Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000727.1

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

15719 .. 22112

Gene Structure 6394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000727.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2076 bp

atggctggaacaccaccggaatgcggccataggcagtggctcaccgccgccggccaaaactcaatatttcacaaaactcctaacatcaaacctcgccgacgtcggagatcggagaaccgatcgggtccgaaaacactcaactgcgctgccttgcagtgccactatggacgagaatcggcactagaggacaccagagggacgaccagacggaggagacgatcctatctggaaagtttcgtccccggagacagtcgcagttcgcatcaaaatccgggtcgggtcggccgggtccaggtgcttgacgaaattgttttgaatggagttgatggttttgagctttatctcgtgtggcatatgaagacgcagcgggatttagaggtcagagtgacgagtaaccgtcgaaggcttagttgttgtcgtagcttggacgtaaagtgtactcttggttttagtttttcgctgtataaagtcatggaaaccccaacggagcaaaccgacgtccacgtcatcctctcggagcagcgcagggagctcttggcggccaaaaccctagacgccgacttcgacttggccttcaatctccaaatgcaagaagccatgaccgcctctctggcgctcaatccatcaccgagtacttcgcagtctcctcctccgtcgctgcggtacgagccaaacgacgacgtgttggacatcgccgccacgctgctgctggaggacgtggagaggttctcacaggagtacgaggaccacgagcgcagcgttttggaggcgaggaaggcgaaggaggacctggaccgtcggattcacgaccacaagttcgcgatcgacgtcagtgacttgccggaggaatactggaggaatcatggggacttgtacgaacggccgttctgtacggatggggcgtcgtcgtcgtcgggaaaagctgcggcggagacagagtgtttgagattgtactgcaagggtttgattagtgaagagttggtgaagaatgtgaaaatggcggtgggtggaattggggttgcgatttgtgaccctagagataatctggttttcgaggtgaagaagaatatggaggcggtggttgagggtgagagactgagcgatgaggctgcggagcttgaggctctggttgaagggcttaataaagctcttactatggacttgaagaatgtcacatttttctgtgatgatagcaagctttaccaatattttacaaacagagtggttcctggaaacagcaaaattgcaacactagtcaaccaagttgctcttctacaaaaagaatttgaatcctgcagcccttcacttgtggcacgtggtgatattaagtttgcatttaaatttgcaagagaggctatagtttcccagatcacctggcaagcagaaacaagcaatggcaagtgtttgaaggagacttgtgtcatatgttatgaagaaactgatgttgctcgaatgttttcaatcgatggttgtctgcacaggtattgcatttcttgtatgaaacagcacgtggaagtaaggttgcttaatgggatggtggcacattgtcctcatgaaggctgcaaatccgaagtgaatattgatagctatgagaatttcttcttggcacctaaaatagttgaggttatgaaccaacgaatcaaggagtcttctattcatgttacagacagagtctattgccaatatcccaagtgttctgcattaatgtccaagaaggagatcttagaatataccaaaacttcttatgttggtgcggaggaatctggagccagaaaatgcatgaaatgccactactatttttgtatcaagtgcttggttccttggcattttgaattgacctgtgatgagtaccaaacgtcacacaatttccctaaagaacatcaaatgctgaagtcactggctacaaagagactctggcggcagggtgttaagtgcaaccacatggttgaacttgcacatgatgtggatatcagttttgctacacttgtggagctgaatggaaggacaagaaaccttgttcctgcgcactctgggacgagcagtacatacttgcaacacaataagcggcttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

691

Amino Acids

78.66

Weight (kDa)

6.77

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	503
AatII	GACGTC	3 cut(s)	103, 501, 831
Acc16I	TGCGCA	1 cut(s)	2025
AccB1I	GGYRCC	1 cut(s)	1606
AccII	CGCG	1 cut(s)	821
AclWI	GGATC	1 cut(s)	213
AcoI	YGGCCR	5 cut(s)	25, 52, 283, 540, 881
AcsI	RAATTY	3 cut(s)	1283, 1340, 1594
AcuI	CTGAAG	1 cut(s)	1910
AcvI	CACGTG	2 cut(s)	1316, 1510
AcyI	GRCGYC	5 cut(s)	100, 498, 555, 828, 902
AdeI	CACNNNGTG	1 cut(s)	1319
AfaI	GTAC	9 cut(s)	439, 634, 665, 740, 875, 892, 953, 1850, 2044
AfiI	CCNNNNNNNGG	4 cut(s)	23, 210, 292, 1556
AflIII	ACRYGT	1 cut(s)	681
AhlI	ACTAGT	1 cut(s)	1252
AjiI	CACGTC	3 cut(s)	505, 682, 718
AjnI	CCWGG	4 cut(s)	291, 789, 1228, 1373
AjuI	GAANNNNNNNTTGG	4 cut(s)	1254, 1286, 1586, 1618
AluBI	AGCT	9 cut(s)	337, 423, 532, 923, 1117, 1148, 1198, 1587, 1993
AluI	AGCT	9 cut(s)	337, 423, 532, 923, 1117, 1148, 1198, 1587, 1993
Alw21I	GWGCWC	1 cut(s)	534
Alw26I	GTCTC	7 cut(s)	208, 240, 648, 926, 1087, 1406, 1903
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	6 cut(s)	25, 52, 283, 540, 570, 881
ApoI	RAATTY	3 cut(s)	1283, 1340, 1594
ArsI	GACNNNNNNTTYG	8 cut(s)	259, 291, 545, 577, 800, 832, 925, 957
AseI	ATTAAT	1 cut(s)	1703
Asp700I	GAANNNNTTC	2 cut(s)	1456, 1598
AspLEI	GCGC	5 cut(s)	146, 525, 616, 756, 2026
AspS9I	GGNCC	5 cut(s)	125, 289, 745, 787, 793
AsuC2I	CCSGG	3 cut(s)	243, 273, 287
AsuHPI	GGTGA	7 cut(s)	34, 618, 994, 1069, 1100, 1331, 1363
AvaII	GGWCC	5 cut(s)	125, 289, 745, 787, 793
BanI	GGYRCC	1 cut(s)	1606
BanII	GRGCYC	1 cut(s)	534
BauI	CACGAG	2 cut(s)	344, 749
BbrPI	CACGTG	2 cut(s)	1316, 1510
BbsI	GAAGAC	2 cut(s)	365, 1641
Bbv12I	GWGCWC	1 cut(s)	534
BccI	CCATC	5 cut(s)	320, 631, 890, 1460, 1528
BceAI	ACGGC	2 cut(s)	868, 896
BcgI	CGANNNNNNTGC	2 cut(s)	1091, 1125
BciT130I	CCWGG	4 cut(s)	293, 791, 1230, 1375
BcnI	CCSGG	3 cut(s)	243, 273, 287
BcoDI	GTCTC	7 cut(s)	208, 240, 648, 926, 1087, 1406, 1903
BcuI	ACTAGT	1 cut(s)	1252
BfaI	CTAG	4 cut(s)	182, 551, 1035, 1253
BfmI	CTRYAG	2 cut(s)	1294, 1356
BfoI	RGCGCY	1 cut(s)	617
BglI	GCCNNNNNGGC	1 cut(s)	611
BglII	AGATCT	1 cut(s)	1719
BmcAI	AGTACT	1 cut(s)	634
Bme1390I	CCNGG	7 cut(s)	243, 273, 287, 293, 791, 1230, 1375
Bme18I	GGWCC	5 cut(s)	125, 289, 745, 787, 793
BmgBI	CACGTC	3 cut(s)	505, 682, 718
BmgT120I	GGNCC	5 cut(s)	125, 289, 745, 787, 793
BmiI	GGNNCC	6 cut(s)	126, 290, 1227, 1608, 1768, 1818
BmrFI	CCNGG	7 cut(s)	243, 273, 287, 293, 791, 1230, 1375
BmsI	GCATC	1 cut(s)	271
BoxI	GACNNNNGTC	1 cut(s)	1418
BpiI	GAAGAC	2 cut(s)	365, 1641
BplI	GAGNNNNNCTC	2 cut(s)	713, 745
BpmI	CTGGAG	3 cut(s)	731, 874, 1785
BpuEI	CTTGAG	1 cut(s)	1139
BpuMI	CCSGG	3 cut(s)	243, 273, 287
Bsa29I	ATCGAT	1 cut(s)	1464
BsaAI	YACGTR	2 cut(s)	1316, 1510
BsaHI	GRCGYC	5 cut(s)	100, 498, 555, 828, 902
BsaJI	CCNNGG	2 cut(s)	241, 1820
BsaWI	WCCGGW	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	923, 953
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 210, 292, 1556
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	857, 1902
Bse3DI	GCAATG	1 cut(s)	1399
BseBI	CCWGG	4 cut(s)	293, 791, 1230, 1375
BseCI	ATCGAT	1 cut(s)	1464
BseDI	CCNNGG	2 cut(s)	241, 1820
BseGI	GGATG	3 cut(s)	507, 901, 1539
BseLI	CCNNNNNNNGG	4 cut(s)	23, 210, 292, 1556
BseMI	GCAATG	1 cut(s)	1399
BseMII	CTCAG	1 cut(s)	1088
BseNI	ACTGG	2 cut(s)	857, 1902
BseRI	GAGGAG	3 cut(s)	226, 636, 639
BseX3I	CGGCCG	2 cut(s)	283, 881
BsgI	GTGCAG	1 cut(s)	1460
Bsh1236I	CGCG	1 cut(s)	821
Bsh1285I	CGRYCG	4 cut(s)	122, 286, 825, 884
BshFI	GGCC	6 cut(s)	27, 54, 285, 542, 572, 883
BshNI	GGYRCC	1 cut(s)	1606
BshVI	ATCGAT	1 cut(s)	1464
BsiEI	CGRYCG	4 cut(s)	122, 286, 825, 884
BsiHKAI	GWGCWC	1 cut(s)	534
BsiSI	CCGG	6 cut(s)	17, 51, 243, 272, 286, 842
BslFI	GGGAC	4 cut(s)	211, 224, 881, 2047
BslI	CCNNNNNNNGG	4 cut(s)	23, 210, 292, 1556
BsmAI	GTCTC	7 cut(s)	208, 240, 648, 926, 1087, 1406, 1903
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	4 cut(s)	211, 224, 881, 2047
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	6 cut(s)	27, 54, 285, 542, 572, 883
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	6 cut(s)	107, 119, 218, 822, 1368, 1719
Bsp68I	TCGCGA	1 cut(s)	821
BspANI	GGCC	6 cut(s)	27, 54, 285, 542, 572, 883
BspCNI	CTCAG	1 cut(s)	1089
BspDI	ATCGAT	1 cut(s)	1464
BspFNI	CGCG	1 cut(s)	821
BspHI	TCATGA	1 cut(s)	1552
BspLI	GGNNCC	6 cut(s)	126, 290, 1227, 1608, 1768, 1818
BspMAI	CTGCAG	1 cut(s)	1298
BspPI	GGATC	1 cut(s)	213
BspQI	GCTCTTC	1 cut(s)	1275
BspT107I	GGYRCC	1 cut(s)	1606
BsrDI	GCAATG	1 cut(s)	1399
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	857, 1902
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	241, 1820
BssMI	GATC	6 cut(s)	107, 119, 218, 822, 1368, 1719
BssNI	GRCGYC	5 cut(s)	100, 498, 555, 828, 902
BssSI	CACGAG	2 cut(s)	344, 749
BssT1I	CCWWGG	1 cut(s)	1820
Bst2BI	CACGAG	2 cut(s)	344, 749
Bst2UI	CCWGG	4 cut(s)	293, 791, 1230, 1375
Bst4CI	ACNGT	3 cut(s)	251, 398, 797
Bst6I	CTCTTC	2 cut(s)	969, 1275
BstACI	GRCGYC	5 cut(s)	100, 498, 555, 828, 902
BstAPI	GCANNNNNTGC	1 cut(s)	1785
BstBAI	YACGTR	2 cut(s)	1316, 1510
BstC8I	GCNNGC	3 cut(s)	52, 1196, 1380
BstDEI	CTNAG	3 cut(s)	407, 1097, 1723
BstENI	CCTNNNNNAGG	1 cut(s)	1554
BstF5I	GGATG	3 cut(s)	507, 901, 1539
BstFNI	CGCG	1 cut(s)	821
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	5 cut(s)	146, 525, 616, 756, 2026
BstKTI	GATC	6 cut(s)	110, 122, 221, 825, 1371, 1722
BstMAI	GTCTC	7 cut(s)	208, 240, 648, 926, 1087, 1406, 1903
BstMBI	GATC	6 cut(s)	107, 119, 218, 822, 1368, 1719
BstMCI	CGRYCG	4 cut(s)	122, 286, 825, 884
BstMWI	GCNNNNNNNGC	7 cut(s)	529, 602, 611, 667, 776, 1352, 1785
BstNI	CCWGG	4 cut(s)	293, 791, 1230, 1375
BstPAI	GACNNNNGTC	1 cut(s)	1418
BstSCI	CCNGG	7 cut(s)	241, 271, 285, 291, 789, 1228, 1373
BstSFI	CTRYAG	2 cut(s)	1294, 1356
BstUI	CGCG	1 cut(s)	821
BstV2I	GAAGAC	2 cut(s)	365, 1641
BstX2I	RGATCY	1 cut(s)	1719
BstYI	RGATCY	1 cut(s)	1719
BstZI	CGGCCG	2 cut(s)	283, 881
Bsu15I	ATCGAT	1 cut(s)	1464
BsuRI	GGCC	6 cut(s)	27, 54, 285, 542, 572, 883
BsuTUI	ATCGAT	1 cut(s)	1464
BtgZI	GCGATG	2 cut(s)	676, 1116
BtrI	CACGTC	3 cut(s)	505, 682, 718
BtsCI	GGATG	3 cut(s)	507, 901, 1539
BtsI	GCAGTG	2 cut(s)	41, 161
BtsIMutI	CAGTG	4 cut(s)	41, 161, 838, 1895
BtuMI	TCGCGA	1 cut(s)	821
Cac8I	GCNNGC	3 cut(s)	52, 1196, 1380
CciI	TCATGA	1 cut(s)	1552
CfoI	GCGC	5 cut(s)	146, 525, 616, 756, 2026
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	5 cut(s)	125, 289, 745, 787, 793
ClaI	ATCGAT	1 cut(s)	1464
CseI	GACGC	3 cut(s)	370, 563, 891
Csp6I	GTAC	9 cut(s)	438, 633, 664, 739, 874, 891, 952, 1849, 2043
CspCI	CAANNNNNGTGG	2 cut(s)	1203, 1238
CviAII	CATG	8 cut(s)	472, 598, 863, 1553, 1658, 1780, 1942, 1958
CviQI	GTAC	9 cut(s)	438, 633, 664, 739, 874, 891, 952, 1849, 2043
DdeI	CTNAG	3 cut(s)	407, 1097, 1723
DpnI	GATC	6 cut(s)	109, 121, 220, 824, 1370, 1721
DpnII	GATC	6 cut(s)	107, 119, 218, 822, 1368, 1719
DraI	TTTAAA	1 cut(s)	1339
DraIII	CACNNNGTG	1 cut(s)	1319
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
EaeI	YGGCCR	5 cut(s)	25, 52, 283, 540, 881
EagI	CGGCCG	2 cut(s)	283, 881
Eam1104I	CTCTTC	2 cut(s)	969, 1275
EarI	CTCTTC	2 cut(s)	969, 1275
EciI	GGCGGA	1 cut(s)	944
Ecl136II	GAGCTC	1 cut(s)	532
EclXI	CGGCCG	2 cut(s)	283, 881
Eco130I	CCWWGG	1 cut(s)	1820
Eco24I	GRGCYC	1 cut(s)	534
Eco32I	GATATC	1 cut(s)	1969
Eco47I	GGWCC	5 cut(s)	125, 289, 745, 787, 793
Eco52I	CGGCCG	2 cut(s)	283, 881
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	1910
Eco72I	CACGTG	2 cut(s)	1316, 1510
EcoICRI	GAGCTC	1 cut(s)	532
EcoNI	CCTNNNNNAGG	1 cut(s)	1554
EcoO109I	RGGNCCY	1 cut(s)	787
EcoRII	CCWGG	4 cut(s)	291, 789, 1228, 1373
EcoRV	GATATC	1 cut(s)	1969
EcoT14I	CCWWGG	1 cut(s)	1820
EcoT22I	ATGCAT	1 cut(s)	1781
EcoT38I	GRGCYC	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	1820
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	8 cut(s)	475, 601, 866, 1556, 1661, 1783, 1945, 1961
FalI	AAGNNNNNCTT	4 cut(s)	1254, 1286, 1706, 1738
FaqI	GGGAC	4 cut(s)	211, 224, 881, 2047
FatI	CATG	8 cut(s)	471, 597, 862, 1552, 1657, 1779, 1941, 1957
FauI	CCCGC	1 cut(s)	360
FauNDI	CATATG	2 cut(s)	354, 1424
FokI	GGATG	3 cut(s)	494, 908, 1546
FriOI	GRGCYC	1 cut(s)	534
FspBI	CTAG	4 cut(s)	182, 551, 1035, 1253
FspI	TGCGCA	1 cut(s)	2025
GlaI	GCGC	5 cut(s)	145, 524, 615, 755, 2025
GsuI	CTGGAG	3 cut(s)	731, 874, 1785
HaeII	RGCGCY	1 cut(s)	617
HaeIII	GGCC	6 cut(s)	27, 54, 285, 542, 572, 883
HapII	CCGG	6 cut(s)	17, 51, 243, 272, 286, 842
HgaI	GACGC	3 cut(s)	370, 563, 891
HhaI	GCGC	5 cut(s)	146, 525, 616, 756, 2026
Hin1I	GRCGYC	5 cut(s)	100, 498, 555, 828, 902
Hin1II	CATG	8 cut(s)	475, 601, 866, 1556, 1661, 1783, 1945, 1961
Hin6I	GCGC	5 cut(s)	144, 523, 614, 754, 2024
HinP1I	GCGC	5 cut(s)	144, 523, 614, 754, 2024
HincII	GTYRAC	1 cut(s)	1258
HindII	GTYRAC	1 cut(s)	1258
HindIII	AAGCTT	1 cut(s)	1196
HinfI	GANTC	9 cut(s)	173, 802, 859, 1289, 1638, 1646, 1671, 1760, 1911
HpaII	CCGG	6 cut(s)	17, 51, 243, 272, 286, 842
HphI	GGTGA	7 cut(s)	34, 618, 994, 1069, 1100, 1331, 1363
Hpy166II	GTNNAC	3 cut(s)	438, 502, 1258
Hpy188I	TCNGA	7 cut(s)	105, 112, 129, 383, 517, 801, 1570
Hpy188III	TCNNGA	6 cut(s)	227, 806, 820, 915, 1553, 1764
Hpy8I	GTNNAC	3 cut(s)	438, 502, 1258
HpyCH4III	ACNGT	3 cut(s)	251, 398, 797
HpyF10VI	GCNNNNNNNGC	7 cut(s)	529, 602, 611, 667, 776, 1352, 1785
HpyF3I	CTNAG	3 cut(s)	407, 1097, 1723
Hsp92I	GRCGYC	5 cut(s)	100, 498, 555, 828, 902
Hsp92II	CATG	8 cut(s)	475, 601, 866, 1556, 1661, 1783, 1945, 1961
HspAI	GCGC	5 cut(s)	144, 523, 614, 754, 2024
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	6 cut(s)	107, 119, 218, 822, 1368, 1719
LguI	GCTCTTC	1 cut(s)	1275
LmnI	GCTCC	6 cut(s)	487, 517, 529, 1114, 1766, 1990
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	4 cut(s)	182, 551, 1035, 1253
MaeIII	GTNAC	8 cut(s)	385, 392, 833, 1028, 1171, 1660, 1857, 1893
MalI	GATC	6 cut(s)	109, 121, 220, 824, 1370, 1721
MboI	GATC	6 cut(s)	107, 119, 218, 822, 1368, 1719
MflI	RGATCY	1 cut(s)	1719
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	8 cut(s)	306, 1011, 1242, 1283, 1340, 1594, 1832, 1864
MlyI	GAGTC	3 cut(s)	1655, 1680, 1905
MmeI	TCCRAC	3 cut(s)	83, 666, 779
Mph1103I	ATGCAT	1 cut(s)	1781
MroNI	GCCGGC	1 cut(s)	50
MroXI	GAANNNNTTC	2 cut(s)	1456, 1598
MseI	TTAA	6 cut(s)	1140, 1326, 1338, 1527, 1703, 1929
MslI	CAYNNNNRTG	1 cut(s)	19
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	6 cut(s)	17, 51, 243, 272, 286, 842
MspR9I	CCNGG	7 cut(s)	243, 273, 287, 293, 791, 1230, 1375
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	4 cut(s)	293, 791, 1230, 1375
MvnI	CGCG	1 cut(s)	821
MwoI	GCNNNNNNNGC	7 cut(s)	529, 602, 611, 667, 776, 1352, 1785
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	3 cut(s)	243, 273, 287
NdeI	CATATG	2 cut(s)	354, 1424
NdeII	GATC	6 cut(s)	107, 119, 218, 822, 1368, 1719
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	8 cut(s)	475, 601, 866, 1556, 1661, 1783, 1945, 1961
NlaIV	GGNNCC	6 cut(s)	126, 290, 1227, 1608, 1768, 1818
NmuCI	GTSAC	6 cut(s)	385, 833, 1028, 1171, 1857, 1893
NruI	TCGCGA	1 cut(s)	821
NsbI	TGCGCA	1 cut(s)	2025
NsiI	ATGCAT	1 cut(s)	1781
PagI	TCATGA	1 cut(s)	1552
PciSI	GCTCTTC	1 cut(s)	1275
PcsI	WCGNNNNNNNCGW	7 cut(s)	214, 561, 672, 747, 756, 825, 899
PctI	GAATGC	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	52
PdmI	GAANNNNTTC	2 cut(s)	1456, 1598
PfeI	GAWTC	6 cut(s)	173, 802, 859, 1289, 1638, 1760
PflFI	GACNNNGTC	1 cut(s)	1670
PfoI	TCCNGGA	1 cut(s)	1228
Ple19I	CGATCG	2 cut(s)	122, 825
PleI	GAGTC	3 cut(s)	1654, 1679, 1905
PmaCI	CACGTG	2 cut(s)	1316, 1510
PmlI	CACGTG	2 cut(s)	1316, 1510
PpsI	GAGTC	3 cut(s)	1654, 1679, 1905
Ppu21I	YACGTR	2 cut(s)	1316, 1510
PpuMI	RGGWCCY	1 cut(s)	787
PshAI	GACNNNNGTC	1 cut(s)	1418
PshBI	ATTAAT	1 cut(s)	1703
Psp124BI	GAGCTC	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	4 cut(s)	291, 789, 1228, 1373
PspCI	CACGTG	2 cut(s)	1316, 1510
PspGI	CCWGG	4 cut(s)	291, 789, 1228, 1373
PspN4I	GGNNCC	6 cut(s)	126, 290, 1227, 1608, 1768, 1818
PspPI	GGNCC	5 cut(s)	125, 289, 745, 787, 793
PspPPI	RGGWCCY	1 cut(s)	787
PstI	CTGCAG	1 cut(s)	1298
PsuI	RGATCY	1 cut(s)	1719
PsyI	GACNNNGTC	1 cut(s)	1670
PvuI	CGATCG	2 cut(s)	122, 825
RruI	TCGCGA	1 cut(s)	821
RsaI	GTAC	9 cut(s)	439, 634, 665, 740, 875, 892, 953, 1850, 2044
RsaNI	GTAC	9 cut(s)	438, 633, 664, 739, 874, 891, 952, 1849, 2043
RseI	CAYNNNNRTG	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	534
SapI	GCTCTTC	1 cut(s)	1275
SaqAI	TTAA	6 cut(s)	1140, 1326, 1338, 1527, 1703, 1929
Sau3AI	GATC	6 cut(s)	107, 119, 218, 822, 1368, 1719
Sau96I	GGNCC	5 cut(s)	125, 289, 745, 787, 793
ScaI	AGTACT	1 cut(s)	634
SchI	GAGTC	3 cut(s)	1655, 1680, 1905
ScrFI	CCNGG	7 cut(s)	243, 273, 287, 293, 791, 1230, 1375
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	2 cut(s)	1294, 1356
SinI	GGWCC	5 cut(s)	125, 289, 745, 787, 793
SmiI	ATTTAAAT	1 cut(s)	1339
SmiMI	CAYNNNNRTG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	1118
SmoI	CTYRAG	1 cut(s)	1118
SpeI	ACTAGT	1 cut(s)	1252
Sse9I	AATT	8 cut(s)	306, 1011, 1242, 1283, 1340, 1594, 1832, 1864
SspI	AATATT	3 cut(s)	66, 1208, 1579
SspMI	CTAG	4 cut(s)	182, 551, 1035, 1253
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	7 cut(s)	241, 271, 285, 291, 789, 1228, 1373
StyI	CCWWGG	1 cut(s)	1820
SwaI	ATTTAAAT	1 cut(s)	1339
TaaI	ACNGT	3 cut(s)	251, 398, 797
TaqI	TCGA	6 cut(s)	400, 564, 825, 1053, 1450, 1464
TasI	AATT	8 cut(s)	306, 1011, 1242, 1283, 1340, 1594, 1832, 1864
TatI	WGTACW	4 cut(s)	437, 632, 951, 2042
TauI	GCSGC	7 cut(s)	27, 50, 542, 698, 929, 1921, 2068
TfiI	GAWTC	6 cut(s)	173, 802, 859, 1289, 1638, 1760
Tru1I	TTAA	6 cut(s)	1140, 1326, 1338, 1527, 1703, 1929
Tru9I	TTAA	6 cut(s)	1140, 1326, 1338, 1527, 1703, 1929
TscAI	CASTG	4 cut(s)	41, 161, 838, 1902
TseFI	GTSAC	6 cut(s)	385, 833, 1028, 1171, 1857, 1893
Tsp45I	GTSAC	6 cut(s)	385, 833, 1028, 1171, 1857, 1893
TspDTI	ATGAA	7 cut(s)	371, 1446, 1514, 1569, 1643, 1646, 1796
TspGWI	ACGGA	4 cut(s)	223, 500, 642, 908
TspRI	CASTG	4 cut(s)	41, 161, 838, 1902
Tth111I	GACNNNGTC	1 cut(s)	1670
VpaK11BI	GGWCC	5 cut(s)	125, 289, 745, 787, 793
VspI	ATTAAT	1 cut(s)	1703
XagI	CCTNNNNNAGG	1 cut(s)	1554
XapI	RAATTY	3 cut(s)	1283, 1340, 1594
XcmI	CCANNNNNNNNNTGG	1 cut(s)	706
XmnI	GAANNNNTTC	2 cut(s)	1456, 1598
XspI	CTAG	4 cut(s)	182, 551, 1035, 1253
ZraI	GACGTC	3 cut(s)	101, 499, 829
ZrmI	AGTACT	1 cut(s)	634
Zsp2I	ATGCAT	1 cut(s)	1781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.