Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

66117498 .. 66122060

Gene Structure 4563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33731

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

ATGGCCAGTACCAGCGGAGTCCCCCGCTCCGATCACCGCCGCGACGACGACGACGACTTCATGGACATTGATACGCTCGACTACGACACCGAAATCGCCTTCAACCTCCAACTCCAAGAAGCCCTAACCGCCTCCCTCGCCCCTCAACCACCCTCCTCCGCCGCCCGTAACGACGCCGCGTCGGTACTCGTCCGACTGGAGCAGGCTCTGAAAGACCGCGTGCATAGCGAGATCGAACTGCGGCGGGTGAGGGACGATCTCGCGCGTGTGATTCACGATGCCAAGGTCGCGAGGGAGATCGCGGACATTCCCGACGACGAGTGGGAAAAGTCCGGCGGCGACTTTGCCAAGCCCTTCGACGGCGGCTCGTCGGCGGCGGAGGCGGCGGCGGCGAGTGTGGAGAGCGAGTTCAGGCTCTATTTCAAGGGTTTGGTGAGCGAGGAACAGGTTGGGGATCGGAAATTGGTGCTGGCCGGGATCGGAGTAGCGATATGCGACCCCAGGGATAATCTGGTGTTCGAGGTTAGGAAACCGCTGATTGGGAATGGGCTTAGTAGAAATTCGGCCCAATTGAAGGCCTTGATCGAAGGGCTCACTGCTGCTCTGTCTTTGGGGCTGAAGCGAATCTCCTTCTTCTGCGATAATTATCCAATCTTTCAGTTTGTTAATGGGAAATGGCCAGCAAAGCAGCGCAAGGTTGTAAATCTTGTTAATCAGGTTAAGAGCCTTCGAAGCAAGTTTACACAGTGTAATTCCAGGCTTGTGCCTCGGTTGGAAATTAAGTTTGCATTTAAACTTGCAAGAGATGCCATAGAGTCTCAGTCTCTGTCTCAGATGAAGCCTGCAGAATCTACCACTCACAAGAATGTGAAAGAGACTTGCGTGATTTGTATGGAAGATAGTGATGTTAGTCAGATGTTTTCAGTTGATGGCTGCCTACATCGATATTGCTATTCTTGTATGAAACAGCATGTGGAGGTGAAGTTGCTTCATGGGATCCTTCCTAAATGCCCTCATGAAGACTGTAAGTCTGACCTTAGTGTCGACAGTTGTGCGAAATTCTTGACACCTAAACATGTTGACACTATGCGTCAACGTATAAAGGAAGCTTCAATTCCTGCAACTGAGAGAGTTTATTGCCCATATCCAAGGTGCTCTCTCTTAATGTCAAAAAGCGAGGTTTTACAACATGCTAAGAAAACCTTGATGGGGGCTGTGGAACAATCAGGGCTTAGGAGATGCATGAAATGTCACTACCTTTTTTGCATCAATTGTAAAGTCCCTTGGCACAGAAACATCACATGCGCTGACTACAAAAAGTCGAATCCTAATCCTCCAGAAGAGGACACAAAGCTAAAGTTCCTTGCCTCTAGTAAGCTTTGGCGCCAATGTGTGAAGTGCAGCCATATGATTGAACTTCTTGAAGGTTGCTACCACATGACTTGCAGGTGTAATTATGAGTTCTGCTATAATTGTGGAGCTGAGTGGAAAGACAAGAAGGCAACATGTACATGCCCGCTGTGGATTGAGGATAATATTTTGCATGAGGATGATGATTTTGATGGAGAGTCGGATTCTGAATCTGAAGTTGAATTTGTAAGTGAGCATGATGGTTGCCATTATTGTGGAGCTGAGTGGAAAGACAGAAAGGCAACATGTTCATGCCCACTATCAGATGAGGATAGCAGTTCGGATGGCCAAGTTGATAAATATTTTGAGGAGGAAGAAGATGATGATGAAGATGAGGACTACAATGATGATGAATATCAAAGTGAAGATGAGGAGGAAAAAGAAGTTGGAGGTCATAAGTATGAAAACAATAGTGAAGATGAATATGAAAGTGAAAGCGGTGTAAGTGAGGAAGAGGTTCAGGAGAGACAGGTTCAAGAGCAGTTTTTGGGGAAAGATATCGAGAATCAGATCTTGTCTGATGAAGGTGAATATTATGGGGTGGAGGAAGAAGAAGATGACAACAACGGCGAGGACTTCAATAATAGTGAGTGTCAAAGTGAGGATGAGGAGGAAAATGAAGTTGGGGGTGATGAATATGAAAACGAAGGCATTGTAGTTGAGGATGAGGTGCAGGAGGGACAGATTCAAGAGGAGGTTTTGGACATGGATATGGGGGATCATATCTCGTCCTATGACGATGATATATATTTTGATGTAGAGTATGAGGAAGATGAAGAGGAGAACTATTGTGACTTCGATTGTTGTGACTCTGACTTGGATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

745

Amino Acids

84.88

Weight (kDa)

4.43

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	157 - 270	6e-26	Reverse transcriptase-like
IBR	PF01485	374 - 435	1.5e-10	IBR domain, a half RING-finger domain
IBR	PF01485	453 - 503	2.3e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	463 - 500	3.4e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1437
AasI	GACNNNNNNGTC	1 cut(s)	1040
Acc36I	ACCTGC	1 cut(s)	1437
AccB1I	GGYRCC	1 cut(s)	1383
AccBSI	CCGCTC	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	1044
AccII	CGCG	7 cut(s)	42, 179, 219, 263, 265, 290, 302
AclWI	GGATC	5 cut(s)	462, 485, 991, 1004, 2136
AcoI	YGGCCR	4 cut(s)	3, 471, 677, 1696
AcsI	RAATTY	3 cut(s)	559, 1058, 1592
AcuI	CTGAAG	2 cut(s)	638, 1605
AcyI	GRCGYC	2 cut(s)	174, 1384
AfaI	GTAC	3 cut(s)	10, 186, 1510
AfiI	CCNNNNNNNGG	4 cut(s)	359, 539, 574, 1209
AflIII	ACRYGT	3 cut(s)	1075, 1505, 1655
AhdI	GACNNNNNGTC	2 cut(s)	178, 1027
AjnI	CCWGG	2 cut(s)	500, 755
AjuI	GAANNNNNNNTTGG	4 cut(s)	1779, 1811, 2016, 2048
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	5 cut(s)	1109, 1354, 1378, 1481, 1631
AluI	AGCT	5 cut(s)	1109, 1354, 1378, 1481, 1631
Alw21I	GWGCWC	1 cut(s)	1157
Alw26I	GTCTC	5 cut(s)	822, 828, 834, 869, 1870
AlwI	GGATC	5 cut(s)	462, 485, 991, 1004, 2136
AlwNI	CAGNNNCTG	2 cut(s)	208, 826
AoxI	GGCC	6 cut(s)	3, 471, 564, 576, 677, 1696
ApeKI	GCWGC	4 cut(s)	599, 688, 933, 1401
ApoI	RAATTY	3 cut(s)	559, 1058, 1592
Asp700I	GAANNNNTTC	1 cut(s)	1866
AspLEI	GCGC	4 cut(s)	265, 693, 1307, 1386
AspS9I	GGNCC	1 cut(s)	565
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	6 cut(s)	26, 259, 445, 991, 1949, 2051
AsuII	TTCGAA	1 cut(s)	730
BalI	TGGCCA	3 cut(s)	5, 679, 1698
BamHI	GGATCC	1 cut(s)	996
BanI	GGYRCC	1 cut(s)	1383
BanII	GRGCYC	1 cut(s)	594
BarI	GAAGNNNNNNTAC	2 cut(s)	724, 756
BbsI	GAAGAC	1 cut(s)	1026
Bbv12I	GWGCWC	1 cut(s)	1157
BbvI	GCAGC	4 cut(s)	586, 700, 920, 1413
BccI	CCATC	5 cut(s)	923, 1201, 1556, 1604, 1688
BceAI	ACGGC	2 cut(s)	376, 1993
BcgI	CGANNNNNNTGC	2 cut(s)	1034, 1068
BciT130I	CCWGG	2 cut(s)	502, 757
BcnI	CCSGG	1 cut(s)	475
BcoDI	GTCTC	5 cut(s)	822, 828, 834, 869, 1870
BfaI	CTAG	1 cut(s)	1371
BfmI	CTRYAG	1 cut(s)	843
BfoI	RGCGCY	1 cut(s)	1387
BfuAI	ACCTGC	1 cut(s)	1437
BglII	AGATCT	1 cut(s)	1920
Bme1390I	CCNGG	3 cut(s)	475, 502, 757
BmeRI	GACNNNNNGTC	2 cut(s)	178, 1027
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	2 cut(s)	998, 1385
BmrFI	CCNGG	3 cut(s)	475, 502, 757
BmsI	GCATC	4 cut(s)	268, 796, 1229, 1275
BpiI	GAAGAC	1 cut(s)	1026
BpmI	CTGGAG	2 cut(s)	218, 1320
Bpu10I	CCTNAGC	1 cut(s)	1232
Bpu14I	TTCGAA	1 cut(s)	730
BpuMI	CCSGG	1 cut(s)	475
Bsa29I	ATCGAT	1 cut(s)	943
BsaBI	GATNNNNATC	2 cut(s)	645, 1764
BsaHI	GRCGYC	2 cut(s)	174, 1384
BsaJI	CCNNGG	6 cut(s)	282, 500, 501, 767, 1148, 1283
BsaXI	ACNNNNNCTCC	4 cut(s)	392, 422, 968, 998
Bsc4I	CCNNNNNNNGG	4 cut(s)	359, 539, 574, 1209
Bse1I	ACTGG	2 cut(s)	6, 201
Bse8I	GATNNNNATC	2 cut(s)	645, 1764
BseBI	CCWGG	2 cut(s)	502, 757
BseCI	ATCGAT	1 cut(s)	943
BseDI	CCNNGG	6 cut(s)	282, 500, 501, 767, 1148, 1283
BseGI	GGATG	4 cut(s)	1555, 1699, 2020, 2080
BseJI	GATNNNNATC	2 cut(s)	645, 1764
BseLI	CCNNNNNNNGG	4 cut(s)	359, 539, 574, 1209
BseMII	CTCAG	5 cut(s)	833, 845, 1116, 1473, 1623
BseNI	ACTGG	2 cut(s)	6, 201
BseRI	GAGGAG	6 cut(s)	145, 1733, 1796, 2033, 2117, 2204
BseXI	GCAGC	4 cut(s)	586, 700, 920, 1413
BsgI	GTGCAG	2 cut(s)	1420, 2102
Bsh1236I	CGCG	7 cut(s)	42, 179, 219, 263, 265, 290, 302
BshFI	GGCC	6 cut(s)	5, 473, 566, 578, 679, 1698
BshNI	GGYRCC	1 cut(s)	1383
BshVI	ATCGAT	1 cut(s)	943
BsiHKAI	GWGCWC	1 cut(s)	1157
BsiSI	CCGG	2 cut(s)	333, 474
BslFI	GGGAC	4 cut(s)	5, 266, 1265, 2103
BslI	CCNNNNNNNGG	4 cut(s)	359, 539, 574, 1209
BsmAI	GTCTC	5 cut(s)	822, 828, 834, 869, 1870
BsmFI	GGGAC	4 cut(s)	5, 266, 1265, 2103
BsnI	GGCC	6 cut(s)	5, 473, 566, 578, 679, 1698
Bsp119I	TTCGAA	1 cut(s)	730
Bsp1286I	GDGCHC	2 cut(s)	594, 1157
Bsp1407I	TGTACA	1 cut(s)	1508
Bsp68I	TCGCGA	1 cut(s)	290
BspANI	GGCC	6 cut(s)	5, 473, 566, 578, 679, 1698
BspCNI	CTCAG	5 cut(s)	832, 844, 1117, 1474, 1624
BspDI	ATCGAT	1 cut(s)	943
BspFNI	CGCG	7 cut(s)	42, 179, 219, 263, 265, 290, 302
BspHI	TCATGA	1 cut(s)	1015
BspLI	GGNNCC	2 cut(s)	998, 1385
BspMAI	CTGCAG	1 cut(s)	847
BspMI	ACCTGC	1 cut(s)	1437
BspPI	GGATC	5 cut(s)	462, 485, 991, 1004, 2136
BspT104I	TTCGAA	1 cut(s)	730
BspT107I	GGYRCC	1 cut(s)	1383
BsrBI	CCGCTC	1 cut(s)	27
BsrGI	TGTACA	1 cut(s)	1508
BsrI	ACTGG	2 cut(s)	6, 201
BssECI	CCNNGG	6 cut(s)	282, 500, 501, 767, 1148, 1283
BssNI	GRCGYC	2 cut(s)	174, 1384
BssT1I	CCWWGG	3 cut(s)	282, 1148, 1283
Bst2UI	CCWGG	2 cut(s)	502, 757
Bst4CI	ACNGT	3 cut(s)	747, 1025, 1049
Bst6I	CTCTTC	3 cut(s)	1335, 1857, 2181
BstACI	GRCGYC	2 cut(s)	174, 1384
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstAUI	TGTACA	1 cut(s)	1508
BstBI	TTCGAA	1 cut(s)	730
BstC8I	GCNNGC	6 cut(s)	204, 221, 471, 681, 843, 1517
BstDEI	CTNAG	9 cut(s)	551, 819, 831, 1037, 1125, 1194, 1232, 1482, 1632
BstF5I	GGATG	4 cut(s)	1555, 1699, 2020, 2080
BstFNI	CGCG	7 cut(s)	42, 179, 219, 263, 265, 290, 302
BstH2I	RGCGCY	1 cut(s)	1387
BstHHI	GCGC	4 cut(s)	265, 693, 1307, 1386
BstMAI	GTCTC	5 cut(s)	822, 828, 834, 869, 1870
BstNI	CCWGG	2 cut(s)	502, 757
BstNSI	RCATGY	7 cut(s)	974, 1079, 1193, 1305, 1509, 1515, 1659
BstSCI	CCNGG	3 cut(s)	473, 500, 755
BstSFI	CTRYAG	1 cut(s)	843
BstUI	CGCG	7 cut(s)	42, 179, 219, 263, 265, 290, 302
BstV1I	GCAGC	4 cut(s)	586, 700, 920, 1413
BstV2I	GAAGAC	1 cut(s)	1026
BstX2I	RGATCY	2 cut(s)	996, 1920
BstXI	CCANNNNNNTGG	1 cut(s)	1625
BstYI	RGATCY	2 cut(s)	996, 1920
Bsu15I	ATCGAT	1 cut(s)	943
BsuRI	GGCC	6 cut(s)	5, 473, 566, 578, 679, 1698
BsuTUI	ATCGAT	1 cut(s)	943
BtsCI	GGATG	4 cut(s)	1555, 1699, 2020, 2080
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	2 cut(s)	594, 752
BtuMI	TCGCGA	1 cut(s)	290
BveI	ACCTGC	1 cut(s)	1437
Cac8I	GCNNGC	6 cut(s)	204, 221, 471, 681, 843, 1517
CaiI	CAGNNNCTG	2 cut(s)	208, 826
CciI	TCATGA	1 cut(s)	1015
CfoI	GCGC	4 cut(s)	265, 693, 1307, 1386
Cfr13I	GGNCC	1 cut(s)	565
ClaI	ATCGAT	1 cut(s)	943
CseI	GACGC	3 cut(s)	168, 182, 1079
Csp6I	GTAC	3 cut(s)	9, 185, 1509
CspCI	CAANNNNNGTGG	2 cut(s)	1424, 1459
CviQI	GTAC	3 cut(s)	9, 185, 1509
DdeI	CTNAG	9 cut(s)	551, 819, 831, 1037, 1125, 1194, 1232, 1482, 1632
DinI	GGCGCC	1 cut(s)	1385
DraI	TTTAAA	1 cut(s)	793
DrdI	GACNNNNNNGTC	1 cut(s)	1040
DriI	GACNNNNNGTC	2 cut(s)	178, 1027
DseDI	GACNNNNNNGTC	1 cut(s)	1040
EaeI	YGGCCR	4 cut(s)	3, 471, 677, 1696
Eam1104I	CTCTTC	3 cut(s)	1335, 1857, 2181
Eam1105I	GACNNNNNGTC	2 cut(s)	178, 1027
EarI	CTCTTC	3 cut(s)	1335, 1857, 2181
EciI	GGCGGA	2 cut(s)	148, 392
Eco130I	CCWWGG	3 cut(s)	282, 1148, 1283
Eco147I	AGGCCT	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	594
Eco32I	GATATC	1 cut(s)	1909
Eco57I	CTGAAG	2 cut(s)	638, 1605
EcoRII	CCWGG	2 cut(s)	500, 755
EcoRV	GATATC	1 cut(s)	1909
EcoT14I	CCWWGG	3 cut(s)	282, 1148, 1283
EcoT22I	ATGCAT	1 cut(s)	1244
EcoT38I	GRGCYC	1 cut(s)	594
EgeI	GGCGCC	1 cut(s)	1385
EheI	GGCGCC	1 cut(s)	1385
ErhI	CCWWGG	3 cut(s)	282, 1148, 1283
FalI	AAGNNNNNCTT	2 cut(s)	1187, 1219
FaqI	GGGAC	4 cut(s)	5, 266, 1265, 2103
FauI	CCCGC	3 cut(s)	32, 237, 1524
FauNDI	CATATG	1 cut(s)	1407
FblI	GTMKAC	1 cut(s)	1044
FokI	GGATG	4 cut(s)	1562, 1706, 2027, 2087
FriOI	GRGCYC	1 cut(s)	594
FspBI	CTAG	1 cut(s)	1371
GlaI	GCGC	4 cut(s)	264, 692, 1306, 1385
GsuI	CTGGAG	2 cut(s)	218, 1320
HaeII	RGCGCY	1 cut(s)	1387
HaeIII	GGCC	6 cut(s)	5, 473, 566, 578, 679, 1698
HapII	CCGG	2 cut(s)	333, 474
HgaI	GACGC	3 cut(s)	168, 182, 1079
HhaI	GCGC	4 cut(s)	265, 693, 1307, 1386
Hin1I	GRCGYC	2 cut(s)	174, 1384
Hin6I	GCGC	4 cut(s)	263, 691, 1305, 1384
HinP1I	GCGC	4 cut(s)	263, 691, 1305, 1384
HincII	GTYRAC	3 cut(s)	1045, 1081, 1094
HindII	GTYRAC	3 cut(s)	1045, 1081, 1094
HindIII	AAGCTT	2 cut(s)	1107, 1376
HpaII	CCGG	2 cut(s)	333, 474
HphI	GGTGA	6 cut(s)	26, 259, 445, 991, 1949, 2051
Hpy166II	GTNNAC	4 cut(s)	741, 1045, 1081, 1094
Hpy8I	GTNNAC	4 cut(s)	741, 1045, 1081, 1094
HpyCH4III	ACNGT	3 cut(s)	747, 1025, 1049
HpyCH4IV	ACGT	1 cut(s)	1096
HpyF3I	CTNAG	9 cut(s)	551, 819, 831, 1037, 1125, 1194, 1232, 1482, 1632
HpySE526I	ACGT	1 cut(s)	1096
Hsp92I	GRCGYC	2 cut(s)	174, 1384
HspAI	GCGC	4 cut(s)	263, 691, 1305, 1384
KasI	GGCGCC	1 cut(s)	1383
LmnI	GCTCC	4 cut(s)	32, 199, 1478, 1628
Lsp1109I	GCAGC	4 cut(s)	586, 700, 920, 1413
LweI	GCATC	4 cut(s)	268, 796, 1229, 1275
MaeI	CTAG	1 cut(s)	1371
MaeII	ACGT	1 cut(s)	1096
MaeIII	GTNAC	4 cut(s)	167, 1250, 2201, 2216
MbiI	CCGCTC	1 cut(s)	27
MfeI	CAATTG	2 cut(s)	569, 1270
MflI	RGATCY	2 cut(s)	996, 1920
MhlI	GDGCHC	2 cut(s)	594, 1157
MlsI	TGGCCA	3 cut(s)	5, 679, 1698
MluNI	TGGCCA	3 cut(s)	5, 679, 1698
Mly113I	GGCGCC	1 cut(s)	1384
MlyI	GAGTC	4 cut(s)	27, 824, 1577, 2213
MmeI	TCCRAC	5 cut(s)	133, 217, 753, 1551, 1777
Mox20I	TGGCCA	3 cut(s)	5, 679, 1698
Mph1103I	ATGCAT	1 cut(s)	1244
MroXI	GAANNNNTTC	1 cut(s)	1866
MscI	TGGCCA	3 cut(s)	5, 679, 1698
MseI	TTAA	7 cut(s)	666, 711, 720, 780, 792, 1163, 2236
MslI	CAYNNNNRTG	7 cut(s)	864, 1510, 1548, 1623, 1660, 1809, 2120
Msp20I	TGGCCA	3 cut(s)	5, 679, 1698
MspA1I	CMGCKG	3 cut(s)	15, 535, 1519
MspI	CCGG	2 cut(s)	333, 474
MspR9I	CCNGG	3 cut(s)	475, 502, 757
MunI	CAATTG	2 cut(s)	569, 1270
MvaI	CCWGG	2 cut(s)	502, 757
MvnI	CGCG	7 cut(s)	42, 179, 219, 263, 265, 290, 302
NarI	GGCGCC	1 cut(s)	1384
NciI	CCSGG	1 cut(s)	475
NdeI	CATATG	1 cut(s)	1407
NlaIV	GGNNCC	2 cut(s)	998, 1385
NmuCI	GTSAC	3 cut(s)	1250, 2201, 2216
NruI	TCGCGA	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	1244
NspI	RCATGY	7 cut(s)	974, 1079, 1193, 1305, 1509, 1515, 1659
NspV	TTCGAA	1 cut(s)	730
PagI	TCATGA	1 cut(s)	1015
PaqCI	CACCTGC	1 cut(s)	1437
PasI	CCCWGGG	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	578
PciI	ACATGT	3 cut(s)	1075, 1505, 1655
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	1866
PfeI	GAWTC	8 cut(s)	271, 624, 848, 1324, 1574, 1580, 1915, 2095
PleI	GAGTC	4 cut(s)	26, 823, 1576, 2213
PluTI	GGCGCC	1 cut(s)	1387
PpsI	GAGTC	4 cut(s)	26, 823, 1576, 2213
PscI	ACATGT	3 cut(s)	1075, 1505, 1655
Psp6I	CCWGG	2 cut(s)	500, 755
PspGI	CCWGG	2 cut(s)	500, 755
PspN4I	GGNNCC	2 cut(s)	998, 1385
PspPI	GGNCC	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	847
PstNI	CAGNNNCTG	2 cut(s)	208, 826
PsuI	RGATCY	2 cut(s)	996, 1920
RruI	TCGCGA	1 cut(s)	290
RsaI	GTAC	3 cut(s)	10, 186, 1510
RsaNI	GTAC	3 cut(s)	9, 185, 1509
RseI	CAYNNNNRTG	7 cut(s)	864, 1510, 1548, 1623, 1660, 1809, 2120
SalI	GTCGAC	1 cut(s)	1043
SaqAI	TTAA	7 cut(s)	666, 711, 720, 780, 792, 1163, 2236
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	4 cut(s)	27, 824, 1577, 2213
ScrFI	CCNGG	3 cut(s)	475, 502, 757
SduI	GDGCHC	2 cut(s)	594, 1157
SfaNI	GCATC	4 cut(s)	268, 796, 1229, 1275
SfcI	CTRYAG	1 cut(s)	843
SfoI	GGCGCC	1 cut(s)	1385
SfuI	TTCGAA	1 cut(s)	730
SmiMI	CAYNNNNRTG	7 cut(s)	864, 1510, 1548, 1623, 1660, 1809, 2120
SseBI	AGGCCT	1 cut(s)	578
SspDI	GGCGCC	1 cut(s)	1383
SspI	AATATT	3 cut(s)	1537, 1712, 1943
SspMI	CTAG	1 cut(s)	1371
StuI	AGGCCT	1 cut(s)	578
StyD4I	CCNGG	3 cut(s)	473, 500, 755
StyI	CCWWGG	3 cut(s)	282, 1148, 1283
TaaI	ACNGT	3 cut(s)	747, 1025, 1049
TaiI	ACGT	1 cut(s)	1099
TatI	WGTACW	1 cut(s)	1508
TfiI	GAWTC	8 cut(s)	271, 624, 848, 1324, 1574, 1580, 1915, 2095
Tru1I	TTAA	7 cut(s)	666, 711, 720, 780, 792, 1163, 2236
Tru9I	TTAA	7 cut(s)	666, 711, 720, 780, 792, 1163, 2236
TscAI	CASTG	2 cut(s)	601, 752
TseFI	GTSAC	3 cut(s)	1250, 2201, 2216
TseI	GCWGC	4 cut(s)	599, 688, 933, 1401
Tsp45I	GTSAC	3 cut(s)	1250, 2201, 2216
TspRI	CASTG	2 cut(s)	601, 752
XapI	RAATTY	3 cut(s)	559, 1058, 1592
XceI	RCATGY	7 cut(s)	974, 1079, 1193, 1305, 1509, 1515, 1659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	1044
XmnI	GAANNNNTTC	1 cut(s)	1866
XspI	CTAG	1 cut(s)	1371
Zsp2I	ATGCAT	1 cut(s)	1244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.