E3 ubiquitin-protein ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 157 - 225 | 1.1e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 158 |
| AatII | GACGTC | 1 cut(s) | 183 |
| AccBSI | CCGCTC | 2 cut(s) | 121, 217 |
| AccII | CGCG | 3 cut(s) | 164, 194, 365 |
| AciI | CCGC | 7 cut(s) | 69, 110, 116, 119, 217, 295, 389 |
| AcoI | YGGCCR | 1 cut(s) | 156 |
| AcsI | RAATTY | 2 cut(s) | 188, 277 |
| AcuI | CTGAAG | 1 cut(s) | 25 |
| AcyI | GRCGYC | 2 cut(s) | 6, 180 |
| AfaI | GTAC | 3 cut(s) | 303, 326, 350 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 55, 353 |
| AgsI | TTSAA | 3 cut(s) | 456, 596, 628 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 364 |
| AjnI | CCWGG | 1 cut(s) | 153 |
| AluBI | AGCT | 2 cut(s) | 580, 611 |
| AluI | AGCT | 2 cut(s) | 580, 611 |
| Alw26I | GTCTC | 2 cut(s) | 50, 389 |
| Ama87I | CYCGRG | 1 cut(s) | 173 |
| AoxI | GGCC | 1 cut(s) | 156 |
| ApoI | RAATTY | 2 cut(s) | 188, 277 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 388, 420 |
| AspLEI | GCGC | 3 cut(s) | 166, 196, 365 |
| AspS9I | GGNCC | 3 cut(s) | 151, 219, 292 |
| AsuHPI | GGTGA | 3 cut(s) | 28, 446, 568 |
| AsuII | TTCGAA | 1 cut(s) | 228 |
| AvaI | CYCGRG | 1 cut(s) | 173 |
| AvaII | GGWCC | 3 cut(s) | 151, 219, 292 |
| BanII | GRGCYC | 1 cut(s) | 603 |
| BauI | CACGAG | 1 cut(s) | 212 |
| BbsI | GAAGAC | 2 cut(s) | 87, 255 |
| BccI | CCATC | 2 cut(s) | 539, 644 |
| BceAI | ACGGC | 4 cut(s) | 143, 331, 343, 376 |
| BciT130I | CCWGG | 1 cut(s) | 155 |
| BcoDI | GTCTC | 2 cut(s) | 50, 389 |
| BfaI | CTAG | 2 cut(s) | 17, 498 |
| BisI | GCNGC | 1 cut(s) | 119 |
| BlsI | GCNGC | 1 cut(s) | 120 |
| Bme1390I | CCNGG | 1 cut(s) | 155 |
| Bme18I | GGWCC | 3 cut(s) | 151, 219, 292 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 364 |
| BmeT110I | CYCGRG | 1 cut(s) | 173 |
| BmgT120I | GGNCC | 3 cut(s) | 151, 219, 292 |
| BmiI | GGNNCC | 1 cut(s) | 221 |
| BmrFI | CCNGG | 1 cut(s) | 155 |
| BmsI | GCATC | 1 cut(s) | 693 |
| BpiI | GAAGAC | 2 cut(s) | 87, 255 |
| BpmI | CTGGAG | 1 cut(s) | 554 |
| Bpu14I | TTCGAA | 1 cut(s) | 228 |
| BpuEI | CTTGAG | 1 cut(s) | 602 |
| BsaAI | YACGTR | 1 cut(s) | 673 |
| BsaHI | GRCGYC | 2 cut(s) | 6, 180 |
| BsaWI | WCCGGW | 1 cut(s) | 304 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 386, 416 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 55, 353 |
| Bse3DI | GCAATG | 1 cut(s) | 571 |
| BseBI | CCWGG | 1 cut(s) | 155 |
| BseGI | GGATG | 1 cut(s) | 123 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 55, 353 |
| BseMI | GCAATG | 1 cut(s) | 571 |
| BseMII | CTCAG | 1 cut(s) | 390 |
| BseRI | GAGGAG | 1 cut(s) | 96 |
| BseYI | CCCAGC | 2 cut(s) | 470, 476 |
| Bsh1236I | CGCG | 3 cut(s) | 164, 194, 365 |
| Bsh1285I | CGRYCG | 1 cut(s) | 259 |
| BshFI | GGCC | 1 cut(s) | 158 |
| BsiEI | CGRYCG | 1 cut(s) | 259 |
| BsiHKCI | CYCGRG | 1 cut(s) | 173 |
| BsiSI | CCGG | 1 cut(s) | 305 |
| BslFI | GGGAC | 1 cut(s) | 205 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 55, 353 |
| BsmAI | GTCTC | 2 cut(s) | 50, 389 |
| BsmFI | GGGAC | 1 cut(s) | 205 |
| BsnI | GGCC | 1 cut(s) | 158 |
| BsoBI | CYCGRG | 1 cut(s) | 173 |
| Bsp119I | TTCGAA | 1 cut(s) | 228 |
| Bsp1286I | GDGCHC | 1 cut(s) | 603 |
| Bsp143I | GATC | 1 cut(s) | 271 |
| BspACI | CCGC | 7 cut(s) | 69, 110, 116, 119, 217, 295, 389 |
| BspANI | GGCC | 1 cut(s) | 158 |
| BspCNI | CTCAG | 1 cut(s) | 391 |
| BspFNI | CGCG | 3 cut(s) | 164, 194, 365 |
| BspLI | GGNNCC | 1 cut(s) | 221 |
| BspT104I | TTCGAA | 1 cut(s) | 228 |
| BsrBI | CCGCTC | 2 cut(s) | 121, 217 |
| BsrDI | GCAATG | 1 cut(s) | 571 |
| BssMI | GATC | 1 cut(s) | 271 |
| BssNI | GRCGYC | 2 cut(s) | 6, 180 |
| BssSI | CACGAG | 1 cut(s) | 212 |
| Bst2BI | CACGAG | 1 cut(s) | 212 |
| Bst2UI | CCWGG | 1 cut(s) | 155 |
| Bst4CI | ACNGT | 2 cut(s) | 260, 353 |
| Bst6I | CTCTTC | 2 cut(s) | 230, 432 |
| BstACI | GRCGYC | 2 cut(s) | 6, 180 |
| BstBAI | YACGTR | 1 cut(s) | 673 |
| BstBI | TTCGAA | 1 cut(s) | 228 |
| BstDEI | CTNAG | 1 cut(s) | 399 |
| BstF5I | GGATG | 1 cut(s) | 123 |
| BstFNI | CGCG | 3 cut(s) | 164, 194, 365 |
| BstHHI | GCGC | 3 cut(s) | 166, 196, 365 |
| BstKTI | GATC | 1 cut(s) | 274 |
| BstMAI | GTCTC | 2 cut(s) | 50, 389 |
| BstMBI | GATC | 1 cut(s) | 271 |
| BstMCI | CGRYCG | 1 cut(s) | 259 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 68, 118, 327, 482 |
| BstNI | CCWGG | 1 cut(s) | 155 |
| BstNSI | RCATGY | 1 cut(s) | 661 |
| BstSCI | CCNGG | 1 cut(s) | 153 |
| BstUI | CGCG | 3 cut(s) | 164, 194, 365 |
| BstV2I | GAAGAC | 2 cut(s) | 87, 255 |
| BsuRI | GGCC | 1 cut(s) | 158 |
| BtsCI | GGATG | 1 cut(s) | 123 |
| CfoI | GCGC | 3 cut(s) | 166, 196, 365 |
| Cfr13I | GGNCC | 3 cut(s) | 151, 219, 292 |
| CseI | GACGC | 2 cut(s) | 14, 354 |
| Csp6I | GTAC | 3 cut(s) | 302, 325, 349 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 444, 479 |
| CviAII | CATG | 3 cut(s) | 64, 169, 658 |
| CviQI | GTAC | 3 cut(s) | 302, 325, 349 |
| DdeI | CTNAG | 1 cut(s) | 399 |
| DpnI | GATC | 1 cut(s) | 273 |
| DpnII | GATC | 1 cut(s) | 271 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 158 |
| DriI | GACNNNNNGTC | 1 cut(s) | 364 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 158 |
| EaeI | YGGCCR | 1 cut(s) | 156 |
| Eam1104I | CTCTTC | 2 cut(s) | 230, 432 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 364 |
| EarI | CTCTTC | 2 cut(s) | 230, 432 |
| EciI | GGCGGA | 2 cut(s) | 99, 105 |
| Eco24I | GRGCYC | 1 cut(s) | 603 |
| Eco47I | GGWCC | 3 cut(s) | 151, 219, 292 |
| Eco57I | CTGAAG | 1 cut(s) | 25 |
| Eco88I | CYCGRG | 1 cut(s) | 173 |
| EcoRII | CCWGG | 1 cut(s) | 153 |
| EcoT38I | GRGCYC | 1 cut(s) | 603 |
| FaeI | CATG | 3 cut(s) | 67, 172, 661 |
| FaiI | YATR | 3 cut(s) | 65, 170, 659 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 680, 712 |
| FaqI | GGGAC | 1 cut(s) | 205 |
| FatI | CATG | 3 cut(s) | 63, 168, 657 |
| Fnu4HI | GCNGC | 1 cut(s) | 119 |
| FokI | GGATG | 1 cut(s) | 110 |
| FriOI | GRGCYC | 1 cut(s) | 603 |
| Fsp4HI | GCNGC | 1 cut(s) | 119 |
| FspBI | CTAG | 2 cut(s) | 17, 498 |
| GlaI | GCGC | 3 cut(s) | 165, 195, 364 |
| GluI | GCNGC | 1 cut(s) | 119 |
| GsaI | CCCAGC | 2 cut(s) | 474, 480 |
| GsuI | CTGGAG | 1 cut(s) | 554 |
| HaeIII | GGCC | 1 cut(s) | 158 |
| HapII | CCGG | 1 cut(s) | 305 |
| HgaI | GACGC | 2 cut(s) | 14, 354 |
| HhaI | GCGC | 3 cut(s) | 166, 196, 365 |
| Hin1I | GRCGYC | 2 cut(s) | 6, 180 |
| Hin1II | CATG | 3 cut(s) | 67, 172, 661 |
| Hin6I | GCGC | 3 cut(s) | 164, 194, 363 |
| HinP1I | GCGC | 3 cut(s) | 164, 194, 363 |
| HinfI | GANTC | 4 cut(s) | 20, 265, 452, 529 |
| HpaII | CCGG | 1 cut(s) | 305 |
| HphI | GGTGA | 3 cut(s) | 28, 446, 568 |
| Hpy188I | TCNGA | 4 cut(s) | 25, 264, 276, 510 |
| Hpy188III | TCNNGA | 4 cut(s) | 184, 269, 533, 620 |
| HpyAV | CCTTC | 4 cut(s) | 49, 232, 238, 590 |
| HpyCH4III | ACNGT | 2 cut(s) | 260, 353 |
| HpyCH4IV | ACGT | 5 cut(s) | 144, 180, 300, 638, 672 |
| HpyCH4V | TGCA | 2 cut(s) | 55, 420 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 68, 118, 327, 482 |
| HpyF3I | CTNAG | 1 cut(s) | 399 |
| HpySE526I | ACGT | 5 cut(s) | 144, 180, 300, 638, 672 |
| Hsp92I | GRCGYC | 2 cut(s) | 6, 180 |
| Hsp92II | CATG | 3 cut(s) | 67, 172, 661 |
| HspAI | GCGC | 3 cut(s) | 164, 194, 363 |
| Kzo9I | GATC | 1 cut(s) | 271 |
| LmnI | GCTCC | 2 cut(s) | 318, 577 |
| LweI | GCATC | 1 cut(s) | 693 |
| MaeI | CTAG | 2 cut(s) | 17, 498 |
| MaeII | ACGT | 5 cut(s) | 144, 180, 300, 638, 672 |
| MaeIII | GTNAC | 2 cut(s) | 491, 634 |
| MalI | GATC | 1 cut(s) | 273 |
| MbiI | CCGCTC | 2 cut(s) | 121, 217 |
| MboI | GATC | 1 cut(s) | 271 |
| MboII | GAAGA | 5 cut(s) | 87, 217, 260, 449, 538 |
| MhlI | GDGCHC | 1 cut(s) | 603 |
| MluCI | AATT | 2 cut(s) | 188, 277 |
| MlyI | GAGTC | 1 cut(s) | 14 |
| MmeI | TCCRAC | 2 cut(s) | 48, 242 |
| MspI | CCGG | 1 cut(s) | 305 |
| MspR9I | CCNGG | 1 cut(s) | 155 |
| MvaI | CCWGG | 1 cut(s) | 155 |
| MvnI | CGCG | 3 cut(s) | 164, 194, 365 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 68, 118, 327, 482 |
| NdeII | GATC | 1 cut(s) | 271 |
| NlaIII | CATG | 3 cut(s) | 67, 172, 661 |
| NlaIV | GGNNCC | 1 cut(s) | 221 |
| NmuCI | GTSAC | 2 cut(s) | 491, 634 |
| NspI | RCATGY | 1 cut(s) | 661 |
| NspV | TTCGAA | 1 cut(s) | 228 |
| PaeR7I | CTCGAG | 1 cut(s) | 173 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 135, 138, 374, 377 |
| PfeI | GAWTC | 3 cut(s) | 265, 452, 529 |
| PflFI | GACNNNGTC | 1 cut(s) | 290 |
| PkrI | GCNGC | 1 cut(s) | 120 |
| PleI | GAGTC | 1 cut(s) | 14 |
| PpsI | GAGTC | 1 cut(s) | 14 |
| Ppu21I | YACGTR | 1 cut(s) | 673 |
| Psp6I | CCWGG | 1 cut(s) | 153 |
| PspFI | CCCAGC | 2 cut(s) | 470, 476 |
| PspGI | CCWGG | 1 cut(s) | 153 |
| PspN4I | GGNNCC | 1 cut(s) | 221 |
| PspPI | GGNCC | 3 cut(s) | 151, 219, 292 |
| PspXI | VCTCGAGB | 1 cut(s) | 173 |
| PsyI | GACNNNGTC | 1 cut(s) | 290 |
| RsaI | GTAC | 3 cut(s) | 303, 326, 350 |
| RsaNI | GTAC | 3 cut(s) | 302, 325, 349 |
| SatI | GCNGC | 1 cut(s) | 119 |
| Sau3AI | GATC | 1 cut(s) | 271 |
| Sau96I | GGNCC | 3 cut(s) | 151, 219, 292 |
| SchI | GAGTC | 1 cut(s) | 14 |
| ScrFI | CCNGG | 1 cut(s) | 155 |
| SduI | GDGCHC | 1 cut(s) | 603 |
| SfaNI | GCATC | 1 cut(s) | 693 |
| Sfr274I | CTCGAG | 1 cut(s) | 173 |
| SfuI | TTCGAA | 1 cut(s) | 228 |
| SinI | GGWCC | 3 cut(s) | 151, 219, 292 |
| SlaI | CTCGAG | 1 cut(s) | 173 |
| SmlI | CTYRAG | 2 cut(s) | 173, 581 |
| SmoI | CTYRAG | 2 cut(s) | 173, 581 |
| Sse9I | AATT | 2 cut(s) | 188, 277 |
| SsiI | CCGC | 7 cut(s) | 69, 110, 116, 119, 217, 295, 389 |
| SspMI | CTAG | 2 cut(s) | 17, 498 |
| StyD4I | CCNGG | 1 cut(s) | 153 |
| TaaI | ACNGT | 2 cut(s) | 260, 353 |
| TaiI | ACGT | 5 cut(s) | 147, 183, 303, 641, 675 |
| TaqI | TCGA | 6 cut(s) | 30, 174, 228, 255, 380, 516 |
| TasI | AATT | 2 cut(s) | 188, 277 |
| TauI | GCSGC | 1 cut(s) | 121 |
| TfiI | GAWTC | 3 cut(s) | 265, 452, 529 |
| TseFI | GTSAC | 2 cut(s) | 491, 634 |
| Tsp45I | GTSAC | 2 cut(s) | 491, 634 |
| Tth111I | GACNNNGTC | 1 cut(s) | 290 |
| VpaK11BI | GGWCC | 3 cut(s) | 151, 219, 292 |
| XapI | RAATTY | 2 cut(s) | 188, 277 |
| XceI | RCATGY | 1 cut(s) | 661 |
| XhoI | CTCGAG | 1 cut(s) | 173 |
| XspI | CTAG | 2 cut(s) | 17, 498 |
| ZraI | GACGTC | 1 cut(s) | 181 |