Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

12900856 .. 12902876

Gene Structure 2021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1130800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGTGTGAAGGAAACTTGTTTGATTTGTTTTGAAGACAATGATGTTGCTCGAATGCTTTCGATCGGTACTTGTCAACACAAATATTGCTTGCCTTGCTTGAAACATCACGTCGAAATAAATTTGCAAAACGGGATCGTGGCACAATGCCCTCATAAAGACTGTAAGTGTGAGGTGAATGTCGATAGTTGTAAGACATTCTTGTCGTCTGAACTTGCCAATGTTTTGATCGAACGAATCAAGGAGTCTTCAATTCCTGTTACGGAGAAAGTTTACTGCCCATTTCCGAGGTGTTCTGCACTAATGTCGAAACAGGAGGTCTTGGAAAATACCAAGACTTCTTTTGTTAGTGAGGGAGGCAGGAAGTGCGTGAAATGTAAACACTATTTCTGTATCAACTGCAAGGTTCCTTGGCACTATGATATGAGCTGCTACGATTTCCAGAGATCAGAAATGTATTCCTGCGTGGAAGACCAATTGTTGAAATCATTTGCGTCGAAGAAACTTTGGCGCCAGTGTTCAAAGTGCAATCATATGGTTGAACTTGAGAGTGGTTGCTACCACATCACTTGCAGATGCGGACATCAGTTTTGCTATACTTGTGGAGCCGAATGGAAGAACAAGCATGCAACCTGTTCCTGCCCTATCTGGGACGAGCATTTTATTATCAGGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

226

Amino Acids

26.02

Weight (kDa)

7.92

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	89 - 144	8e-12	IBR domain, a half RING-finger domain
IBR	PF01485	158 - 214	3.1e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	172 - 208	5.5e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	510
AciI	CCGC	1 cut(s)	579
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	511
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	649
AgsI	TTSAA	6 cut(s)	35, 103, 252, 484, 522, 542
AjiI	CACGTC	1 cut(s)	112
AluBI	AGCT	1 cut(s)	429
AluI	AGCT	1 cut(s)	429
AlwI	GGATC	1 cut(s)	143
AoxI	GGCC	1 cut(s)	671
ApeKI	GCWGC	1 cut(s)	429
ApoI	RAATTY	1 cut(s)	121
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
Asp700I	GAANNNNTTC	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	510
BbsI	GAAGAC	3 cut(s)	42, 240, 477
BbvI	GCAGC	1 cut(s)	416
BceAI	ACGGC	1 cut(s)	658
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BfoI	RGCGCY	1 cut(s)	514
BisI	GCNGC	1 cut(s)	430
BlsI	GCNGC	1 cut(s)	431
BmgBI	CACGTC	1 cut(s)	112
BmiI	GGNNCC	3 cut(s)	408, 512, 607
BmsI	GCATC	1 cut(s)	566
BpiI	GAAGAC	3 cut(s)	42, 240, 477
BpuEI	CTTGAG	1 cut(s)	566
BsaHI	GRCGYC	1 cut(s)	511
BsaJI	CCNNGG	2 cut(s)	287, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	649
Bse1I	ACTGG	1 cut(s)	514
BseDI	CCNNGG	2 cut(s)	287, 410
BseLI	CCNNNNNNNGG	1 cut(s)	649
BseNI	ACTGG	1 cut(s)	514
BseXI	GCAGC	1 cut(s)	416
BsgI	GTGCAG	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	673
BshNI	GGYRCC	1 cut(s)	510
BsiEI	CGRYCG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	665
BslI	CCNNNNNNNGG	1 cut(s)	649
BsmFI	GGGAC	1 cut(s)	665
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	673
Bsp143I	GATC	4 cut(s)	63, 135, 228, 446
BspACI	CCGC	1 cut(s)	579
BspANI	GGCC	1 cut(s)	673
BspLI	GGNNCC	3 cut(s)	408, 512, 607
BspPI	GGATC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	2 cut(s)	287, 410
BssMI	GATC	4 cut(s)	63, 135, 228, 446
BssNI	GRCGYC	1 cut(s)	511
BssT1I	CCWWGG	1 cut(s)	410
Bst4CI	ACNGT	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	511
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstC8I	GCNNGC	2 cut(s)	92, 627
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	4 cut(s)	66, 138, 231, 449
BstMBI	GATC	4 cut(s)	63, 135, 228, 446
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 366
BstNSI	RCATGY	1 cut(s)	629
BstV1I	GCAGC	1 cut(s)	416
BstV2I	GAAGAC	3 cut(s)	42, 240, 477
BsuRI	GGCC	1 cut(s)	673
BtrI	CACGTC	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	521
Cac8I	GCNNGC	2 cut(s)	92, 627
CfoI	GCGC	1 cut(s)	513
CseI	GACGC	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	69
CspCI	CAANNNNNGTGG	2 cut(s)	551, 586
CviAII	CATG	1 cut(s)	626
CviJI	RGCY	3 cut(s)	429, 608, 673
CviKI_1	RGCY	3 cut(s)	429, 608, 673
CviQI	GTAC	1 cut(s)	69
DinI	GGCGCC	1 cut(s)	512
DpnI	GATC	4 cut(s)	65, 137, 230, 448
DpnII	GATC	4 cut(s)	63, 135, 228, 446
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	410
EgeI	GGCGCC	1 cut(s)	512
EheI	GGCGCC	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	1 cut(s)	629
FaiI	YATR	7 cut(s)	156, 420, 425, 534, 536, 597, 627
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	1 cut(s)	625
FauNDI	CATATG	1 cut(s)	534
Fnu4HI	GCNGC	1 cut(s)	430
Fsp4HI	GCNGC	1 cut(s)	430
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	1 cut(s)	430
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	1 cut(s)	673
HgaI	GACGC	1 cut(s)	483
HhaI	GCGC	1 cut(s)	513
Hin1I	GRCGYC	1 cut(s)	511
Hin1II	CATG	1 cut(s)	629
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	77
HindII	GTYRAC	1 cut(s)	77
HinfI	GANTC	2 cut(s)	237, 245
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	3 cut(s)	77, 274, 380
Hpy188I	TCNGA	3 cut(s)	211, 288, 451
Hpy188III	TCNNGA	1 cut(s)	442
Hpy8I	GTNNAC	3 cut(s)	77, 274, 380
Hpy99I	CGWCG	2 cut(s)	116, 499
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	6 cut(s)	127, 299, 402, 528, 573, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 366
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	511
Hsp92II	CATG	1 cut(s)	629
HspAI	GCGC	1 cut(s)	511
KasI	GGCGCC	1 cut(s)	510
Kzo9I	GATC	4 cut(s)	63, 135, 228, 446
LmnI	GCTCC	1 cut(s)	605
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	1 cut(s)	566
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	4 cut(s)	65, 137, 230, 448
MboI	GATC	4 cut(s)	63, 135, 228, 446
MboII	GAAGA	5 cut(s)	47, 240, 482, 511, 628
MfeI	CAATTG	1 cut(s)	476
MluCI	AATT	3 cut(s)	121, 252, 476
Mly113I	GGCGCC	1 cut(s)	511
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	6 cut(s)	162, 166, 282, 310, 346, 350
MroXI	GAANNNNTTC	1 cut(s)	58
MunI	CAATTG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	96, 366
NarI	GGCGCC	1 cut(s)	511
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	4 cut(s)	63, 135, 228, 446
NlaIII	CATG	1 cut(s)	629
NlaIV	GGNNCC	3 cut(s)	408, 512, 607
NspI	RCATGY	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	629
PctI	GAATGC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	431
Ple19I	CGATCG	1 cut(s)	66
PleI	GAGTC	1 cut(s)	253
PluTI	GGCGCC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	253
PspN4I	GGNNCC	3 cut(s)	408, 512, 607
PvuI	CGATCG	1 cut(s)	66
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SatI	GCNGC	1 cut(s)	430
Sau3AI	GATC	4 cut(s)	63, 135, 228, 446
SchI	GAGTC	1 cut(s)	254
SetI	ASST	7 cut(s)	114, 177, 293, 321, 408, 431, 635
SfaNI	GCATC	1 cut(s)	566
SfoI	GGCGCC	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	3 cut(s)	121, 252, 476
SsiI	CCGC	1 cut(s)	579
SspDI	GGCGCC	1 cut(s)	510
SspI	AATATT	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	7 cut(s)	52, 62, 114, 183, 231, 308, 497
TasI	AATT	3 cut(s)	121, 252, 476
TfiI	GAWTC	1 cut(s)	237
TscAI	CASTG	1 cut(s)	521
TseI	GCWGC	1 cut(s)	429
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	521
XapI	RAATTY	1 cut(s)	121
XceI	RCATGY	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.