Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

65856390 .. 65860937

Gene Structure 4548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G037420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2175 bp

ATGTGGAAGGAATCAATTCCCATAGAAATTCCATTTTGCATATTTCCCTTCGTCTCTTTGTTCTCTAGCAAACCTCTCTCTTGGTCTCGCTTTCAGTCTCCCAAAACCTCACTCTCTCTCTCTCTCGCTCTCTCTCTCATCATAGCCACCCCTGCGTACCGAGACGACCTCCACACCATTCTCTCCGAGCAACGCCGAGAGCTCATGGCCGCCAAAACCCTAGACTCCGACCTCGACATCGCCTTCAGTCTCCAAATGCAGGAAGCCATGACCGCCTCCCTCTCTCAACAGCCCTCGTCTTCGCGCCCTCCTCCGCCTCCGCCGCTCATCCACGACGAATACGACGACGTATTGGACCTCGCCGTCGCGCTCATGCTCGAGGACGTCCAGAAATTCGCGCAGGAATACGACGACCACGAGCGGTCCCTCTTCGAAATAAGGCAGGCGAAGGAAGACCTCGACCGTCGGATTCACGATCAGAATTTCGCCGACGAGGTCCGCAACGTCCCGGAGGACTATTGGAGCAAGTACGGCGATTACTACGAGAAGCCGTACTGTGGCGACGGCGCGTCTTCGTCGTCGTCGAAACCGGCGGTGGAGACTGAGTGTTTGAGATTGTATTGCAAGGGTTTGGTTGGTGAAGAGGTGGTTAGGGATTCGAAGGTGGTGGTGGCTGGGGCTGGGGTTGCGATTTGTGACCCTAGAGATAATCTGATATTCGAGGCGAGGAAGAATCTGGAGGCGTTTGATGGTGGTGTGGTGATGAGCAATGAGGCTGTGGAGCTTGAGGCTCTCCTTGAAGGGCTCAATACAGCTCTCACGCTGGACTTGAAAAATGTCACATTTTTCTGTGATGGCTACATGCTTTACCAATACGTTACAGGCAGAGTGCTTCCTGGGAACAGCAAGATTGCAACATTAGTCAATCAATTAGGAGTTCTACGAAGAAAATTTGAATATTGCAGCCCTTCTTTTGTGGCACGTAGTGACATTAAGTTTGCATTTCAATTTGCAAGAGAAGCTATAGTTTCTCAAATAACCTGGCCTGCAGAAACTAGCAGTGGCAAATCTTTGAAGGAGACTTGTGTAATTTGTTTTGAGGACACTGATGTTGGTCGAATGTTTTCAATTGATGGTTGTCTGCACAGGTATTGCTTTTCTTGTATGAAACAGCATGTAGAAGTTAAGTTGCTTAATGGGCAGGTGGCACAGTGCCCTCACGAAGGCTGTAATTCTGAGGTCAATATTGACAGTTGCGTACAATTCCTGGCACCTCAACTAGTTGAGGTTATGAGCCAAAGAATCAAGGAATCTTCTATTCCTGTCACAGAAAAAGTTTATTGCCCAAAACCCAGGTGTTCTGCATTGATGTCCAAAAAGGAGGTCTTGCAATATACAAGCAGCTTTTATGCTGGTGCTGAACAATCTGGAGCCAGGAGATGCATGAAATGTCATTCCTATTTTTGTATCAATTGCAAGGTCCCATGGCATTCGGACATGACATGCTATGATTACAAAAGATCGCATCCCTATCCCCTTGCAGAAGACCAGTTGCTGAAGTCGTTGGCTACGATGAAACACTGGCGTCAGTGTGTTAAGTGCAAGAATATGGTTGAACTCGCAGAAGGTTGTTACCACATTACTTGCAGATGTGGATATGAGTTCTGCTATACTTGCGGAGCTGAATGGAAGGACAAGAAACCAACATGTTCCTGCCCAATCTGGGATGTGCGCAACATCATTCGCGAACAGCCACGACAAGTCCAGCCCATTATACGTGAGCAACCACGCCAAGTTCCCCAACAACTGCGGCAGCCCATTATGCCACGGCAGGTGCAGCCTATCAGACTTGAACACCAACGACAAGGCCAGCCCATTAGACATGAACAACGACAAAGATTTCAAGTGCAACAGCCCATTATGCCACAACAAGTACAGCATGTCATACATGAACAGCCACGACAAGGACAGCCTGGACGTGAGCCACCTCAACAACTGCAGCCCAATATATATCAGCAGCACCGACGTGGACAGCCTGTTGTACTTGAACAGCCACGACAGGCACAGCCCATTAGACGTGAACAGCCACGACAGGTACGGCAACAACAGGATTATGACTACTATGAACAGCCACGACAGGTACGGCGACAAGATGATTACAACTACTATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

724

Amino Acids

83.55

Weight (kDa)

6.64

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	224 - 341	7e-19	Reverse transcriptase-like
IBR	PF01485	444 - 502	2.1e-10	IBR domain, a half RING-finger domain
IBR	PF01485	517 - 570	5.8e-08	IBR domain, a half RING-finger domain
IBR_1	PF22191	529 - 566	4e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1192, 1822
AasI	GACNNNNNNGTC	1 cut(s)	362
AatII	GACGTC	1 cut(s)	387
Acc16I	TGCGCA	1 cut(s)	1733
Acc36I	ACCTGC	2 cut(s)	1192, 1822
AccB1I	GGYRCC	1 cut(s)	1270
AccBSI	CCGCTC	2 cut(s)	325, 421
AccII	CGCG	5 cut(s)	304, 368, 398, 569, 1746
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	4 cut(s)	27, 392, 481, 950
AcuI	CTGAAG	2 cut(s)	229, 1577
AcyI	GRCGYC	2 cut(s)	384, 1585
AdeI	CACNNNGTG	1 cut(s)	986
AfaI	GTAC	8 cut(s)	158, 530, 554, 1260, 1935, 2043, 2097, 2142
AfiI	CCNNNNNNNGG	5 cut(s)	259, 557, 1223, 1723, 1964
AflIII	ACRYGT	1 cut(s)	1706
AhdI	GACNNNNNGTC	1 cut(s)	568
AhlI	ACTAGT	1 cut(s)	1279
AjiI	CACGTC	3 cut(s)	1979, 2027, 2078
AjnI	CCWGG	6 cut(s)	895, 1040, 1266, 1352, 1433, 1972
AleI	CACNNNNGTG	1 cut(s)	2025
AluBI	AGCT	6 cut(s)	202, 784, 815, 1022, 1404, 1682
AluI	AGCT	6 cut(s)	202, 784, 815, 1022, 1404, 1682
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	7 cut(s)	58, 90, 102, 156, 254, 593, 1073
AlwNI	CAGNNNCTG	1 cut(s)	1555
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	3 cut(s)	207, 1043, 1867
ApeKI	GCWGC	6 cut(s)	963, 1401, 1813, 1837, 1999, 2017
ApoI	RAATTY	4 cut(s)	27, 392, 481, 950
ArsI	GACNNNNNNTTYG	6 cut(s)	592, 624, 980, 1012, 1368, 1400
Asp700I	GAANNNNTTC	2 cut(s)	15, 1123
AspLEI	GCGC	5 cut(s)	306, 370, 400, 569, 1734
AspS9I	GGNCC	4 cut(s)	355, 423, 496, 1480
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	650, 772
AsuII	TTCGAA	2 cut(s)	432, 659
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	4 cut(s)	355, 423, 496, 1480
BaeGI	GKGCMC	1 cut(s)	1217
BanI	GGYRCC	1 cut(s)	1270
BanII	GRGCYC	2 cut(s)	204, 807
BauI	CACGAG	1 cut(s)	416
BbsI	GAAGAC	4 cut(s)	291, 459, 564, 1551
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	6 cut(s)	975, 1413, 1825, 1849, 2011, 2029
BccI	CCATC	3 cut(s)	743, 848, 1127
BceAI	ACGGC	7 cut(s)	347, 535, 547, 580, 1844, 2114, 2159
BciT130I	CCWGG	6 cut(s)	897, 1042, 1268, 1354, 1435, 1974
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	7 cut(s)	58, 90, 102, 156, 254, 593, 1073
BcuI	ACTAGT	1 cut(s)	1279
BfaI	CTAG	6 cut(s)	66, 221, 702, 1056, 1280, 2173
BfmI	CTRYAG	3 cut(s)	1023, 1047, 1997
BfuAI	ACCTGC	2 cut(s)	1192, 1822
BisI	GCNGC	9 cut(s)	210, 323, 964, 1402, 1811, 1814, 1838, 2000, 2018
BlsI	GCNGC	9 cut(s)	211, 324, 965, 1403, 1812, 1815, 1839, 2001, 2019
Bme1390I	CCNGG	7 cut(s)	509, 897, 1042, 1268, 1354, 1435, 1974
Bme18I	GGWCC	4 cut(s)	355, 423, 496, 1480
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmeT110I	CYCGRG	1 cut(s)	377
BmgBI	CACGTC	3 cut(s)	1979, 2027, 2078
BmgT120I	GGNCC	4 cut(s)	355, 423, 496, 1480
BmiI	GGNNCC	4 cut(s)	425, 1272, 1432, 1482
BmrFI	CCNGG	7 cut(s)	509, 897, 1042, 1268, 1354, 1435, 1974
BmsI	GCATC	2 cut(s)	1430, 1534
BpiI	GAAGAC	4 cut(s)	291, 459, 564, 1551
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BpmI	CTGGAG	2 cut(s)	758, 1449
Bpu14I	TTCGAA	2 cut(s)	432, 659
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	509
BsaAI	YACGTR	2 cut(s)	983, 1778
BsaHI	GRCGYC	2 cut(s)	384, 1585
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	4 cut(s)	896, 1352, 1484, 1826
BsaXI	ACNNNNNCTCC	2 cut(s)	590, 620
Bsc4I	CCNNNNNNNGG	5 cut(s)	259, 557, 1223, 1723, 1964
Bse118I	RCCGGY	1 cut(s)	589
Bse1I	ACTGG	2 cut(s)	1549, 1586
Bse3DI	GCAATG	1 cut(s)	775
BseBI	CCWGG	6 cut(s)	897, 1042, 1268, 1354, 1435, 1974
BseDI	CCNNGG	4 cut(s)	896, 1352, 1484, 1826
BseGI	GGATG	3 cut(s)	327, 1525, 1732
BseLI	CCNNNNNNNGG	5 cut(s)	259, 557, 1223, 1723, 1964
BseMI	GCAATG	1 cut(s)	775
BseMII	CTCAG	2 cut(s)	594, 1227
BseNI	ACTGG	2 cut(s)	1549, 1586
BseRI	GAGGAG	1 cut(s)	300
BseSI	GKGCMC	1 cut(s)	1217
BseXI	GCAGC	6 cut(s)	975, 1413, 1825, 1849, 2011, 2029
BseYI	CCCAGC	2 cut(s)	674, 680
BsgI	GTGCAG	2 cut(s)	1127, 1856
Bsh1236I	CGCG	5 cut(s)	304, 368, 398, 569, 1746
Bsh1285I	CGRYCG	1 cut(s)	463
BshFI	GGCC	3 cut(s)	209, 1045, 1869
BshNI	GGYRCC	1 cut(s)	1270
BsiEI	CGRYCG	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	2 cut(s)	509, 590
BslFI	GGGAC	3 cut(s)	409, 491, 1466
BslI	CCNNNNNNNGG	5 cut(s)	259, 557, 1223, 1723, 1964
BsmAI	GTCTC	7 cut(s)	58, 90, 102, 156, 254, 593, 1073
BsmBI	CGTCTC	2 cut(s)	58, 156
BsmFI	GGGAC	3 cut(s)	409, 491, 1466
BsmI	GAATGC	1 cut(s)	1489
BsnI	GGCC	3 cut(s)	209, 1045, 1869
Bso31I	GGTCTC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	377
Bsp119I	TTCGAA	2 cut(s)	432, 659
Bsp1286I	GDGCHC	3 cut(s)	204, 807, 1217
Bsp143I	GATC	2 cut(s)	475, 1520
Bsp19I	CCATGG	1 cut(s)	1484
Bsp68I	TCGCGA	1 cut(s)	1746
BspANI	GGCC	3 cut(s)	209, 1045, 1869
BspCNI	CTCAG	2 cut(s)	595, 1228
BspFNI	CGCG	5 cut(s)	304, 368, 398, 569, 1746
BspLI	GGNNCC	4 cut(s)	425, 1272, 1432, 1482
BspMAI	CTGCAG	2 cut(s)	1051, 2001
BspMI	ACCTGC	2 cut(s)	1192, 1822
BspT104I	TTCGAA	2 cut(s)	432, 659
BspT107I	GGYRCC	1 cut(s)	1270
BspTNI	GGTCTC	1 cut(s)	90
BsrBI	CCGCTC	2 cut(s)	325, 421
BsrDI	GCAATG	1 cut(s)	775
BsrFI	RCCGGY	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	1549, 1586
BssAI	RCCGGY	1 cut(s)	589
BssECI	CCNNGG	4 cut(s)	896, 1352, 1484, 1826
BssMI	GATC	2 cut(s)	475, 1520
BssNI	GRCGYC	2 cut(s)	384, 1585
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	1484
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	6 cut(s)	897, 1042, 1268, 1354, 1435, 1974
Bst4CI	ACNGT	4 cut(s)	464, 557, 1212, 1253
Bst6I	CTCTTC	2 cut(s)	434, 636
BstACI	GRCGYC	2 cut(s)	384, 1585
BstBAI	YACGTR	2 cut(s)	983, 1778
BstBI	TTCGAA	2 cut(s)	432, 659
BstC8I	GCNNGC	3 cut(s)	444, 1047, 1871
BstDEI	CTNAG	2 cut(s)	603, 1236
BstDSI	CCRYGG	2 cut(s)	1484, 1826
BstENI	CCTNNNNNAGG	1 cut(s)	1221
BstF5I	GGATG	3 cut(s)	327, 1525, 1732
BstFNI	CGCG	5 cut(s)	304, 368, 398, 569, 1746
BstHHI	GCGC	5 cut(s)	306, 370, 400, 569, 1734
BstKTI	GATC	2 cut(s)	478, 1523
BstMAI	GTCTC	7 cut(s)	58, 90, 102, 156, 254, 593, 1073
BstMBI	GATC	2 cut(s)	475, 1520
BstMCI	CGRYCG	1 cut(s)	463
BstNI	CCWGG	6 cut(s)	897, 1042, 1268, 1354, 1435, 1974
BstNSI	RCATGY	5 cut(s)	865, 1178, 1506, 1710, 1943
BstSCI	CCNGG	7 cut(s)	507, 895, 1040, 1266, 1352, 1433, 1972
BstSFI	CTRYAG	3 cut(s)	1023, 1047, 1997
BstSLI	GKGCMC	1 cut(s)	1217
BstUI	CGCG	5 cut(s)	304, 368, 398, 569, 1746
BstV1I	GCAGC	6 cut(s)	975, 1413, 1825, 1849, 2011, 2029
BstV2I	GAAGAC	4 cut(s)	291, 459, 564, 1551
BsuRI	GGCC	3 cut(s)	209, 1045, 1869
BtgI	CCRYGG	2 cut(s)	1484, 1826
BtgZI	GCGATG	1 cut(s)	223
BtrI	CACGTC	3 cut(s)	1979, 2027, 2078
BtsCI	GGATG	3 cut(s)	327, 1525, 1732
BtsI	GCAGTG	1 cut(s)	1066
BtsIMutI	CAGTG	5 cut(s)	1066, 1104, 1217, 1579, 1595
BtuMI	TCGCGA	1 cut(s)	1746
BveI	ACCTGC	2 cut(s)	1192, 1822
Cac8I	GCNNGC	3 cut(s)	444, 1047, 1871
CaiI	CAGNNNCTG	1 cut(s)	1555
CfoI	GCGC	5 cut(s)	306, 370, 400, 569, 1734
Cfr10I	RCCGGY	1 cut(s)	589
Cfr13I	GGNCC	4 cut(s)	355, 423, 496, 1480
CseI	GACGC	2 cut(s)	558, 1574
Csp6I	GTAC	8 cut(s)	157, 529, 553, 1259, 1934, 2042, 2096, 2141
CspCI	CAANNNNNGTGG	2 cut(s)	1625, 1660
CviQI	GTAC	8 cut(s)	157, 529, 553, 1259, 1934, 2042, 2096, 2141
DdeI	CTNAG	2 cut(s)	603, 1236
DpnI	GATC	2 cut(s)	477, 1522
DpnII	GATC	2 cut(s)	475, 1520
DraIII	CACNNNGTG	1 cut(s)	986
DrdI	GACNNNNNNGTC	1 cut(s)	362
DriI	GACNNNNNGTC	1 cut(s)	568
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	434, 636
Eam1105I	GACNNNNNGTC	1 cut(s)	568
EarI	CTCTTC	2 cut(s)	434, 636
EciI	GGCGGA	2 cut(s)	303, 309
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	1484
Eco24I	GRGCYC	2 cut(s)	204, 807
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	4 cut(s)	355, 423, 496, 1480
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	2 cut(s)	229, 1577
Eco88I	CYCGRG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	1221
EcoO109I	RGGNCCY	1 cut(s)	1480
EcoRII	CCWGG	6 cut(s)	895, 1040, 1266, 1352, 1433, 1972
EcoT14I	CCWWGG	1 cut(s)	1484
EcoT22I	ATGCAT	1 cut(s)	1445
EcoT38I	GRGCYC	2 cut(s)	204, 807
ErhI	CCWWGG	1 cut(s)	1484
Esp3I	CGTCTC	2 cut(s)	58, 156
FalI	AAGNNNNNCTT	2 cut(s)	1370, 1402
FaqI	GGGAC	3 cut(s)	409, 491, 1466
Fnu4HI	GCNGC	9 cut(s)	210, 323, 964, 1402, 1811, 1814, 1838, 2000, 2018
FokI	GGATG	3 cut(s)	314, 1512, 1739
FriOI	GRGCYC	2 cut(s)	204, 807
Fsp4HI	GCNGC	9 cut(s)	210, 323, 964, 1402, 1811, 1814, 1838, 2000, 2018
FspBI	CTAG	6 cut(s)	66, 221, 702, 1056, 1280, 2173
FspI	TGCGCA	1 cut(s)	1733
GlaI	GCGC	5 cut(s)	305, 369, 399, 568, 1733
GluI	GCNGC	9 cut(s)	210, 323, 964, 1402, 1811, 1814, 1838, 2000, 2018
GsaI	CCCAGC	2 cut(s)	678, 684
GsuI	CTGGAG	2 cut(s)	758, 1449
HaeIII	GGCC	3 cut(s)	209, 1045, 1869
HapII	CCGG	2 cut(s)	509, 590
HgaI	GACGC	2 cut(s)	558, 1574
HhaI	GCGC	5 cut(s)	306, 370, 400, 569, 1734
Hin1I	GRCGYC	2 cut(s)	384, 1585
Hin6I	GCGC	5 cut(s)	304, 368, 398, 567, 1732
HinP1I	GCGC	5 cut(s)	304, 368, 398, 567, 1732
HinfI	GANTC	7 cut(s)	11, 224, 469, 656, 733, 1302, 1310
HpaII	CCGG	2 cut(s)	509, 590
HphI	GGTGA	2 cut(s)	650, 772
Hpy166II	GTNNAC	2 cut(s)	2030, 2081
Hpy188I	TCNGA	8 cut(s)	187, 229, 468, 480, 714, 1237, 1495, 1847
Hpy188III	TCNNGA	6 cut(s)	388, 473, 737, 1220, 1428, 1745
Hpy8I	GTNNAC	2 cut(s)	2030, 2081
HpyCH4III	ACNGT	4 cut(s)	464, 557, 1212, 1253
HpyCH4IV	ACGT	9 cut(s)	348, 384, 504, 876, 982, 1777, 1978, 2026, 2077
HpyF3I	CTNAG	2 cut(s)	603, 1236
HpySE526I	ACGT	9 cut(s)	348, 384, 504, 876, 982, 1777, 1978, 2026, 2077
Hsp92I	GRCGYC	2 cut(s)	384, 1585
HspAI	GCGC	5 cut(s)	304, 368, 398, 567, 1732
Kzo9I	GATC	2 cut(s)	475, 1520
LmnI	GCTCC	4 cut(s)	522, 781, 1430, 1679
Lsp1109I	GCAGC	6 cut(s)	975, 1413, 1825, 1849, 2011, 2029
LweI	GCATC	2 cut(s)	1430, 1534
MaeI	CTAG	6 cut(s)	66, 221, 702, 1056, 1280, 2173
MaeII	ACGT	9 cut(s)	348, 384, 504, 876, 982, 1777, 1978, 2026, 2077
MaeIII	GTNAC	6 cut(s)	695, 838, 877, 986, 1324, 1631
MalI	GATC	2 cut(s)	477, 1522
MbiI	CCGCTC	2 cut(s)	325, 421
MboI	GATC	2 cut(s)	475, 1520
MboII	GAAGA	9 cut(s)	291, 421, 464, 564, 653, 742, 957, 1305, 1556
MfeI	CAATTG	2 cut(s)	1128, 1471
MhlI	GDGCHC	3 cut(s)	204, 807, 1217
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	2 cut(s)	252, 446
Mph1103I	ATGCAT	1 cut(s)	1445
MroXI	GAANNNNTTC	2 cut(s)	15, 1123
MseI	TTAA	4 cut(s)	993, 1185, 1194, 1596
MslI	CAYNNNNRTG	1 cut(s)	2025
MspI	CCGG	2 cut(s)	509, 590
MspR9I	CCNGG	7 cut(s)	509, 897, 1042, 1268, 1354, 1435, 1974
MunI	CAATTG	2 cut(s)	1128, 1471
Mva1269I	GAATGC	1 cut(s)	1489
MvaI	CCWGG	6 cut(s)	897, 1042, 1268, 1354, 1435, 1974
MvnI	CGCG	5 cut(s)	304, 368, 398, 569, 1746
NciI	CCSGG	1 cut(s)	509
NcoI	CCATGG	1 cut(s)	1484
NdeII	GATC	2 cut(s)	475, 1520
NlaIV	GGNNCC	4 cut(s)	425, 1272, 1432, 1482
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	4 cut(s)	695, 838, 986, 1324
NruI	TCGCGA	1 cut(s)	1746
NsbI	TGCGCA	1 cut(s)	1733
NsiI	ATGCAT	1 cut(s)	1445
NspI	RCATGY	5 cut(s)	865, 1178, 1506, 1710, 1943
NspV	TTCGAA	2 cut(s)	432, 659
OliI	CACNNNNGTG	1 cut(s)	2025
PaeR7I	CTCGAG	1 cut(s)	377
PaqCI	CACCTGC	2 cut(s)	1192, 1822
PciI	ACATGT	1 cut(s)	1706
PcsI	WCGNNNNNNNCGW	5 cut(s)	339, 342, 414, 581, 1568
PctI	GAATGC	1 cut(s)	1489
PdmI	GAANNNNTTC	2 cut(s)	15, 1123
PfeI	GAWTC	6 cut(s)	11, 469, 656, 733, 1302, 1310
PflFI	GACNNNGTC	1 cut(s)	494
PfoI	TCCNGGA	1 cut(s)	507
PkrI	GCNGC	9 cut(s)	211, 324, 965, 1403, 1812, 1815, 1839, 2001, 2019
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Ppu21I	YACGTR	2 cut(s)	983, 1778
PpuMI	RGGWCCY	1 cut(s)	1480
PscI	ACATGT	1 cut(s)	1706
Psp124BI	GAGCTC	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	1480
Psp6I	CCWGG	6 cut(s)	895, 1040, 1266, 1352, 1433, 1972
PspFI	CCCAGC	2 cut(s)	674, 680
PspGI	CCWGG	6 cut(s)	895, 1040, 1266, 1352, 1433, 1972
PspN4I	GGNNCC	4 cut(s)	425, 1272, 1432, 1482
PspPI	GGNCC	4 cut(s)	355, 423, 496, 1480
PspPPI	RGGWCCY	1 cut(s)	1480
PspXI	VCTCGAGB	1 cut(s)	377
PstI	CTGCAG	2 cut(s)	1051, 2001
PstNI	CAGNNNCTG	1 cut(s)	1555
PsyI	GACNNNGTC	1 cut(s)	494
RruI	TCGCGA	1 cut(s)	1746
RsaI	GTAC	8 cut(s)	158, 530, 554, 1260, 1935, 2043, 2097, 2142
RsaNI	GTAC	8 cut(s)	157, 529, 553, 1259, 1934, 2042, 2096, 2141
RseI	CAYNNNNRTG	1 cut(s)	2025
SacI	GAGCTC	1 cut(s)	204
SaqAI	TTAA	4 cut(s)	993, 1185, 1194, 1596
SatI	GCNGC	9 cut(s)	210, 323, 964, 1402, 1811, 1814, 1838, 2000, 2018
Sau3AI	GATC	2 cut(s)	475, 1520
Sau96I	GGNCC	4 cut(s)	355, 423, 496, 1480
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	7 cut(s)	509, 897, 1042, 1268, 1354, 1435, 1974
SduI	GDGCHC	3 cut(s)	204, 807, 1217
SfaNI	GCATC	2 cut(s)	1430, 1534
SfcI	CTRYAG	3 cut(s)	1023, 1047, 1997
Sfr274I	CTCGAG	1 cut(s)	377
SfuI	TTCGAA	2 cut(s)	432, 659
SinI	GGWCC	4 cut(s)	355, 423, 496, 1480
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	2025
SmlI	CTYRAG	2 cut(s)	377, 785
SmoI	CTYRAG	2 cut(s)	377, 785
SpeI	ACTAGT	1 cut(s)	1279
SspI	AATATT	2 cut(s)	959, 1246
SspMI	CTAG	6 cut(s)	66, 221, 702, 1056, 1280, 2173
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	7 cut(s)	507, 895, 1040, 1266, 1352, 1433, 1972
StyI	CCWWGG	1 cut(s)	1484
TaaI	ACNGT	4 cut(s)	464, 557, 1212, 1253
TaiI	ACGT	9 cut(s)	351, 387, 507, 879, 985, 1780, 1981, 2029, 2080
TaqI	TCGA	8 cut(s)	234, 378, 432, 459, 584, 659, 720, 1117
TatI	WGTACW	2 cut(s)	1933, 2041
TauI	GCSGC	3 cut(s)	212, 325, 1813
TfiI	GAWTC	6 cut(s)	11, 469, 656, 733, 1302, 1310
Tru1I	TTAA	4 cut(s)	993, 1185, 1194, 1596
Tru9I	TTAA	4 cut(s)	993, 1185, 1194, 1596
TscAI	CASTG	5 cut(s)	1066, 1111, 1217, 1586, 1595
TseFI	GTSAC	4 cut(s)	695, 838, 986, 1324
TseI	GCWGC	6 cut(s)	963, 1401, 1813, 1837, 1999, 2017
Tsp45I	GTSAC	4 cut(s)	695, 838, 986, 1324
TspDTI	ATGAA	6 cut(s)	1181, 1460, 1589, 1899, 1965, 2139
TspRI	CASTG	5 cut(s)	1066, 1111, 1217, 1586, 1595
Tth111I	GACNNNGTC	1 cut(s)	494
VpaK11BI	GGWCC	4 cut(s)	355, 423, 496, 1480
XagI	CCTNNNNNAGG	1 cut(s)	1221
XapI	RAATTY	4 cut(s)	27, 392, 481, 950
XceI	RCATGY	5 cut(s)	865, 1178, 1506, 1710, 1943
XhoI	CTCGAG	1 cut(s)	377
XmnI	GAANNNNTTC	2 cut(s)	15, 1123
XspI	CTAG	6 cut(s)	66, 221, 702, 1056, 1280, 2173
ZraI	GACGTC	1 cut(s)	385
Zsp2I	ATGCAT	1 cut(s)	1445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.