	240, 776, 1267
BseMI	GCAATG	4 cut(s)	334, 517, 619, 1006
BseMII	CTCAG	4 cut(s)	314, 330, 379, 605
BseNI	ACTGG	4 cut(s)	605, 1113, 1130, 1132
BseRI	GAGGAG	3 cut(s)	167, 170, 215
BseXI	GCAGC	2 cut(s)	322, 1158
BsgI	GTGCAG	4 cut(s)	97, 680, 782, 1104
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	5 cut(s)	5, 107, 233, 284, 604
BshNI	GGYRCC	1 cut(s)	1128
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	3 cut(s)	240, 776, 1267
BsmAI	GTCTC	1 cut(s)	626
BsmFI	GGGAC	1 cut(s)	560
BsnI	GGCC	5 cut(s)	5, 107, 233, 284, 604
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	1 cut(s)	594
Bsp1720I	GCTNAGC	1 cut(s)	339
BspACI	CCGC	3 cut(s)	101, 146, 149
BspANI	GGCC	5 cut(s)	5, 107, 233, 284, 604
BspCNI	CTCAG	4 cut(s)	315, 331, 378, 604
BspFNI	CGCG	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	3 cut(s)	540, 825, 1130
BspMAI	CTGCAG	1 cut(s)	1148
BspMI	ACCTGC	1 cut(s)	1061
BspOI	GCTAGC	1 cut(s)	612
BspQI	GCTCTTC	2 cut(s)	501, 1083
BspT107I	GGYRCC	1 cut(s)	1128
BsrDI	GCAATG	4 cut(s)	334, 517, 619, 1006
BsrI	ACTGG	4 cut(s)	605, 1113, 1130, 1132
BssECI	CCNNGG	3 cut(s)	56, 234, 542
BssMI	GATC	1 cut(s)	594
BssNI	GRCGYC	1 cut(s)	1129
BssT1I	CCWWGG	1 cut(s)	542
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	4 cut(s)	177, 410, 448, 896
Bst6I	CTCTTC	2 cut(s)	501, 1083
BstACI	GRCGYC	1 cut(s)	1129
BstBAI	YACGTR	1 cut(s)	1218
BstC8I	GCNNGC	3 cut(s)	422, 606, 610
BstDEI	CTNAG	4 cut(s)	323, 339, 365, 591
BstENI	CCTNNNNNAGG	1 cut(s)	774
BstF5I	GGATG	4 cut(s)	29, 226, 634, 1276
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	1132
BstHHI	GCGC	3 cut(s)	849, 1131, 1278
BstKTI	GATC	1 cut(s)	597
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	1 cut(s)	594
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	2 cut(s)	444, 731
BstPAI	GACNNNNGTC	2 cut(s)	479, 690
BstSCI	CCNGG	2 cut(s)	134, 233
BstSFI	CTRYAG	2 cut(s)	582, 1144
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	322, 1158
BsuRI	GGCC	5 cut(s)	5, 107, 233, 284, 604
BtsCI	GGATG	4 cut(s)	29, 226, 634, 1276
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	5 cut(s)	453, 770, 1106, 1123, 1139
BveI	ACCTGC	1 cut(s)	1061
Cac8I	GCNNGC	3 cut(s)	422, 606, 610
CciI	TCATGA	1 cut(s)	772
CfoI	GCGC	3 cut(s)	849, 1131, 1278
CseI	GACGC	4 cut(s)	114, 131, 266, 440
Csp6I	GTAC	1 cut(s)	369
CspCI	CAANNNNNGTGG	2 cut(s)	1169, 1204
CviAII	CATG	5 cut(s)	217, 441, 728, 773, 997
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	4 cut(s)	323, 339, 365, 591
DinI	GGCGCC	1 cut(s)	1130
DpnI	GATC	1 cut(s)	596
DpnII	GATC	1 cut(s)	594
DrdI	GACNNNNNNGTC	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	3 cut(s)	3, 231, 602
Eam1104I	CTCTTC	2 cut(s)	501, 1083
Eam1105I	GACNNNNNGTC	1 cut(s)	127
EarI	CTCTTC	2 cut(s)	501, 1083
EciI	GGCGGA	2 cut(s)	116, 164
Eco130I	CCWWGG	1 cut(s)	542
Eco147I	AGGCCT	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	810
EcoNI	CCTNNNNNAGG	1 cut(s)	774
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	542
EcoT22I	ATGCAT	1 cut(s)	998
EcoT38I	GRGCYC	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	1130
EheI	GGCGCC	1 cut(s)	1130
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	5 cut(s)	220, 444, 731, 776, 1000
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	5 cut(s)	216, 440, 727, 772, 996
FauNDI	CATATG	1 cut(s)	1152
Fnu4HI	GCNGC	3 cut(s)	147, 336, 1147
FokI	GGATG	4 cut(s)	16, 233, 641, 1283
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	147, 336, 1147
FspBI	CTAG	5 cut(s)	261, 543, 609, 669, 951
GlaI	GCGC	3 cut(s)	848, 1130, 1277
GluI	GCNGC	3 cut(s)	147, 336, 1147
GsuI	CTGGAG	2 cut(s)	317, 1002
HaeII	RGCGCY	1 cut(s)	1132
HaeIII	GGCC	5 cut(s)	5, 107, 233, 284, 604
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	4 cut(s)	114, 131, 266, 440
HhaI	GCGC	3 cut(s)	849, 1131, 1278
Hin1I	GRCGYC	1 cut(s)	1129
Hin1II	CATG	5 cut(s)	220, 444, 731, 776, 1000
Hin6I	GCGC	3 cut(s)	847, 1129, 1276
HinP1I	GCGC	3 cut(s)	847, 1129, 1276
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	7 cut(s)	8, 61, 95, 292, 785, 863, 984
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	3 cut(s)	82, 326, 1111
Hpy166II	GTNNAC	2 cut(s)	892, 1141
Hpy188I	TCNGA	5 cut(s)	60, 273, 324, 594, 790
Hpy188III	TCNNGA	8 cut(s)	65, 296, 383, 455, 466, 773, 981, 988
Hpy8I	GTNNAC	2 cut(s)	892, 1141
Hpy99I	CGWCG	3 cut(s)	125, 130, 133
HpyAV	CCTTC	7 cut(s)	136, 353, 537, 770, 880, 1163, 1228
HpyCH4III	ACNGT	4 cut(s)	177, 410, 448, 896
HpyCH4IV	ACGT	1 cut(s)	1217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	4 cut(s)	323, 339, 365, 591
HpySE526I	ACGT	1 cut(s)	1217
Hsp92I	GRCGYC	1 cut(s)	1129
Hsp92II	CATG	5 cut(s)	220, 444, 731, 776, 1000
HspAI	GCGC	3 cut(s)	847, 1129, 1276
KasI	GGCGCC	1 cut(s)	1128
Kzo9I	GATC	1 cut(s)	594
LguI	GCTCTTC	2 cut(s)	501, 1083
LmnI	GCTCC	3 cut(s)	753, 823, 1223
Lsp1109I	GCAGC	2 cut(s)	322, 1158
MaeI	CTAG	5 cut(s)	261, 543, 609, 669, 951
MaeII	ACGT	1 cut(s)	1217
MaeIII	GTNAC	7 cut(s)	254, 397, 436, 481, 877, 1104, 1175
MalI	GATC	1 cut(s)	596
MboI	GATC	1 cut(s)	594
MboII	GAAGA	5 cut(s)	301, 488, 665, 858, 1100
MfeI	CAATTG	3 cut(s)	681, 1024, 1094
MhlI	GDGCHC	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	604
MluCI	AATT	8 cut(s)	73, 509, 566, 642, 681, 709, 1024, 1094
MluI	ACGCGT	1 cut(s)	123
MluNI	TGGCCA	1 cut(s)	604
Mly113I	GGCGCC	1 cut(s)	1129
MlyI	GAGTC	4 cut(s)	2, 89, 794, 993
MmeI	TCCRAC	1 cut(s)	46
Mox20I	TGGCCA	1 cut(s)	604
Mph1103I	ATGCAT	1 cut(s)	998
MroXI	GAANNNNTTC	1 cut(s)	676
MscI	TGGCCA	1 cut(s)	604
MseI	TTAA	2 cut(s)	747, 920
Msp20I	TGGCCA	1 cut(s)	604
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	2 cut(s)	136, 235
MunI	CAATTG	3 cut(s)	681, 1024, 1094
MvaI	CCWGG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	578
NarI	GGCGCC	1 cut(s)	1129
NciI	CCSGG	1 cut(s)	235
NdeI	CATATG	1 cut(s)	1152
NdeII	GATC	1 cut(s)	594
NheI	GCTAGC	1 cut(s)	608
NlaIII	CATG	5 cut(s)	220, 444, 731, 776, 1000
NlaIV	GGNNCC	3 cut(s)	540, 825, 1130
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	4 cut(s)	254, 436, 481, 1104
NsiI	ATGCAT	1 cut(s)	998
NspI	RCATGY	2 cut(s)	444, 731
PagI	TCATGA	1 cut(s)	772
PceI	AGGCCT	1 cut(s)	107
PciSI	GCTCTTC	2 cut(s)	501, 1083
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 122, 137
PdmI	GAANNNNTTC	1 cut(s)	676
PfeI	GAWTC	3 cut(s)	61, 292, 863
PkrI	GCNGC	3 cut(s)	148, 337, 1148
PleI	GAGTC	4 cut(s)	2, 89, 793, 992
PluTI	GGCGCC	1 cut(s)	1132
PpsI	GAGTC	4 cut(s)	2, 89, 793, 992
Ppu21I	YACGTR	1 cut(s)	1218
PshAI	GACNNNNGTC	2 cut(s)	479, 690
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	3 cut(s)	540, 825, 1130
PstI	CTGCAG	1 cut(s)	1148
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SapI	GCTCTTC	2 cut(s)	501, 1083
SaqAI	TTAA	2 cut(s)	747, 920
SatI	GCNGC	3 cut(s)	147, 336, 1147
Sau3AI	GATC	1 cut(s)	594
SchI	GAGTC	4 cut(s)	2, 89, 794, 993
ScrFI	CCNGG	2 cut(s)	136, 235
SduI	GDGCHC	1 cut(s)	366
SfcI	CTRYAG	2 cut(s)	582, 1144
SfoI	GGCGCC	1 cut(s)	1130
SmlI	CTYRAG	3 cut(s)	344, 388, 486
SmoI	CTYRAG	3 cut(s)	344, 388, 486
Sse9I	AATT	8 cut(s)	73, 509, 566, 642, 681, 709, 1024, 1094
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	3 cut(s)	101, 146, 149
SspDI	GGCGCC	1 cut(s)	1128
SspMI	CTAG	5 cut(s)	261, 543, 609, 669, 951
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	134, 233
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	4 cut(s)	177, 410, 448, 896
TaiI	ACGT	1 cut(s)	1220
TaqI	TCGA	3 cut(s)	84, 140, 1041
TasI	AATT	8 cut(s)	73, 509, 566, 642, 681, 709, 1024, 1094
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	3 cut(s)	61, 292, 863
Tru1I	TTAA	2 cut(s)	747, 920
Tru9I	TTAA	2 cut(s)	747, 920
TscAI	CASTG	5 cut(s)	453, 770, 1113, 1130, 1139
TseFI	GTSAC	4 cut(s)	254, 436, 481, 1104
TseI	GCWGC	2 cut(s)	335, 1146
Tsp45I	GTSAC	4 cut(s)	254, 436, 481, 1104
TspDTI	ATGAA	2 cut(s)	734, 789
TspGWI	ACGGA	1 cut(s)	896
TspRI	CASTG	5 cut(s)	453, 770, 1113, 1130, 1139
XagI	CCTNNNNNAGG	1 cut(s)	774
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	2 cut(s)	444, 731
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmaJI	CCTAGG	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	676
XspI	CTAG	5 cut(s)	261, 543, 609, 669, 951
Zsp2I	ATGCAT	1 cut(s)	998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.