Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

8413585 .. 8416627

Gene Structure 3043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G115700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCCCCTCACCACAAATCAGTATTGTATTTCAGTCAGAAGGTGGTGGTGGTTGGAGCTGGAGTTGCCATCTGTGATCGCAGGGACAACTTGATATTCGAAAGTAATAAGAATCTCAAAAGTTTGAATCATTTTGCTGTGCGGAGCAGGAAAACAGAGCTTTTGGCTCTCATTGGCGGCTCTCACTTTGAAATTGAAAAGGGTCATATTTTTTGTGATGATTATCTGATTTACCAATATGTCATGAGCACACTTCCTGGAAGCAGCAAGATTGCGGCATTCGTCAATCAAGTGACTCGTTTGGAAAGAACCTTTGCATATTGCAGCTTGTGTTTAGTGGTGGCATTAAGTTTGCTTCGAAACTTGCAATTTGAAACTATAGCTTCTCAGAGCACCTCCCCTGCAGCAACTTGCAAAGCCATGAGTGTGAAGGAGACTTGTTTGATTTGCTTTGAAGACAATCCTATTGCTCGAATGTTTTCAGTTGGTACTTGTCATCACAAATATTGCTTGTCTTGTATGAAACATCATGTGGAAGTGCAATTGCAAAGCGGGATTGTGGCACAATGCCCTCATAAAGACTGTACGTGTGAAGTGAATACTGAAACCTGTAAAAAATTCTTGTCACCTGAACTTGCTGACATTATGATCGAACGAATCAAGGAATCTTCTATTCCTGTTACCGAGAAAGTGTACTGCACATTTCCGAGGTGTTCTGCGTTGATGTCCAAACAGGAAGTCTTGGAACATACCAAGACTTCTTTTGCTAGTGAGGGAGGCAGGAAGTGCATGAAATGCCATCAGTATTTTTGTATCAATTGCAGGGTGCCTTGGCACTATGATATGAGCTGCTATGATTACCAAAGCTCAGAAACCTATTCCCGCTCAGAAGACCAATTGGTAAAGTCCCTTGCAATGAAGAAACTATGGCGCCAGTGTTCGAAATGCAAACATATGGTTGAACTTGATAGTGGTTGCTACCACATCATTTGCAGATGTGGACATCAGTTTTGCTATACTTGCGGAGCTGAATGGAAGAACAAGAGAGCAACGTGTTCCTGCCCACTCTGGGATGAGCATCACATTATACGGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

366

Amino Acids

41.66

Weight (kDa)

8.48

Isoelectric Point (pI)

62.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	826, 930
AccBSI	CCGCTC	1 cut(s)	885
AciI	CCGC	6 cut(s)	142, 177, 275, 552, 883, 1023
AcoI	YGGCCR	1 cut(s)	1091
AcsI	RAATTY	1 cut(s)	617
AcyI	GRCGYC	1 cut(s)	931
AfaI	GTAC	3 cut(s)	490, 586, 695
AfiI	CCNNNNNNNGG	1 cut(s)	1069
AflIII	ACRYGT	2 cut(s)	587, 1052
AgsI	TTSAA	6 cut(s)	127, 191, 197, 374, 455, 962
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	7 cut(s)	59, 160, 327, 383, 849, 867, 1028
AluI	AGCT	7 cut(s)	59, 160, 327, 383, 849, 867, 1028
Alw21I	GWGCWC	2 cut(s)	251, 395
Alw26I	GTCTC	1 cut(s)	428
AoxI	GGCC	2 cut(s)	3, 1091
ApeKI	GCWGC	4 cut(s)	264, 324, 404, 849
ApoI	RAATTY	1 cut(s)	617
ArsI	GACNNNNNNTTYG	4 cut(s)	723, 755, 993, 1025
Asp700I	GAANNNNTTC	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	933
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	618
AsuII	TTCGAA	3 cut(s)	99, 358, 941
BanI	GGYRCC	2 cut(s)	826, 930
BbsI	GAAGAC	2 cut(s)	462, 897
Bbv12I	GWGCWC	2 cut(s)	251, 395
BbvI	GCAGC	4 cut(s)	276, 336, 416, 836
BccI	CCATC	2 cut(s)	77, 807
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	1 cut(s)	768
BfmI	CTRYAG	2 cut(s)	378, 402
BfoI	RGCGCY	1 cut(s)	934
BisI	GCNGC	6 cut(s)	178, 265, 276, 325, 405, 850
BlsI	GCNGC	6 cut(s)	179, 266, 277, 326, 406, 851
Bme1390I	CCNGG	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 828, 932
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	1087
BpiI	GAAGAC	2 cut(s)	462, 897
BpmI	CTGGAG	1 cut(s)	81
Bpu14I	TTCGAA	3 cut(s)	99, 358, 941
BsaAI	YACGTR	1 cut(s)	588
BsaBI	GATNNNNATC	2 cut(s)	222, 1077
BsaHI	GRCGYC	1 cut(s)	931
BsaJI	CCNNGG	2 cut(s)	707, 830
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	1069
Bse1I	ACTGG	1 cut(s)	934
Bse3DI	GCAATG	1 cut(s)	921
Bse8I	GATNNNNATC	2 cut(s)	222, 1077
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	707, 830
BseGI	GGATG	1 cut(s)	1078
BseJI	GATNNNNATC	2 cut(s)	222, 1077
BseLI	CCNNNNNNNGG	1 cut(s)	1069
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	3 cut(s)	401, 882, 900
BseNI	ACTGG	1 cut(s)	934
BseXI	GCAGC	4 cut(s)	276, 336, 416, 836
BsgI	GTGCAG	1 cut(s)	682
BshFI	GGCC	2 cut(s)	5, 1093
BshNI	GGYRCC	2 cut(s)	826, 930
BsiHKAI	GWGCWC	2 cut(s)	251, 395
BslFI	GGGAC	2 cut(s)	98, 892
BslI	CCNNNNNNNGG	1 cut(s)	1069
BsmAI	GTCTC	1 cut(s)	428
BsmFI	GGGAC	2 cut(s)	98, 892
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	5, 1093
Bsp119I	TTCGAA	3 cut(s)	99, 358, 941
Bsp1286I	GDGCHC	2 cut(s)	251, 395
Bsp143I	GATC	2 cut(s)	76, 648
BspACI	CCGC	6 cut(s)	142, 177, 275, 552, 883, 1023
BspANI	GGCC	2 cut(s)	5, 1093
BspCNI	CTCAG	3 cut(s)	400, 881, 899
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	3 cut(s)	6, 828, 932
BspMAI	CTGCAG	1 cut(s)	406
BspT104I	TTCGAA	3 cut(s)	99, 358, 941
BspT107I	GGYRCC	2 cut(s)	826, 930
BsrBI	CCGCTC	1 cut(s)	885
BsrDI	GCAATG	1 cut(s)	921
BsrI	ACTGG	1 cut(s)	934
BssECI	CCNNGG	2 cut(s)	707, 830
BssMI	GATC	2 cut(s)	76, 648
BssNI	GRCGYC	1 cut(s)	931
BssT1I	CCWWGG	1 cut(s)	830
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	584
BstACI	GRCGYC	1 cut(s)	931
BstAPI	GCANNNNNTGC	2 cut(s)	786, 795
BstBAI	YACGTR	1 cut(s)	588
BstBI	TTCGAA	3 cut(s)	99, 358, 941
BstDEI	CTNAG	3 cut(s)	387, 868, 886
BstF5I	GGATG	1 cut(s)	1078
BstH2I	RGCGCY	1 cut(s)	934
BstHHI	GCGC	1 cut(s)	933
BstKTI	GATC	2 cut(s)	79, 651
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	2 cut(s)	76, 648
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 786, 795, 1020
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	2 cut(s)	378, 402
BstV1I	GCAGC	4 cut(s)	276, 336, 416, 836
BstV2I	GAAGAC	2 cut(s)	462, 897
BsuRI	GGCC	2 cut(s)	5, 1093
BtsCI	GGATG	1 cut(s)	1078
BtsIMutI	CAGTG	1 cut(s)	941
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	933
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	489, 585, 694
CspCI	CAANNNNNGTGG	2 cut(s)	971, 1006
CviAII	CATG	4 cut(s)	244, 421, 530, 790
CviQI	GTAC	3 cut(s)	489, 585, 694
DdeI	CTNAG	3 cut(s)	387, 868, 886
DinI	GGCGCC	1 cut(s)	932
DpnI	GATC	2 cut(s)	78, 650
DpnII	GATC	2 cut(s)	76, 648
EaeI	YGGCCR	1 cut(s)	1091
Eco130I	CCWWGG	1 cut(s)	830
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	830
EgeI	GGCGCC	1 cut(s)	932
EheI	GGCGCC	1 cut(s)	932
ErhI	CCWWGG	1 cut(s)	830
FaeI	CATG	4 cut(s)	247, 424, 533, 793
FaqI	GGGAC	2 cut(s)	98, 892
FatI	CATG	4 cut(s)	243, 420, 529, 789
FauI	CCCGC	2 cut(s)	545, 890
FauNDI	CATATG	1 cut(s)	954
Fnu4HI	GCNGC	6 cut(s)	178, 265, 276, 325, 405, 850
FokI	GGATG	1 cut(s)	1085
Fsp4HI	GCNGC	6 cut(s)	178, 265, 276, 325, 405, 850
FspBI	CTAG	1 cut(s)	768
GlaI	GCGC	1 cut(s)	932
GluI	GCNGC	6 cut(s)	178, 265, 276, 325, 405, 850
GsuI	CTGGAG	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	934
HaeIII	GGCC	2 cut(s)	5, 1093
HhaI	GCGC	1 cut(s)	933
Hin1I	GRCGYC	1 cut(s)	931
Hin1II	CATG	4 cut(s)	247, 424, 533, 793
Hin6I	GCGC	1 cut(s)	931
HinP1I	GCGC	1 cut(s)	931
HinfI	GANTC	5 cut(s)	112, 127, 295, 657, 665
HphI	GGTGA	1 cut(s)	618
Hpy166II	GTNNAC	2 cut(s)	694, 1001
Hpy188I	TCNGA	6 cut(s)	39, 228, 390, 708, 871, 889
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	2 cut(s)	694, 1001
HpyAV	CCTTC	2 cut(s)	34, 424
HpyCH4III	ACNGT	1 cut(s)	584
HpyCH4IV	ACGT	2 cut(s)	587, 1052
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 786, 795, 1020
HpyF3I	CTNAG	3 cut(s)	387, 868, 886
HpySE526I	ACGT	2 cut(s)	587, 1052
Hsp92I	GRCGYC	1 cut(s)	931
Hsp92II	CATG	4 cut(s)	247, 424, 533, 793
HspAI	GCGC	1 cut(s)	931
KasI	GGCGCC	1 cut(s)	930
Kzo9I	GATC	2 cut(s)	76, 648
LmnI	GCTCC	3 cut(s)	56, 144, 1025
Lsp1109I	GCAGC	4 cut(s)	276, 336, 416, 836
LweI	GCATC	1 cut(s)	1087
MaeI	CTAG	1 cut(s)	768
MaeII	ACGT	2 cut(s)	587, 1052
MaeIII	GTNAC	3 cut(s)	292, 624, 679
MalI	GATC	2 cut(s)	78, 650
MbiI	CCGCTC	1 cut(s)	885
MboI	GATC	2 cut(s)	76, 648
MboII	GAAGA	5 cut(s)	467, 660, 902, 931, 1048
MfeI	CAATTG	3 cut(s)	542, 817, 896
MhlI	GDGCHC	2 cut(s)	251, 395
MluCI	AATT	6 cut(s)	192, 368, 542, 617, 817, 896
Mly113I	GGCGCC	1 cut(s)	931
MlyI	GAGTC	1 cut(s)	289
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	6 cut(s)	18, 406, 582, 702, 766, 770
MroXI	GAANNNNTTC	1 cut(s)	478
MseI	TTAA	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	258
MunI	CAATTG	3 cut(s)	542, 817, 896
Mva1269I	GAATGC	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	4 cut(s)	65, 786, 795, 1020
NarI	GGCGCC	1 cut(s)	931
NdeI	CATATG	1 cut(s)	954
NdeII	GATC	2 cut(s)	76, 648
NlaIII	CATG	4 cut(s)	247, 424, 533, 793
NlaIV	GGNNCC	3 cut(s)	6, 828, 932
NmuCI	GTSAC	2 cut(s)	292, 624
NspV	TTCGAA	3 cut(s)	99, 358, 941
PagI	TCATGA	1 cut(s)	243
PctI	GAATGC	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	4 cut(s)	112, 127, 657, 665
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	6 cut(s)	179, 266, 277, 326, 406, 851
PleI	GAGTC	1 cut(s)	289
PluTI	GGCGCC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	588
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	6, 828, 932
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	406
RsaI	GTAC	3 cut(s)	490, 586, 695
RsaNI	GTAC	3 cut(s)	489, 585, 694
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	6 cut(s)	178, 265, 276, 325, 405, 850
Sau3AI	GATC	2 cut(s)	76, 648
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	2 cut(s)	251, 395
SfaNI	GCATC	1 cut(s)	1087
SfcI	CTRYAG	2 cut(s)	378, 402
SfoI	GGCGCC	1 cut(s)	932
SfuI	TTCGAA	3 cut(s)	99, 358, 941
SmiMI	CAYNNNNRTG	1 cut(s)	425
Sse9I	AATT	6 cut(s)	192, 368, 542, 617, 817, 896
SsiI	CCGC	6 cut(s)	142, 177, 275, 552, 883, 1023
SspDI	GGCGCC	1 cut(s)	930
SspI	AATATT	1 cut(s)	506
SspMI	CTAG	1 cut(s)	768
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	830
TaaI	ACNGT	1 cut(s)	584
TaiI	ACGT	2 cut(s)	590, 1055
TaqI	TCGA	5 cut(s)	99, 358, 472, 651, 941
TasI	AATT	6 cut(s)	192, 368, 542, 617, 817, 896
TatI	WGTACW	1 cut(s)	693
TauI	GCSGC	2 cut(s)	180, 278
TfiI	GAWTC	4 cut(s)	112, 127, 657, 665
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	1 cut(s)	941
TseFI	GTSAC	2 cut(s)	292, 624
TseI	GCWGC	4 cut(s)	264, 324, 404, 849
Tsp45I	GTSAC	2 cut(s)	292, 624
TspDTI	ATGAA	3 cut(s)	536, 806, 932
TspRI	CASTG	1 cut(s)	941
XapI	RAATTY	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.