Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030258.1

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1162

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030258.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 611 bp

atgttttcaatcgatggttgtctgcacaggtattgcatttcttgtatgaaacagcacgtggaagtaaggttgcttaatgggatggtggcacattgtcctcatgaaggctgcaaatccgaagtgaatattgatagctatgagaatttcttcttggcacctaaaatagttgaggttatgaaccaacgaatcaaggagtcttctattcatgttacagacagagtctattgccaatatcccaagtgttctgcattaatgtccaagaaggagatcttagaatataccaaaacttcttatgttggtgcggaggaatctggagccagaaaatgcatgaaatgccactactatttttgtatcaagtgcttggttccttggcattttgaattgacctgtgatgagtaccaaacgtcacacaatttccctaaagaacatcaaatgctgaagtcactggctacaaagagactctggcggcagtgtgttaagtgcaaccacatggttgaacttgcacatggttgttaccacattacttgcagatgtggatatcagttttgctacacttgtggagctgaatggaaggacaagaaaccttgttcctgcgcactctgggacgagca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

203

Amino Acids

23.81

Weight (kDa)

8.17

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	595
AccB1I	GGYRCC	1 cut(s)	154
AciI	CCGC	2 cut(s)	302, 466
AcsI	RAATTY	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	458
AcvI	CACGTG	1 cut(s)	58
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	3 cut(s)	9, 380, 497
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	2 cut(s)	135, 563
AluI	AGCT	2 cut(s)	135, 563
Alw26I	GTCTC	1 cut(s)	451
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	142
AseI	ATTAAT	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	154
BbrPI	CACGTG	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	2 cut(s)	8, 76
BcoDI	GTCTC	1 cut(s)	451
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	2 cut(s)	109, 467
BlsI	GCNGC	2 cut(s)	110, 468
BmiI	GGNNCC	3 cut(s)	156, 316, 366
BpiI	GAAGAC	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	333
Bsa29I	ATCGAT	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	450
BseXI	GCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	154
BshVI	ATCGAT	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	451
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	2 cut(s)	302, 466
BspDI	ATCGAT	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	3 cut(s)	156, 316, 366
BspT107I	GGYRCC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstBAI	YACGTR	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	271
BstENI	CCTNNNNNAGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
Bsu15I	ATCGAT	1 cut(s)	12
BsuTUI	ATCGAT	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	2 cut(s)	443, 476
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	1 cut(s)	596
ClaI	ATCGAT	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	397
CspCI	CAANNNNNGTGG	2 cut(s)	506, 541
CviAII	CATG	5 cut(s)	101, 206, 328, 490, 506
CviJI	RGCY	5 cut(s)	108, 135, 317, 449, 563
CviKI_1	RGCY	5 cut(s)	108, 135, 317, 449, 563
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	368
Eco32I	GATATC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	458
Eco72I	CACGTG	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	368
EcoT22I	ATGCAT	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	5 cut(s)	104, 209, 331, 493, 509
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	5 cut(s)	100, 205, 327, 489, 505
Fnu4HI	GCNGC	2 cut(s)	109, 467
FokI	GGATG	1 cut(s)	94
Fsp4HI	GCNGC	2 cut(s)	109, 467
FspI	TGCGCA	1 cut(s)	595
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	2 cut(s)	109, 467
GsuI	CTGGAG	1 cut(s)	333
HhaI	GCGC	1 cut(s)	596
Hin1II	CATG	5 cut(s)	104, 209, 331, 493, 509
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HinfI	GANTC	5 cut(s)	186, 194, 219, 308, 459
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	2 cut(s)	101, 312
HpyAV	CCTTC	3 cut(s)	98, 256, 565
HpyCH4IV	ACGT	2 cut(s)	57, 404
HpyCH4V	TGCA	8 cut(s)	25, 36, 111, 248, 327, 483, 503, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpyF3I	CTNAG	1 cut(s)	271
HpySE526I	ACGT	2 cut(s)	57, 404
Hsp92II	CATG	5 cut(s)	104, 209, 331, 493, 509
HspAI	GCGC	1 cut(s)	594
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	314, 560
LpnPI	CCDG	8 cut(s)	13, 297, 331, 400, 431, 448, 586, 604
Lsp1109I	GCAGC	1 cut(s)	95
MaeII	ACGT	2 cut(s)	57, 404
MaeIII	GTNAC	4 cut(s)	208, 405, 441, 512
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	2 cut(s)	139, 189
MflI	RGATCY	1 cut(s)	267
MluCI	AATT	3 cut(s)	142, 380, 412
MlyI	GAGTC	3 cut(s)	203, 228, 453
MnlI	CCTC	3 cut(s)	108, 163, 298
Mph1103I	ATGCAT	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	3 cut(s)	75, 251, 477
MwoI	GCNNNNNNNGC	1 cut(s)	333
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	5 cut(s)	104, 209, 331, 493, 509
NlaIV	GGNNCC	3 cut(s)	156, 316, 366
NmuCI	GTSAC	2 cut(s)	405, 441
NsbI	TGCGCA	1 cut(s)	595
NsiI	ATGCAT	1 cut(s)	329
PagI	TCATGA	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	186, 308
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	110, 468
PleI	GAGTC	3 cut(s)	202, 227, 453
PmaCI	CACGTG	1 cut(s)	58
PmlI	CACGTG	1 cut(s)	58
PpsI	GAGTC	3 cut(s)	202, 227, 453
Ppu21I	YACGTR	1 cut(s)	58
PshBI	ATTAAT	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	58
PspN4I	GGNNCC	3 cut(s)	156, 316, 366
PsuI	RGATCY	1 cut(s)	267
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SaqAI	TTAA	3 cut(s)	75, 251, 477
SatI	GCNGC	2 cut(s)	109, 467
Sau3AI	GATC	1 cut(s)	267
SchI	GAGTC	3 cut(s)	203, 228, 453
Sse9I	AATT	3 cut(s)	142, 380, 412
SsiI	CCGC	2 cut(s)	302, 466
SspI	AATATT	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	368
TaiI	ACGT	2 cut(s)	60, 407
TaqI	TCGA	1 cut(s)	12
TasI	AATT	3 cut(s)	142, 380, 412
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	2 cut(s)	186, 308
Tru1I	TTAA	3 cut(s)	75, 251, 477
Tru9I	TTAA	3 cut(s)	75, 251, 477
TscAI	CASTG	2 cut(s)	450, 476
TseFI	GTSAC	2 cut(s)	405, 441
TseI	GCWGC	1 cut(s)	108
Tsp45I	GTSAC	2 cut(s)	405, 441
TspDTI	ATGAA	5 cut(s)	62, 117, 191, 194, 344
TspRI	CASTG	2 cut(s)	450, 476
Tth111I	GACNNNGTC	1 cut(s)	218
VspI	ATTAAT	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	102
XapI	RAATTY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.