Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

40529048 .. 40531454

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0334700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGGAGAGCTTGATTCTGGTACCAGGGCATCTCTTGCCCAACATGATCTCTCGGTTAACCTTATTAGTTTCTGTGTTGTTCTTAGCAATTCCATTAGAAGCCAACACCTACCCAAAAAAATGTGGAAATCTCAACCTCACATTGCCCTTTGAATTTGGCACTCCTGGAAAAGGAAGTGGATCTTCTATAGGTGATTACTGGTTTGACATAATACATGGCAGCACTTCCTATAGAACACCAACATCCTTCATAGGCGAAACTAGTCTTGAGGTACAGGTACAGGTTTCTTCATTTACCAAGGTACGCGTAAATAACTCCATTGTTTACGCTTATAGTAATTATAGCTGCTACACTGAAGCTGGAGCGAAGATGTTGCACGCAAGCAATCTCCATGCTGCTGCAATCAATTTGACAGATGGCGCCCAGATTATCAGAACCTCCAACACTATTACTGCAAACAAGTTCGCATTGATAGGTTATGAGTCATTTGATTTTGTAGGTTATGACCCATTAATTTCCAGCATCAACAGTACAATGATTAATCAGGAAAGAAGGGCTTGTTCTGGTATTAACTGTGGTCATTCTTTCATTCAAAGTGGCATCAAGTACTTTTCTCTGATTGAGGTAGGAAGTGTAGGAAACATTACTTTGTTAGCTATGTATTTTTGGTTTGTCATGAGACTGAGTGGTAGTGGTACACCAGTCAAGTCCAGCTTCACGCTTCCTGTGTCTATGGTAGAAAACATCAGCTATGCGAGTCGTCACACTCTACGGCCACCAGGCAGCTCCAGGTTGAAATTATTAGCTCAACACTCTCTATGGCATTCCAATTCAAAAAAGGGATTCCTTGTATCTAAGGTTCGCGAAGTTGACACACATAAAAATCTGGAAAACAACATGAAAAAGGACAGAGGTTTCATTGCACACATCAAAGTCTTTTGGGAAAATTTCACTCTAGGTCTTGGCTTTTGTTGCTTGTTTCTTGTGTTTGGGATCACTGGGATATATTCCAGTGTGAAGAAACAAAAGTCGGCTAAGCTCAAATCCGAGTTTTTCCAGAAAAATGGAGGGTTATTGTTAGAGCAGCGTATTAGTGCTTCAACCGGAGGATGCACAATCATTTTTACATCCAAGGAGATAGAAATAGCTATCGACTATCATACGAAGAGTCACATTTTTGGTCCAGGAGAGGGTGGAGTCGACCGTTTCATAAATGAGATTATCACTCTGACCCAAATCAACCATCAAAATATGGTTAAGTTCTTCGGCTGCTGTCTAGAGACTGAAGCTCCCATACTGGTCTATGAACTTGCCTCCAATGGGACCCTTTTCGACTACATTCATCATACCAATGGGAAAACATCATTGTCCTGGGATACGCTTCTAAAGATAGCCTCAGAATCTGCAGCAGGTCTTAATTATCTGCATTCTGCATCAATCATTCATGGAAATGTAAAGTCTTCCAACGTTTTACTAACTGATTGTTTCGTTGCCAAAGTTGCCGGATTTGGACCTCCGAGGTTATTTCCTACTAATGAATCCCAGATAAGCACACTGCTGCAGAGGACACTTGGCTATCTAGACCCGGAGTATCTTCATAAAGGTCAACTGACAGATAAGAGTGATGTCTACAGCTTTGGAATGGTTTTATTAGAGATTGTAACAGGAGAGAAGCCAATATCATTTGGTAGACCAGAAAGTCAGAGAATCATATCTTCCCATTTTATTTCGTCCATGGAATTACAAAGTGGTCTCTTTCATGAGATTGTTTGGCCACAAATTGTAAGAGAAGGAGACAGAGAACAAGTCAGAGCAGTAGCAGAGCTTGCAAAAAGGTGCCTCAAGCTGAGTAGTGCAGAAAGACCAACAATGGAAGAAGTGGCCGGAGAGCTAAAGAGGCTGTCTGACAGCCACCAAGTACAAGTTGGCCGCCATGACATCAAAGGTTCTTTGGAGATGAACCAGCCGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

657

Amino Acids

72.71

Weight (kDa)

8.34

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	400 - 630	1.1e-36	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	401 - 627	1.2e-31	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1698
Acc36I	ACCTGC	1 cut(s)	1400
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	3 cut(s)	19, 419, 1836
AccI	GTMKAC	3 cut(s)	1200, 1629, 1690
AccII	CGCG	2 cut(s)	306, 864
AciI	CCGC	1 cut(s)	1930
AclI	AACGTT	1 cut(s)	1467
AclWI	GGATC	2 cut(s)	187, 1001
AcoI	YGGCCR	4 cut(s)	773, 1772, 1881, 1927
AcsI	RAATTY	2 cut(s)	152, 946
AcuI	CTGAAG	2 cut(s)	375, 1305
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	8 cut(s)	21, 273, 279, 303, 532, 608, 697, 1920
AfiI	CCNNNNNNNGG	3 cut(s)	170, 1190, 1320
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	5 cut(s)	152, 593, 796, 834, 1101
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	6 cut(s)	22, 163, 778, 788, 1183, 1370
Alw26I	GTCTC	4 cut(s)	673, 1274, 1757, 1788
AlwI	GGATC	2 cut(s)	187, 1001
AlwNI	CAGNNNCTG	1 cut(s)	1403
AoxI	GGCC	4 cut(s)	773, 1772, 1881, 1927
ApeKI	GCWGC	9 cut(s)	219, 345, 395, 398, 783, 1084, 1269, 1406, 1558
ApoI	RAATTY	2 cut(s)	152, 946
AseI	ATTAAT	2 cut(s)	512, 540
Asp718I	GGTACC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	3 cut(s)	1181, 1323, 1511
AsuC2I	CCSGG	1 cut(s)	1586
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	3 cut(s)	1181, 1323, 1511
BaeI	ACNNNNGTAYC	2 cut(s)	687, 720
BalI	TGGCCA	1 cut(s)	1774
BanI	GGYRCC	3 cut(s)	19, 419, 1836
BarI	GAAGNNNNNNTAC	4 cut(s)	1081, 1113, 1278, 1310
BbsI	GAAGAC	1 cut(s)	1452
BbvI	GCAGC	9 cut(s)	231, 332, 382, 385, 795, 1096, 1256, 1418, 1545
BccI	CCATC	2 cut(s)	410, 1251
BceAI	ACGGC	1 cut(s)	788
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BciT130I	CCWGG	6 cut(s)	24, 165, 780, 790, 1185, 1372
BciVI	GTATCC	1 cut(s)	1369
BcnI	CCSGG	1 cut(s)	1586
BcoDI	GTCTC	4 cut(s)	673, 1274, 1757, 1788
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	4 cut(s)	261, 956, 1277, 1580
BfmI	CTRYAG	5 cut(s)	186, 229, 1404, 1559, 1630
BfoI	RGCGCY	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	1400
BfuI	GTATCC	1 cut(s)	1369
BlpI	GCTNAGC	1 cut(s)	1035
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	7 cut(s)	24, 165, 780, 790, 1185, 1372, 1586
Bme18I	GGWCC	3 cut(s)	1181, 1323, 1511
BmgT120I	GGNCC	3 cut(s)	1181, 1323, 1511
BmiI	GGNNCC	5 cut(s)	21, 421, 1324, 1325, 1838
BmrFI	CCNGG	7 cut(s)	24, 165, 780, 790, 1185, 1372, 1586
BmrI	ACTGGG	1 cut(s)	1008
BmsI	GCATC	5 cut(s)	37, 531, 609, 1100, 1442
BmuI	ACTGGG	1 cut(s)	1008
BpiI	GAAGAC	1 cut(s)	1452
BpmI	CTGGAG	2 cut(s)	381, 772
Bpu1102I	GCTNAGC	1 cut(s)	1035
BpuEI	CTTGAG	2 cut(s)	287, 1826
BpuMI	CCSGG	1 cut(s)	1586
BsaHI	GRCGYC	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	1757
BsaJI	CCNNGG	6 cut(s)	23, 297, 1131, 1371, 1517, 1734
BsaWI	WCCGGW	1 cut(s)	1103
BsaXI	ACNNNNNCTCC	2 cut(s)	1273, 1303
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 1190, 1320
Bse1I	ACTGG	5 cut(s)	203, 701, 1003, 1011, 1302
Bse3DI	GCAATG	2 cut(s)	140, 918
BseBI	CCWGG	6 cut(s)	24, 165, 780, 790, 1185, 1372
BseDI	CCNNGG	6 cut(s)	23, 297, 1131, 1371, 1517, 1734
BseGI	GGATG	3 cut(s)	242, 1115, 1127
BseLI	CCNNNNNNNGG	3 cut(s)	170, 1190, 1320
BseMI	GCAATG	2 cut(s)	140, 918
BseMII	CTCAG	3 cut(s)	674, 1410, 1838
BseNI	ACTGG	5 cut(s)	203, 701, 1003, 1011, 1302
BseXI	GCAGC	9 cut(s)	231, 332, 382, 385, 795, 1096, 1256, 1418, 1545
BsgI	GTGCAG	1 cut(s)	1875
Bsh1236I	CGCG	2 cut(s)	306, 864
Bsh1285I	CGRYCG	1 cut(s)	1204
BshFI	GGCC	4 cut(s)	775, 1774, 1883, 1929
BshNI	GGYRCC	3 cut(s)	19, 419, 1836
BsiEI	CGRYCG	1 cut(s)	1204
BsiSI	CCGG	5 cut(s)	1104, 1503, 1586, 1884, 1967
BslFI	GGGAC	1 cut(s)	1336
BslI	CCNNNNNNNGG	3 cut(s)	170, 1190, 1320
BsmAI	GTCTC	4 cut(s)	673, 1274, 1757, 1788
BsmFI	GGGAC	1 cut(s)	1336
BsmI	GAATGC	2 cut(s)	823, 1426
BsnI	GGCC	4 cut(s)	775, 1774, 1883, 1929
Bso31I	GGTCTC	1 cut(s)	1757
Bsp143I	GATC	3 cut(s)	45, 179, 993
Bsp1720I	GCTNAGC	1 cut(s)	1035
Bsp19I	CCATGG	1 cut(s)	1734
Bsp68I	TCGCGA	1 cut(s)	864
BspACI	CCGC	1 cut(s)	1930
BspANI	GGCC	4 cut(s)	775, 1774, 1883, 1929
BspCNI	CTCAG	3 cut(s)	675, 1409, 1839
BspFNI	CGCG	2 cut(s)	306, 864
BspHI	TCATGA	2 cut(s)	675, 1759
BspLI	GGNNCC	5 cut(s)	21, 421, 1324, 1325, 1838
BspMAI	CTGCAG	2 cut(s)	1408, 1563
BspMI	ACCTGC	1 cut(s)	1400
BspPI	GGATC	2 cut(s)	187, 1001
BspT107I	GGYRCC	3 cut(s)	19, 419, 1836
BspTNI	GGTCTC	1 cut(s)	1757
BsrDI	GCAATG	2 cut(s)	140, 918
BsrI	ACTGG	5 cut(s)	203, 701, 1003, 1011, 1302
BssECI	CCNNGG	6 cut(s)	23, 297, 1131, 1371, 1517, 1734
BssMI	GATC	3 cut(s)	45, 179, 993
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	3 cut(s)	297, 1131, 1734
Bst2UI	CCWGG	6 cut(s)	24, 165, 780, 790, 1185, 1372
Bst4CI	ACNGT	3 cut(s)	530, 575, 1205
Bst6I	CTCTTC	1 cut(s)	1160
BstACI	GRCGYC	1 cut(s)	420
BstAPI	GCANNNNNTGC	2 cut(s)	34, 1826
BstC8I	GCNNGC	3 cut(s)	378, 382, 1827
BstDEI	CTNAG	6 cut(s)	82, 683, 855, 1035, 1396, 1847
BstDSI	CCRYGG	1 cut(s)	1734
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstF5I	GGATG	3 cut(s)	242, 1115, 1127
BstFNI	CGCG	2 cut(s)	306, 864
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	3 cut(s)	48, 182, 996
BstMAI	GTCTC	4 cut(s)	673, 1274, 1757, 1788
BstMBI	GATC	3 cut(s)	45, 179, 993
BstMCI	CGRYCG	1 cut(s)	1204
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 972, 1499, 1826, 1897
BstNI	CCWGG	6 cut(s)	24, 165, 780, 790, 1185, 1372
BstSCI	CCNGG	7 cut(s)	22, 163, 778, 788, 1183, 1370, 1584
BstSFI	CTRYAG	5 cut(s)	186, 229, 1404, 1559, 1630
BstUI	CGCG	2 cut(s)	306, 864
BstV1I	GCAGC	9 cut(s)	231, 332, 382, 385, 795, 1096, 1256, 1418, 1545
BstV2I	GAAGAC	1 cut(s)	1452
BstX2I	RGATCY	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	1064
BstYI	RGATCY	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	1369
BsuRI	GGCC	4 cut(s)	775, 1774, 1883, 1929
BtgI	CCRYGG	1 cut(s)	1734
BtsCI	GGATG	3 cut(s)	242, 1115, 1127
BtsI	GCAGTG	1 cut(s)	1553
BtsIMutI	CAGTG	4 cut(s)	351, 996, 1018, 1553
BtuMI	TCGCGA	1 cut(s)	864
BveI	ACCTGC	1 cut(s)	1400
Cac8I	GCNNGC	3 cut(s)	378, 382, 1827
CaiI	CAGNNNCTG	1 cut(s)	1403
CciI	TCATGA	2 cut(s)	675, 1759
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	3 cut(s)	1181, 1323, 1511
Csp6I	GTAC	8 cut(s)	20, 272, 278, 302, 531, 607, 696, 1919
CviAII	CATG	9 cut(s)	43, 215, 392, 676, 898, 1445, 1735, 1760, 1934
CviQI	GTAC	8 cut(s)	20, 272, 278, 302, 531, 607, 696, 1919
DdeI	CTNAG	6 cut(s)	82, 683, 855, 1035, 1396, 1847
DinI	GGCGCC	1 cut(s)	421
DpnI	GATC	3 cut(s)	47, 181, 995
DpnII	GATC	3 cut(s)	45, 179, 993
DrdI	GACNNNNNNGTC	1 cut(s)	1698
DseDI	GACNNNNNNGTC	1 cut(s)	1698
EaeI	YGGCCR	4 cut(s)	773, 1772, 1881, 1927
Eam1104I	CTCTTC	1 cut(s)	1160
EarI	CTCTTC	1 cut(s)	1160
Eco130I	CCWWGG	3 cut(s)	297, 1131, 1734
Eco31I	GGTCTC	1 cut(s)	1757
Eco47I	GGWCC	3 cut(s)	1181, 1323, 1511
Eco57I	CTGAAG	2 cut(s)	375, 1305
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	1323
EcoRII	CCWGG	6 cut(s)	22, 163, 778, 788, 1183, 1370
EcoT14I	CCWWGG	3 cut(s)	297, 1131, 1734
EgeI	GGCGCC	1 cut(s)	421
EheI	GGCGCC	1 cut(s)	421
ErhI	CCWWGG	3 cut(s)	297, 1131, 1734
FaeI	CATG	9 cut(s)	46, 218, 395, 679, 901, 1448, 1738, 1763, 1937
FalI	AAGNNNNNCTT	6 cut(s)	166, 198, 541, 573, 698, 730
FaqI	GGGAC	1 cut(s)	1336
FatI	CATG	9 cut(s)	42, 214, 391, 675, 897, 1444, 1734, 1759, 1933
FblI	GTMKAC	3 cut(s)	1200, 1629, 1690
FokI	GGATG	3 cut(s)	229, 1114, 1122
FspBI	CTAG	4 cut(s)	261, 956, 1277, 1580
GlaI	GCGC	1 cut(s)	421
GsuI	CTGGAG	2 cut(s)	381, 772
HaeII	RGCGCY	1 cut(s)	423
HaeIII	GGCC	4 cut(s)	775, 1774, 1883, 1929
HapII	CCGG	5 cut(s)	1104, 1503, 1586, 1884, 1967
HhaI	GCGC	1 cut(s)	422
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	9 cut(s)	46, 218, 395, 679, 901, 1448, 1738, 1763, 1937
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HincII	GTYRAC	4 cut(s)	57, 871, 1201, 1607
HindII	GTYRAC	4 cut(s)	57, 871, 1201, 1607
HinfI	GANTC	9 cut(s)	13, 482, 757, 843, 1168, 1197, 1400, 1538, 1707
HpaI	GTTAAC	1 cut(s)	57
HpaII	CCGG	5 cut(s)	1104, 1503, 1586, 1884, 1967
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	8 cut(s)	57, 325, 698, 871, 1201, 1607, 1630, 1691
Hpy188I	TCNGA	9 cut(s)	434, 618, 1048, 1230, 1399, 1518, 1704, 1811, 1906
Hpy188III	TCNNGA	9 cut(s)	266, 545, 676, 863, 887, 1057, 1277, 1580, 1760
Hpy8I	GTNNAC	8 cut(s)	57, 325, 698, 871, 1201, 1607, 1630, 1691
HpyAV	CCTTC	3 cut(s)	256, 546, 1784
HpyCH4III	ACNGT	3 cut(s)	530, 575, 1205
HpyCH4IV	ACGT	1 cut(s)	1467
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 972, 1499, 1826, 1897
HpyF3I	CTNAG	6 cut(s)	82, 683, 855, 1035, 1396, 1847
HpySE526I	ACGT	1 cut(s)	1467
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	9 cut(s)	46, 218, 395, 679, 901, 1448, 1738, 1763, 1937
HspAI	GCGC	1 cut(s)	420
KasI	GGCGCC	1 cut(s)	419
KflI	GGGWCCC	1 cut(s)	1323
KpnI	GGTACC	1 cut(s)	23
KspAI	GTTAAC	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	45, 179, 993
LmnI	GCTCC	3 cut(s)	362, 791, 1294
Lsp1109I	GCAGC	9 cut(s)	231, 332, 382, 385, 795, 1096, 1256, 1418, 1545
LweI	GCATC	5 cut(s)	37, 531, 609, 1100, 1442
MaeI	CTAG	4 cut(s)	261, 956, 1277, 1580
MaeII	ACGT	1 cut(s)	1467
MaeIII	GTNAC	3 cut(s)	761, 1169, 1660
MalI	GATC	3 cut(s)	47, 181, 995
MboI	GATC	3 cut(s)	45, 179, 993
MflI	RGATCY	1 cut(s)	179
MlsI	TGGCCA	1 cut(s)	1774
MluI	ACGCGT	1 cut(s)	304
MluNI	TGGCCA	1 cut(s)	1774
Mly113I	GGCGCC	1 cut(s)	420
MlyI	GAGTC	4 cut(s)	491, 766, 1177, 1206
MmeI	TCCRAC	2 cut(s)	465, 1488
Mox20I	TGGCCA	1 cut(s)	1774
MscI	TGGCCA	1 cut(s)	1774
MseI	TTAA	6 cut(s)	56, 512, 540, 570, 1257, 1416
MslI	CAYNNNNRTG	2 cut(s)	1350, 1449
Msp20I	TGGCCA	1 cut(s)	1774
MspI	CCGG	5 cut(s)	1104, 1503, 1586, 1884, 1967
MspR9I	CCNGG	7 cut(s)	24, 165, 780, 790, 1185, 1372, 1586
Mva1269I	GAATGC	2 cut(s)	823, 1426
MvaI	CCWGG	6 cut(s)	24, 165, 780, 790, 1185, 1372
MvnI	CGCG	2 cut(s)	306, 864
MwoI	GCNNNNNNNGC	5 cut(s)	34, 972, 1499, 1826, 1897
NarI	GGCGCC	1 cut(s)	420
NciI	CCSGG	1 cut(s)	1586
NcoI	CCATGG	1 cut(s)	1734
NdeII	GATC	3 cut(s)	45, 179, 993
NlaIII	CATG	9 cut(s)	46, 218, 395, 679, 901, 1448, 1738, 1763, 1937
NlaIV	GGNNCC	5 cut(s)	21, 421, 1324, 1325, 1838
NmuCI	GTSAC	2 cut(s)	761, 1169
NruI	TCGCGA	1 cut(s)	864
PagI	TCATGA	2 cut(s)	675, 1759
PctI	GAATGC	2 cut(s)	823, 1426
PfeI	GAWTC	5 cut(s)	13, 843, 1400, 1538, 1707
PfoI	TCCNGGA	2 cut(s)	163, 1183
PleI	GAGTC	4 cut(s)	490, 765, 1176, 1205
PluTI	GGCGCC	1 cut(s)	423
PpsI	GAGTC	4 cut(s)	490, 765, 1176, 1205
PpuMI	RGGWCCY	1 cut(s)	1323
PshBI	ATTAAT	2 cut(s)	512, 540
Psp1406I	AACGTT	1 cut(s)	1467
Psp5II	RGGWCCY	1 cut(s)	1323
Psp6I	CCWGG	6 cut(s)	22, 163, 778, 788, 1183, 1370
PspGI	CCWGG	6 cut(s)	22, 163, 778, 788, 1183, 1370
PspN4I	GGNNCC	5 cut(s)	21, 421, 1324, 1325, 1838
PspPI	GGNCC	3 cut(s)	1181, 1323, 1511
PspPPI	RGGWCCY	1 cut(s)	1323
PsrI	GAACNNNNNNTAC	2 cut(s)	843, 875
PstI	CTGCAG	2 cut(s)	1408, 1563
PstNI	CAGNNNCTG	1 cut(s)	1403
PsuI	RGATCY	1 cut(s)	179
RruI	TCGCGA	1 cut(s)	864
RsaI	GTAC	8 cut(s)	21, 273, 279, 303, 532, 608, 697, 1920
RsaNI	GTAC	8 cut(s)	20, 272, 278, 302, 531, 607, 696, 1919
RseI	CAYNNNNRTG	2 cut(s)	1350, 1449
SalI	GTCGAC	1 cut(s)	1199
SaqAI	TTAA	6 cut(s)	56, 512, 540, 570, 1257, 1416
Sau3AI	GATC	3 cut(s)	45, 179, 993
Sau96I	GGNCC	3 cut(s)	1181, 1323, 1511
ScaI	AGTACT	1 cut(s)	608
SchI	GAGTC	4 cut(s)	491, 766, 1177, 1206
ScrFI	CCNGG	7 cut(s)	24, 165, 780, 790, 1185, 1372, 1586
SfaNI	GCATC	5 cut(s)	37, 531, 609, 1100, 1442
SfcI	CTRYAG	5 cut(s)	186, 229, 1404, 1559, 1630
SfoI	GGCGCC	1 cut(s)	421
SinI	GGWCC	3 cut(s)	1181, 1323, 1511
SmiMI	CAYNNNNRTG	2 cut(s)	1350, 1449
SmlI	CTYRAG	2 cut(s)	266, 1841
SmoI	CTYRAG	2 cut(s)	266, 1841
SpeI	ACTAGT	1 cut(s)	260
SsiI	CCGC	1 cut(s)	1930
SspDI	GGCGCC	1 cut(s)	419
SspMI	CTAG	4 cut(s)	261, 956, 1277, 1580
StyD4I	CCNGG	7 cut(s)	22, 163, 778, 788, 1183, 1370, 1584
StyI	CCWWGG	3 cut(s)	297, 1131, 1734
TaaI	ACNGT	3 cut(s)	530, 575, 1205
TaiI	ACGT	1 cut(s)	1470
TaqI	TCGA	3 cut(s)	1152, 1200, 1332
TatI	WGTACW	3 cut(s)	530, 606, 1918
TauI	GCSGC	1 cut(s)	1932
TfiI	GAWTC	5 cut(s)	13, 843, 1400, 1538, 1707
Tru1I	TTAA	6 cut(s)	56, 512, 540, 570, 1257, 1416
Tru9I	TTAA	6 cut(s)	56, 512, 540, 570, 1257, 1416
TscAI	CASTG	4 cut(s)	358, 1003, 1018, 1560
TseFI	GTSAC	2 cut(s)	761, 1169
TseI	GCWGC	9 cut(s)	219, 345, 395, 398, 783, 1084, 1269, 1406, 1558
Tsp45I	GTSAC	2 cut(s)	761, 1169
TspRI	CASTG	4 cut(s)	358, 1003, 1018, 1560
VpaK11BI	GGWCC	3 cut(s)	1181, 1323, 1511
VspI	ATTAAT	2 cut(s)	512, 540
XagI	CCTNNNNNAGG	1 cut(s)	168
XapI	RAATTY	2 cut(s)	152, 946
XbaI	TCTAGA	2 cut(s)	1276, 1579
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1922
XmiI	GTMKAC	3 cut(s)	1200, 1629, 1690
XspI	CTAG	4 cut(s)	261, 956, 1277, 1580
ZrmI	AGTACT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.