Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

66468372 .. 66474968

Gene Structure 6597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG410000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1743 bp

ATGGAAACCCCAACGGAGCAAACCGACGTCCACGTCATCCTCTCGGAGCAGCGCAGGGAGCTCTTGGCGGCCAAAACCCTAGATGCCGACTTCGACTTGGCCTTCAATCTCCAAATGCAAGAAGCCATGACCGCCTCTCTGGCGCTCAATCCATCACCGAGTACTTCGCAGTCTCCTCCCCCGTCGCAGCGGTACGAGCCAAACGACGACGTGTTGGACATCGCCACCACGCTGCTGCTGGAGGACGTGGAGAGGTTCTCGCAGGAGTACGAGGACCACGAGCGCAGCGTTTTGGAGGCGAGGAAGGCGAAGGAGGACCTGGACCGTCGGATTCACGACCACAAGTTCGCGATCGACGTCAGTGGCTTGCCGGAGGAATACTGGAGGAATCACGGGGACTTGTACGAACGGCCGTTCTGTACGGATGGGGCGTCGTCGTCGTCGTCGTCGGGAAAAGCTGCGGCGGAGACAGAGTGTTTGAGGTTGTACTGCAAGGGTTTGATTAGTGAAGAGTTGGTGAAGAATGTGAAAATGGCGGTGGGTGGAATTGGGGTTGCGATTTGTGACCCTAGAGATAATCTGGTTTTCGAGGTGAAGAAGAATATGGAGGCGGTGGTTGAGGGTGTGAGACTGAGCGATGAGGCTGCGGAGCTTGAGGCTCTGGTTGAAGGGCTTAATAAAGCTCTTACTATGGACTTGAAGAATGTCACATTTTTCTGTGATGATAGCAAGCTTTACCAATATTTTACAAACAGAGTGGTTCCTGGAAACAGCAAAATTGCAACACTAGTCAACCAAGTTGCTCTTCTACAAAAAGAATTTGAATCCTGCAGCCCTTCACTTGTGGCACGTGGTGATATTAAGTTTGCATTTAAATTTGCAAGAGAGGCTATAGTTTCCCAGATCACCTGGCAAGCAGAAACAAGCAATGGCAAGTGTTTGAAGGAGACTTGTGTCATATGTTATGAAGAAACTGATGTTGCTCGAATGTTTTCAATCGATGGTTGTCTGCACAGGTTTTGCATTTCTTGTGTGAAAAAACATGTGGAAGTAAAGTTGCTTAGTGGGATGGTGGCACAGTGTCCACATGAAGCCTGTAATTCTGAGGTGAATATTGATAGCTATGAACAATTCTTGGCACCTAATCTTGTTGCGGTTATGAGCCAACGAATTAAGGAATCTTCTATTCCTGTTACAGAGAGAGTCTACTGCCCTTACCCCAAGTGTTCTGCCTTAATGTCCAAAATGGAGGTCTTTGAATATACCAAAACTTCTTACGTTGGTGCTGAAGAATCTGCAGCCAGGAAATGCATGAAATGTCGTTACTATTTTTGTTTTGATTGCATGGTTCCTTGGCATTACAAAATGAGCTGCGAAGAGTACAAACAATCACATCCATTTCCCCCCAAAGAAGATCAACTGCTGAATTCATTGGCTGAAACAAAACGGTGGCGCAACTGTAAGAAGTGCAACCACATGGTTGAACTTGCAGTAGGTTGTAACCACATCACTTGCAGGTGTGGATATGAGTTCTGCTACACTTGTGGAGCTGAATGGAAGAACAAGAAACCAACATGTTCCTGCCCACTCTGGGATGAGCGCTACATAATATATGAGCAGCCGCATCCAGTGCAGCCCATTATACATGAGCAGCCACGTCAAGTGCAGCCTATTGTACGTGTGCGCCCACGACAAGTTGCACCAGGAAATGAACAGCCAAGGCAGGTACGACCACGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

580

Amino Acids

66.1

Weight (kDa)

5.74

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	178 - 297	1.3e-19	Reverse transcriptase-like
IBR	PF01485	399 - 458	2.4e-10	IBR domain, a half RING-finger domain
IBR	PF01485	474 - 526	8.7e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	486 - 523	5e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1506
AasI	GACNNNNNNGTC	1 cut(s)	32
AatII	GACGTC	2 cut(s)	30, 360
Acc36I	ACCTGC	2 cut(s)	1506, 1714
AccB1I	GGYRCC	1 cut(s)	1138
AccI	GTMKAC	1 cut(s)	1206
AccII	CGCG	1 cut(s)	350
AcoI	YGGCCR	2 cut(s)	69, 410
AcsI	RAATTY	3 cut(s)	818, 875, 1426
AcuI	CTGAAG	1 cut(s)	1308
AcvI	CACGTG	1 cut(s)	851
AcyI	GRCGYC	3 cut(s)	27, 357, 431
AdeI	CACNNNGTG	1 cut(s)	854
AfaI	GTAC	9 cut(s)	163, 194, 269, 404, 421, 488, 1382, 1677, 1728
AfeI	AGCGCT	1 cut(s)	1601
AfiI	CCNNNNNNNGG	1 cut(s)	1591
AflIII	ACRYGT	4 cut(s)	210, 1042, 1574, 1678
AgsI	TTSAA	8 cut(s)	106, 668, 700, 824, 943, 996, 1259, 1484
AhlI	ACTAGT	1 cut(s)	787
AjiI	CACGTC	4 cut(s)	34, 211, 247, 1658
AjnI	CCWGG	5 cut(s)	318, 763, 908, 1301, 1702
AjuI	GAANNNNNNNTTGG	2 cut(s)	789, 821
AluBI	AGCT	8 cut(s)	61, 458, 652, 683, 733, 1122, 1371, 1550
AluI	AGCT	8 cut(s)	61, 458, 652, 683, 733, 1122, 1371, 1550
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	4 cut(s)	177, 461, 622, 941
Aor51HI	AGCGCT	1 cut(s)	1601
AoxI	GGCC	3 cut(s)	69, 99, 410
ApoI	RAATTY	3 cut(s)	818, 875, 1426
ArsI	GACNNNNNNTTYG	6 cut(s)	329, 361, 460, 492, 1236, 1268
Asp700I	GAANNNNTTC	1 cut(s)	991
AspLEI	GCGC	6 cut(s)	54, 145, 285, 1455, 1602, 1686
AspS9I	GGNCC	3 cut(s)	274, 316, 322
AsuHPI	GGTGA	6 cut(s)	147, 529, 604, 866, 898, 1120
AvaII	GGWCC	3 cut(s)	274, 316, 322
BanI	GGYRCC	1 cut(s)	1138
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	278
BbrPI	CACGTG	1 cut(s)	851
Bbv12I	GWGCWC	1 cut(s)	63
BccI	CCATC	4 cut(s)	160, 419, 995, 1063
BceAI	ACGGC	2 cut(s)	397, 425
BcgI	CGANNNNNNTGC	2 cut(s)	626, 660
BciT130I	CCWGG	5 cut(s)	320, 765, 910, 1303, 1704
BcoDI	GTCTC	4 cut(s)	177, 461, 622, 941
BcuI	ACTAGT	1 cut(s)	787
BfaI	CTAG	3 cut(s)	80, 570, 788
BfmI	CTRYAG	3 cut(s)	829, 891, 1296
BfoI	RGCGCY	2 cut(s)	146, 1603
BfuAI	ACCTGC	2 cut(s)	1506, 1714
BglI	GCCNNNNNGGC	1 cut(s)	140
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	5 cut(s)	320, 765, 910, 1303, 1704
Bme18I	GGWCC	3 cut(s)	274, 316, 322
BmgBI	CACGTC	4 cut(s)	34, 211, 247, 1658
BmgT120I	GGNCC	3 cut(s)	274, 316, 322
BmiI	GGNNCC	3 cut(s)	762, 1140, 1350
BmrFI	CCNGG	5 cut(s)	320, 765, 910, 1303, 1704
BmsI	GCATC	2 cut(s)	73, 1633
BoxI	GACNNNNGTC	1 cut(s)	953
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	2 cut(s)	260, 403
BpuEI	CTTGAG	1 cut(s)	674
Bsa29I	ATCGAT	1 cut(s)	999
BsaAI	YACGTR	2 cut(s)	851, 1679
BsaHI	GRCGYC	3 cut(s)	27, 357, 431
BsaJI	CCNNGG	2 cut(s)	1352, 1718
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	1591
Bse1I	ACTGG	2 cut(s)	386, 1628
Bse3DI	GCAATG	1 cut(s)	934
BseBI	CCWGG	5 cut(s)	320, 765, 910, 1303, 1704
BseCI	ATCGAT	1 cut(s)	999
BseDI	CCNNGG	2 cut(s)	1352, 1718
BseGI	GGATG	6 cut(s)	36, 430, 1074, 1393, 1600, 1624
BseLI	CCNNNNNNNGG	1 cut(s)	1591
BseMI	GCAATG	1 cut(s)	934
BseMII	CTCAG	2 cut(s)	623, 1095
BseNI	ACTGG	2 cut(s)	386, 1628
BseRI	GAGGAG	1 cut(s)	165
BseX3I	CGGCCG	1 cut(s)	410
BsgI	GTGCAG	3 cut(s)	995, 1652, 1685
Bsh1236I	CGCG	1 cut(s)	350
Bsh1285I	CGRYCG	2 cut(s)	354, 413
BshFI	GGCC	3 cut(s)	71, 101, 412
BshNI	GGYRCC	1 cut(s)	1138
BshVI	ATCGAT	1 cut(s)	999
BsiEI	CGRYCG	2 cut(s)	354, 413
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	1591
BsmAI	GTCTC	4 cut(s)	177, 461, 622, 941
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	3 cut(s)	71, 101, 412
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	351, 903, 1414
Bsp68I	TCGCGA	1 cut(s)	350
BspANI	GGCC	3 cut(s)	71, 101, 412
BspCNI	CTCAG	2 cut(s)	624, 1096
BspDI	ATCGAT	1 cut(s)	999
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	3 cut(s)	762, 1140, 1350
BspMAI	CTGCAG	2 cut(s)	833, 1300
BspMI	ACCTGC	2 cut(s)	1506, 1714
BspQI	GCTCTTC	1 cut(s)	810
BspT107I	GGYRCC	1 cut(s)	1138
BsrDI	GCAATG	1 cut(s)	934
BsrI	ACTGG	2 cut(s)	386, 1628
BssECI	CCNNGG	2 cut(s)	1352, 1718
BssMI	GATC	3 cut(s)	351, 903, 1414
BssNI	GRCGYC	3 cut(s)	27, 357, 431
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	2 cut(s)	1352, 1718
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	5 cut(s)	320, 765, 910, 1303, 1704
Bst4CI	ACNGT	4 cut(s)	326, 1080, 1449, 1460
Bst6I	CTCTTC	3 cut(s)	504, 810, 1371
BstACI	GRCGYC	3 cut(s)	27, 357, 431
BstAPI	GCANNNNNTGC	1 cut(s)	1630
BstBAI	YACGTR	2 cut(s)	851, 1679
BstC8I	GCNNGC	3 cut(s)	368, 731, 915
BstDEI	CTNAG	3 cut(s)	632, 1061, 1104
BstF5I	GGATG	6 cut(s)	36, 430, 1074, 1393, 1600, 1624
BstFNI	CGCG	1 cut(s)	350
BstH2I	RGCGCY	2 cut(s)	146, 1603
BstHHI	GCGC	6 cut(s)	54, 145, 285, 1455, 1602, 1686
BstKTI	GATC	3 cut(s)	354, 906, 1417
BstMAI	GTCTC	4 cut(s)	177, 461, 622, 941
BstMBI	GATC	3 cut(s)	351, 903, 1414
BstMCI	CGRYCG	2 cut(s)	354, 413
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 131, 140, 196, 305, 887, 1630
BstNI	CCWGG	5 cut(s)	320, 765, 910, 1303, 1704
BstNSI	RCATGY	2 cut(s)	1046, 1578
BstPAI	GACNNNNGTC	1 cut(s)	953
BstSCI	CCNGG	5 cut(s)	318, 763, 908, 1301, 1702
BstSFI	CTRYAG	3 cut(s)	829, 891, 1296
BstUI	CGCG	1 cut(s)	350
BstZI	CGGCCG	1 cut(s)	410
Bsu15I	ATCGAT	1 cut(s)	999
BsuRI	GGCC	3 cut(s)	71, 101, 412
BsuTUI	ATCGAT	1 cut(s)	999
BtgZI	GCGATG	2 cut(s)	205, 651
BtrI	CACGTC	4 cut(s)	34, 211, 247, 1658
BtsCI	GGATG	6 cut(s)	36, 430, 1074, 1393, 1600, 1624
BtsIMutI	CAGTG	3 cut(s)	367, 1085, 1635
BtuMI	TCGCGA	1 cut(s)	350
BveI	ACCTGC	2 cut(s)	1506, 1714
Cac8I	GCNNGC	3 cut(s)	368, 731, 915
CfoI	GCGC	6 cut(s)	54, 145, 285, 1455, 1602, 1686
Cfr13I	GGNCC	3 cut(s)	274, 316, 322
ClaI	ATCGAT	1 cut(s)	999
CseI	GACGC	1 cut(s)	420
Csp6I	GTAC	9 cut(s)	162, 193, 268, 403, 420, 487, 1381, 1676, 1727
CspCI	CAANNNNNGTGG	4 cut(s)	738, 773, 1493, 1528
CviAII	CATG	8 cut(s)	127, 1043, 1088, 1312, 1345, 1477, 1575, 1646
CviQI	GTAC	9 cut(s)	162, 193, 268, 403, 420, 487, 1381, 1676, 1727
DdeI	CTNAG	3 cut(s)	632, 1061, 1104
DpnI	GATC	3 cut(s)	353, 905, 1416
DpnII	GATC	3 cut(s)	351, 903, 1414
DraI	TTTAAA	1 cut(s)	874
DraIII	CACNNNGTG	1 cut(s)	854
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	2 cut(s)	69, 410
EagI	CGGCCG	1 cut(s)	410
Eam1104I	CTCTTC	3 cut(s)	504, 810, 1371
EarI	CTCTTC	3 cut(s)	504, 810, 1371
EciI	GGCGGA	1 cut(s)	479
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	410
Eco130I	CCWWGG	2 cut(s)	1352, 1718
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	3 cut(s)	274, 316, 322
Eco47III	AGCGCT	1 cut(s)	1601
Eco52I	CGGCCG	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	1308
Eco72I	CACGTG	1 cut(s)	851
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	1426
EcoRII	CCWGG	5 cut(s)	318, 763, 908, 1301, 1702
EcoT14I	CCWWGG	2 cut(s)	1352, 1718
EcoT22I	ATGCAT	1 cut(s)	1313
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	2 cut(s)	1352, 1718
FaeI	CATG	8 cut(s)	130, 1046, 1091, 1315, 1348, 1480, 1578, 1649
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	8 cut(s)	126, 1042, 1087, 1311, 1344, 1476, 1574, 1645
FauNDI	CATATG	1 cut(s)	959
FblI	GTMKAC	1 cut(s)	1206
FokI	GGATG	6 cut(s)	23, 437, 1081, 1380, 1607, 1611
FriOI	GRGCYC	1 cut(s)	63
FspBI	CTAG	3 cut(s)	80, 570, 788
GlaI	GCGC	6 cut(s)	53, 144, 284, 1454, 1601, 1685
GsuI	CTGGAG	2 cut(s)	260, 403
HaeII	RGCGCY	2 cut(s)	146, 1603
HaeIII	GGCC	3 cut(s)	71, 101, 412
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	1 cut(s)	420
HhaI	GCGC	6 cut(s)	54, 145, 285, 1455, 1602, 1686
Hin1I	GRCGYC	3 cut(s)	27, 357, 431
Hin1II	CATG	8 cut(s)	130, 1046, 1091, 1315, 1348, 1480, 1578, 1649
Hin6I	GCGC	6 cut(s)	52, 143, 283, 1453, 1600, 1684
HinP1I	GCGC	6 cut(s)	52, 143, 283, 1453, 1600, 1684
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	6 cut(s)	331, 388, 824, 1178, 1203, 1292
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	6 cut(s)	147, 529, 604, 866, 898, 1120
Hpy166II	GTNNAC	4 cut(s)	31, 793, 1085, 1207
Hpy188I	TCNGA	3 cut(s)	46, 330, 1105
Hpy188III	TCNNGA	3 cut(s)	335, 349, 450
Hpy8I	GTNNAC	4 cut(s)	31, 793, 1085, 1207
HpyAV	CCTTC	6 cut(s)	112, 298, 304, 662, 846, 937
HpyCH4III	ACNGT	4 cut(s)	326, 1080, 1449, 1460
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 131, 140, 196, 305, 887, 1630
HpyF3I	CTNAG	3 cut(s)	632, 1061, 1104
Hsp92I	GRCGYC	3 cut(s)	27, 357, 431
Hsp92II	CATG	8 cut(s)	130, 1046, 1091, 1315, 1348, 1480, 1578, 1649
HspAI	GCGC	6 cut(s)	52, 143, 283, 1453, 1600, 1684
Kzo9I	GATC	3 cut(s)	351, 903, 1414
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	5 cut(s)	16, 46, 58, 649, 1547
LweI	GCATC	2 cut(s)	73, 1633
MaeI	CTAG	3 cut(s)	80, 570, 788
MaeIII	GTNAC	5 cut(s)	563, 706, 1192, 1322, 1499
MalI	GATC	3 cut(s)	353, 905, 1416
MboI	GATC	3 cut(s)	351, 903, 1414
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	8 cut(s)	546, 777, 818, 875, 1099, 1130, 1170, 1426
MlyI	GAGTC	1 cut(s)	1212
MmeI	TCCRAC	2 cut(s)	195, 308
Mph1103I	ATGCAT	1 cut(s)	1313
MroXI	GAANNNNTTC	1 cut(s)	991
MseI	TTAA	5 cut(s)	675, 861, 873, 1173, 1235
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	5 cut(s)	320, 765, 910, 1303, 1704
MvaI	CCWGG	5 cut(s)	320, 765, 910, 1303, 1704
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	7 cut(s)	58, 131, 140, 196, 305, 887, 1630
NdeI	CATATG	1 cut(s)	959
NdeII	GATC	3 cut(s)	351, 903, 1414
NlaIII	CATG	8 cut(s)	130, 1046, 1091, 1315, 1348, 1480, 1578, 1649
NlaIV	GGNNCC	3 cut(s)	762, 1140, 1350
NmuCI	GTSAC	2 cut(s)	563, 706
NruI	TCGCGA	1 cut(s)	350
NsiI	ATGCAT	1 cut(s)	1313
NspI	RCATGY	2 cut(s)	1046, 1578
PaqCI	CACCTGC	1 cut(s)	1506
PciI	ACATGT	2 cut(s)	1042, 1574
PciSI	GCTCTTC	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	8 cut(s)	201, 276, 285, 354, 428, 440, 443, 1735
PdmI	GAANNNNTTC	1 cut(s)	991
PfeI	GAWTC	5 cut(s)	331, 388, 824, 1178, 1292
PfoI	TCCNGGA	1 cut(s)	763
Ple19I	CGATCG	1 cut(s)	354
PleI	GAGTC	1 cut(s)	1211
PmaCI	CACGTG	1 cut(s)	851
PmlI	CACGTG	1 cut(s)	851
PpsI	GAGTC	1 cut(s)	1211
Ppu21I	YACGTR	2 cut(s)	851, 1679
PpuMI	RGGWCCY	1 cut(s)	316
PscI	ACATGT	2 cut(s)	1042, 1574
PshAI	GACNNNNGTC	1 cut(s)	953
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	5 cut(s)	318, 763, 908, 1301, 1702
PspCI	CACGTG	1 cut(s)	851
PspGI	CCWGG	5 cut(s)	318, 763, 908, 1301, 1702
PspN4I	GGNNCC	3 cut(s)	762, 1140, 1350
PspPI	GGNCC	3 cut(s)	274, 316, 322
PspPPI	RGGWCCY	1 cut(s)	316
PstI	CTGCAG	2 cut(s)	833, 1300
PvuI	CGATCG	1 cut(s)	354
RruI	TCGCGA	1 cut(s)	350
RsaI	GTAC	9 cut(s)	163, 194, 269, 404, 421, 488, 1382, 1677, 1728
RsaNI	GTAC	9 cut(s)	162, 193, 268, 403, 420, 487, 1381, 1676, 1727
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	5 cut(s)	675, 861, 873, 1173, 1235
Sau3AI	GATC	3 cut(s)	351, 903, 1414
Sau96I	GGNCC	3 cut(s)	274, 316, 322
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	1 cut(s)	1212
ScrFI	CCNGG	5 cut(s)	320, 765, 910, 1303, 1704
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	2 cut(s)	73, 1633
SfcI	CTRYAG	3 cut(s)	829, 891, 1296
SinI	GGWCC	3 cut(s)	274, 316, 322
SmiI	ATTTAAAT	1 cut(s)	874
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SpeI	ACTAGT	1 cut(s)	787
Sse9I	AATT	8 cut(s)	546, 777, 818, 875, 1099, 1130, 1170, 1426
SspI	AATATT	2 cut(s)	743, 1114
SspMI	CTAG	3 cut(s)	80, 570, 788
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	5 cut(s)	318, 763, 908, 1301, 1702
StyI	CCWWGG	2 cut(s)	1352, 1718
SwaI	ATTTAAAT	1 cut(s)	874
TaaI	ACNGT	4 cut(s)	326, 1080, 1449, 1460
TaqI	TCGA	5 cut(s)	93, 354, 588, 985, 999
TasI	AATT	8 cut(s)	546, 777, 818, 875, 1099, 1130, 1170, 1426
TatI	WGTACW	3 cut(s)	161, 486, 1380
TauI	GCSGC	3 cut(s)	71, 464, 1624
TfiI	GAWTC	5 cut(s)	331, 388, 824, 1178, 1292
Tru1I	TTAA	5 cut(s)	675, 861, 873, 1173, 1235
Tru9I	TTAA	5 cut(s)	675, 861, 873, 1173, 1235
TscAI	CASTG	3 cut(s)	367, 1085, 1635
TseFI	GTSAC	2 cut(s)	563, 706
Tsp45I	GTSAC	2 cut(s)	563, 706
TspDTI	ATGAA	6 cut(s)	981, 1104, 1140, 1328, 1419, 1725
TspGWI	ACGGA	2 cut(s)	29, 437
TspRI	CASTG	3 cut(s)	367, 1085, 1635
VpaK11BI	GGWCC	3 cut(s)	274, 316, 322
XapI	RAATTY	3 cut(s)	818, 875, 1426
XceI	RCATGY	2 cut(s)	1046, 1578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	1206
XmnI	GAANNNNTTC	1 cut(s)	991
XspI	CTAG	3 cut(s)	80, 570, 788
ZraI	GACGTC	2 cut(s)	28, 358
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	1313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.