Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024212.1

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

4828 .. 5586

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024212.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atggccacccctgcgtaccgagacgacctccacaccattctctccgagcaacgccgagagctcatggccgccaaaaccctagactccgacctcgacatcgccttcagtctccaaatgcaggaagccatgaccgcctccctctctcaacagccctcgtcttcgcgccctcctccgcctccgcctccgccgctcatccacgacgaatacgacgacgtattggacctcgccgtcgcgctcatgctcgaggacgtccagaaattcgctcaggaatacgacgaccacgagcggtccctcttcgaaataaggcaggcgaaggaagacctcgaccgtcggattcacgatcagaatttcgccgacgaggtccgcaacgtcccggaggactattggagcaagtacggcgattactacgagaagccgtactgtggcgacggcgcgtcttcgtcgtcgtcgaaaccggcggtggagactgagtgtttgagattgtattgcaagggtttggttggtgaagaggtggttagggattcgaaggtggtggtggctggggctggggttgcgatttgtgaccctagagataatctgatattcgaggcgaggaagaatctggaggcgtttgatggtggtgtggtgatgagcaatgaggctgtggagcttgaggctctccttgaagggctcaatacagctctcactctggacttgaaaaatgtcacatttttctgtgatggctacatgctctaccaatacgtgagttttagcatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

252

Amino Acids

28.34

Weight (kDa)

4.38

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AatII	GACGTC	1 cut(s)	252
AccBSI	CCGCTC	2 cut(s)	190, 286
AccII	CGCG	3 cut(s)	163, 233, 434
AciI	CCGC	9 cut(s)	69, 132, 173, 179, 185, 188, 286, 364, 458
AcoI	YGGCCR	2 cut(s)	3, 66
AcsI	RAATTY	2 cut(s)	257, 346
AcuI	CTGAAG	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	3 cut(s)	17, 395, 419
AfiI	CCNNNNNNNGG	2 cut(s)	118, 422
AgsI	TTSAA	2 cut(s)	665, 697
AhdI	GACNNNNNGTC	1 cut(s)	433
AluBI	AGCT	3 cut(s)	61, 649, 680
AluI	AGCT	3 cut(s)	61, 649, 680
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	3 cut(s)	15, 113, 458
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	2 cut(s)	3, 66
ApoI	RAATTY	2 cut(s)	257, 346
ArsI	GACNNNNNNTTYG	2 cut(s)	457, 489
AspLEI	GCGC	3 cut(s)	165, 235, 434
AspS9I	GGNCC	3 cut(s)	220, 288, 361
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	515, 637
AsuII	TTCGAA	2 cut(s)	297, 524
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	3 cut(s)	220, 288, 361
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	63, 672
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	3 cut(s)	150, 324, 429
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	2 cut(s)	608, 713
BceAI	ACGGC	4 cut(s)	212, 400, 412, 445
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	3 cut(s)	15, 113, 458
BfaI	CTAG	3 cut(s)	80, 567, 757
BisI	GCNGC	2 cut(s)	69, 188
BlsI	GCNGC	2 cut(s)	70, 189
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	3 cut(s)	220, 288, 361
BmeRI	GACNNNNNGTC	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	3 cut(s)	220, 288, 361
BmiI	GGNNCC	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	374
BpiI	GAAGAC	3 cut(s)	150, 324, 429
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpmI	CTGGAG	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	264
Bpu14I	TTCGAA	2 cut(s)	297, 524
BpuEI	CTTGAG	1 cut(s)	671
BpuMI	CCSGG	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	742
BsaHI	GRCGYC	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 422
Bse118I	RCCGGY	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	640
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	118, 422
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	2 cut(s)	278, 459
BseRI	GAGGAG	1 cut(s)	159
BseYI	CCCAGC	2 cut(s)	539, 545
Bsh1236I	CGCG	3 cut(s)	163, 233, 434
Bsh1285I	CGRYCG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	5, 68
BsiEI	CGRYCG	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	374, 455
BslFI	GGGAC	2 cut(s)	274, 356
BslI	CCNNNNNNNGG	2 cut(s)	118, 422
BsmAI	GTCTC	3 cut(s)	15, 113, 458
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	2 cut(s)	274, 356
BsnI	GGCC	2 cut(s)	5, 68
BsoBI	CYCGRG	1 cut(s)	242
Bsp119I	TTCGAA	2 cut(s)	297, 524
Bsp1286I	GDGCHC	2 cut(s)	63, 672
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	9 cut(s)	69, 132, 173, 179, 185, 188, 286, 364, 458
BspANI	GGCC	2 cut(s)	5, 68
BspCNI	CTCAG	2 cut(s)	277, 460
BspFNI	CGCG	3 cut(s)	163, 233, 434
BspLI	GGNNCC	1 cut(s)	290
BspT104I	TTCGAA	2 cut(s)	297, 524
BsrBI	CCGCTC	2 cut(s)	190, 286
BsrDI	GCAATG	1 cut(s)	640
BsrFI	RCCGGY	1 cut(s)	454
BssAI	RCCGGY	1 cut(s)	454
BssMI	GATC	1 cut(s)	340
BssNI	GRCGYC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	329, 422
Bst6I	CTCTTC	2 cut(s)	299, 501
BstACI	GRCGYC	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	742
BstBI	TTCGAA	2 cut(s)	297, 524
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	264, 468
BstF5I	GGATG	1 cut(s)	192
BstFNI	CGCG	3 cut(s)	163, 233, 434
BstHHI	GCGC	3 cut(s)	165, 235, 434
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	3 cut(s)	15, 113, 458
BstMBI	GATC	1 cut(s)	340
BstMCI	CGRYCG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 131, 187, 396, 551
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	1 cut(s)	372
BstUI	CGCG	3 cut(s)	163, 233, 434
BstV2I	GAAGAC	3 cut(s)	150, 324, 429
BsuRI	GGCC	2 cut(s)	5, 68
BtgZI	GCGATG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	309
CfoI	GCGC	3 cut(s)	165, 235, 434
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	3 cut(s)	220, 288, 361
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	3 cut(s)	16, 394, 418
CviAII	CATG	4 cut(s)	64, 127, 238, 727
CviQI	GTAC	3 cut(s)	16, 394, 418
DdeI	CTNAG	2 cut(s)	264, 468
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
DrdI	GACNNNNNNGTC	1 cut(s)	227
DriI	GACNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	2 cut(s)	3, 66
Eam1104I	CTCTTC	2 cut(s)	299, 501
Eam1105I	GACNNNNNGTC	1 cut(s)	433
EarI	CTCTTC	2 cut(s)	299, 501
EciI	GGCGGA	3 cut(s)	162, 168, 174
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	63, 672
Eco47I	GGWCC	3 cut(s)	220, 288, 361
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	61
EcoT38I	GRGCYC	2 cut(s)	63, 672
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	4 cut(s)	67, 130, 241, 730
FaiI	YATR	4 cut(s)	65, 128, 239, 728
FaqI	GGGAC	2 cut(s)	274, 356
FatI	CATG	4 cut(s)	63, 126, 237, 726
Fnu4HI	GCNGC	2 cut(s)	69, 188
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	2 cut(s)	63, 672
Fsp4HI	GCNGC	2 cut(s)	69, 188
FspBI	CTAG	3 cut(s)	80, 567, 757
GlaI	GCGC	3 cut(s)	164, 234, 433
GluI	GCNGC	2 cut(s)	69, 188
GsaI	CCCAGC	2 cut(s)	543, 549
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	2 cut(s)	5, 68
HapII	CCGG	2 cut(s)	374, 455
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	3 cut(s)	165, 235, 434
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	4 cut(s)	67, 130, 241, 730
Hin6I	GCGC	3 cut(s)	163, 233, 432
HinP1I	GCGC	3 cut(s)	163, 233, 432
HinfI	GANTC	4 cut(s)	83, 334, 521, 598
HpaII	CCGG	2 cut(s)	374, 455
HphI	GGTGA	2 cut(s)	515, 637
Hpy188I	TCNGA	5 cut(s)	46, 88, 333, 345, 579
Hpy188III	TCNNGA	5 cut(s)	253, 266, 338, 602, 689
HpyAV	CCTTC	4 cut(s)	112, 307, 520, 659
HpyCH4III	ACNGT	2 cut(s)	329, 422
HpyCH4IV	ACGT	4 cut(s)	213, 249, 369, 741
HpyCH4V	TGCA	2 cut(s)	118, 489
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 131, 187, 396, 551
HpyF3I	CTNAG	2 cut(s)	264, 468
HpySE526I	ACGT	4 cut(s)	213, 249, 369, 741
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	67, 130, 241, 730
HspAI	GCGC	3 cut(s)	163, 233, 432
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	2 cut(s)	387, 646
MaeI	CTAG	3 cut(s)	80, 567, 757
MaeII	ACGT	4 cut(s)	213, 249, 369, 741
MaeIII	GTNAC	2 cut(s)	560, 703
MalI	GATC	1 cut(s)	342
MbiI	CCGCTC	2 cut(s)	190, 286
MboI	GATC	1 cut(s)	340
MboII	GAAGA	6 cut(s)	150, 286, 329, 429, 518, 607
MhlI	GDGCHC	2 cut(s)	63, 672
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	257, 346
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	111, 311
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	374, 455
MspR9I	CCNGG	1 cut(s)	374
MvnI	CGCG	3 cut(s)	163, 233, 434
MwoI	GCNNNNNNNGC	5 cut(s)	11, 131, 187, 396, 551
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	4 cut(s)	67, 130, 241, 730
NlaIV	GGNNCC	1 cut(s)	290
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	2 cut(s)	560, 703
NspI	RCATGY	1 cut(s)	730
NspV	TTCGAA	2 cut(s)	297, 524
PaeR7I	CTCGAG	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	4 cut(s)	204, 207, 279, 446
PfeI	GAWTC	3 cut(s)	334, 521, 598
PflFI	GACNNNGTC	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	372
PkrI	GCNGC	2 cut(s)	70, 189
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	742
Psp124BI	GAGCTC	1 cut(s)	63
PspFI	CCCAGC	2 cut(s)	539, 545
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	3 cut(s)	220, 288, 361
PspXI	VCTCGAGB	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	3 cut(s)	17, 395, 419
RsaNI	GTAC	3 cut(s)	16, 394, 418
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	2 cut(s)	69, 188
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	3 cut(s)	220, 288, 361
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	63, 672
Sfr274I	CTCGAG	1 cut(s)	242
SfuI	TTCGAA	2 cut(s)	297, 524
SinI	GGWCC	3 cut(s)	220, 288, 361
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	242, 650
SmoI	CTYRAG	2 cut(s)	242, 650
Sse9I	AATT	2 cut(s)	257, 346
SsiI	CCGC	9 cut(s)	69, 132, 173, 179, 185, 188, 286, 364, 458
SspMI	CTAG	3 cut(s)	80, 567, 757
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	329, 422
TaiI	ACGT	4 cut(s)	216, 252, 372, 744
TaqI	TCGA	7 cut(s)	93, 243, 297, 324, 449, 524, 585
TasI	AATT	2 cut(s)	257, 346
TauI	GCSGC	2 cut(s)	71, 190
TfiI	GAWTC	3 cut(s)	334, 521, 598
TseFI	GTSAC	2 cut(s)	560, 703
Tsp45I	GTSAC	2 cut(s)	560, 703
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	3 cut(s)	220, 288, 361
XapI	RAATTY	2 cut(s)	257, 346
XceI	RCATGY	1 cut(s)	730
XhoI	CTCGAG	1 cut(s)	242
XspI	CTAG	3 cut(s)	80, 567, 757
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.