Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

67609146 .. 67613786

Gene Structure 4641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG424100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2034 bp

ATGGCCACCCCTGCGTACCGAGACGACCTCCACACCATTCTCTCCGAGCAACGCCGAGAGCTCATGGCCGCCAAAACCCTAGACTCCGACCTCGACATCGCCTTCAGTCTCCAAATGCAGGAAGCCATGACCGCCTCCCTCTCTCAACAGCCCTCGTCTTCGCGCCCTCCTCCGCCTCCGCCGCTCATCCACGACGAATACGACGACGTATTGGACCTCGCCGTCGCGCTCATGCTCGAGGACGTCCAGAAATTCGCGCAGGAATACGACGACCACGAGCGATCCCTCTGCGAAATAAGGCAGGCGAAGGAAGACCTCGACCGTCGGATTCACGATCAGAATTTCGCCGACGAGGTCCGCAACGTCCCGGAGGACTATTGGAGCAAGTACGGCGATTACTACGAGAAGCCGTACTGTGGCGACGGCGCGTCTTCGTCGTCGTCGAAACCGGCGGTGGAGACTGAGTGTTTGAGATTGTATTGCAAGGGTTTGGTTGGTGAAGAGGTGGTTAGGGATTCGAAGGTGGTGGTGGCTGGGGCTGGGGTTGCGATTTGTGACCCTAGAGATAATCTGATATTCGAGGCGAGGAAGAATCTGGAGGCGTTTGATGGTGGTGTGGTGATGAGCAATGAGGCTGTGGAGCTTGAGGCTCTCCTTGAAGGGCTCAATACAGCTCTCACGCTGGACTTGAAAAATGTCACATTTTTCTGTGATGGCTACATGCTTTACCAATACGTTACAGGCAGAGTGCTTCCTGGGAACAGCAAGATTGCAACATTAGTCAATCAATTAGGAGTTCTACGAAGAAAATTTGAATATTGCAGCCCTTCTTTTGTGGCACGTAGTGACATTAAGTTTGCATTTCAATTTGCAAGAGAAGCTATAGTTTCTCAAATAACCTGGCCTGCAGAAACTAGCAGTGGCAAATCTTTGAAGGAGACTTGTGTAATTTGTTTTGAGGACACTGATGTTGGTCGAATGTTTTCAATTGATGGTTGTCTGCACAGGTATTGCTTTTCTTGTATGAAACAGCATGTAGAAGTTAAGTTGCTTAATGGGCAGGTGGCACAGTGCCCTCACGAAGGCTGTAATTCTGAGGTCAATATTGACAGTTGCGTACAATTCCTGGCACCTCAACTAGTTGAGGTTATGAGCCAAAGAATCAAGGAATCTTCTATTCCTGTCACAGAAAAAGTTTATTGCCCAAAACCCAGGTGTTCTGCATTGATGTCCAAAAAGGAGGTCTTGCAATATACAAGCAGCTTTTATGCGGGTGCTGAACAATCTGGAGCCAGGAGATGCATGAAATGTCATTCCTATTTTTGTATCAATTGCAAGGTCCCATGGCATTCGGACATGACATGCTATGATTACAAAAGATCGCATCCCTATCCCCTTGCAGAAGACCAGTTGCTGAAGTCGTTGGCTACAATGAAACACTGGCGTCAGTGTGTTAAGTGCAAGAATATGGTTGAACTCGCAGAAGGTTGTTACCACATTACTTGCAGATGTGGATATGAGTTCTGCTATACTTGCGGAGCTGAATGGAAGGACAAGAAACCAACATGTTCATGCCCAATCTGGGATGTGCGCAACATCATTCGCGAACAGCCACGACAAGTCCAGCCCATTATACGTGAGCAACCACGCCAAGTTCCCCAACAACTGCGGCAGCCCATTATGCCACGGCAGGTGCAGCCTATCAGACTTGAACACCAACGACAAGGCCAGCCCATTAGACATGAACAACGACAAAGATTTCAAGTGCAACAGCCCATTATGCCACAACAAGTACAGCATGTCATACATGAACAGCCACGACAAGGACAGCCTGGACGTGAGCCACCTCAACAACTGCAGCCCAATTTATATCAGCAGCACCGACGTGGACAGCCTGTTGTACTTGAACAGCCACGACAGGCACAGCCCATTAGACGTGAACAGCCACGACAGGTACGGCAACAACAGGATTATGACTACTATGAACAGCCACGACAGGTACGGCGACAAGATGATTACAACTACTATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

677

Amino Acids

78.18

Weight (kDa)

6.41

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	177 - 294	6.3e-19	Reverse transcriptase-like
IBR	PF01485	397 - 455	2e-10	IBR domain, a half RING-finger domain
IBR	PF01485	470 - 523	5.4e-08	IBR domain, a half RING-finger domain
IBR_1	PF22191	482 - 519	3.7e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1051, 1681
AasI	GACNNNNNNGTC	1 cut(s)	221
AatII	GACGTC	1 cut(s)	246
Acc16I	TGCGCA	1 cut(s)	1592
Acc36I	ACCTGC	2 cut(s)	1051, 1681
AccB1I	GGYRCC	1 cut(s)	1129
AccBSI	CCGCTC	1 cut(s)	184
AccII	CGCG	5 cut(s)	163, 227, 257, 428, 1605
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	2 cut(s)	3, 66
AcsI	RAATTY	3 cut(s)	251, 340, 809
AcuI	CTGAAG	2 cut(s)	88, 1436
AcyI	GRCGYC	2 cut(s)	243, 1444
AdeI	CACNNNGTG	1 cut(s)	845
AfaI	GTAC	8 cut(s)	17, 389, 413, 1119, 1794, 1902, 1956, 2001
AfiI	CCNNNNNNNGG	5 cut(s)	118, 416, 1082, 1582, 1823
AflIII	ACRYGT	1 cut(s)	1565
AhdI	GACNNNNNGTC	1 cut(s)	427
AhlI	ACTAGT	1 cut(s)	1138
AjiI	CACGTC	3 cut(s)	1838, 1886, 1937
AjnI	CCWGG	6 cut(s)	754, 899, 1125, 1211, 1292, 1831
AleI	CACNNNNGTG	1 cut(s)	1884
AluBI	AGCT	6 cut(s)	61, 643, 674, 881, 1263, 1541
AluI	AGCT	6 cut(s)	61, 643, 674, 881, 1263, 1541
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	4 cut(s)	15, 113, 452, 932
AlwI	GGATC	1 cut(s)	276
AlwNI	CAGNNNCTG	1 cut(s)	1414
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	4 cut(s)	3, 66, 902, 1726
ApeKI	GCWGC	6 cut(s)	822, 1260, 1672, 1696, 1858, 1876
ApoI	RAATTY	3 cut(s)	251, 340, 809
ArsI	GACNNNNNNTTYG	6 cut(s)	451, 483, 839, 871, 1227, 1259
Asp700I	GAANNNNTTC	1 cut(s)	982
AspLEI	GCGC	5 cut(s)	165, 229, 259, 428, 1593
AspS9I	GGNCC	3 cut(s)	214, 355, 1339
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	2 cut(s)	509, 631
AsuII	TTCGAA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	3 cut(s)	214, 355, 1339
BaeGI	GKGCMC	1 cut(s)	1076
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	1129
BanII	GRGCYC	2 cut(s)	63, 666
BauI	CACGAG	1 cut(s)	275
BbsI	GAAGAC	4 cut(s)	150, 318, 423, 1410
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	6 cut(s)	834, 1272, 1684, 1708, 1870, 1888
BccI	CCATC	3 cut(s)	602, 707, 986
BceAI	ACGGC	7 cut(s)	206, 394, 406, 439, 1703, 1973, 2018
BcgI	CGANNNNNNTGC	2 cut(s)	270, 304
BciT130I	CCWGG	6 cut(s)	756, 901, 1127, 1213, 1294, 1833
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	4 cut(s)	15, 113, 452, 932
BcuI	ACTAGT	1 cut(s)	1138
BfaI	CTAG	5 cut(s)	80, 561, 915, 1139, 2032
BfmI	CTRYAG	3 cut(s)	882, 906, 1856
BfuAI	ACCTGC	2 cut(s)	1051, 1681
BisI	GCNGC	9 cut(s)	69, 182, 823, 1261, 1670, 1673, 1697, 1859, 1877
BlsI	GCNGC	9 cut(s)	70, 183, 824, 1262, 1671, 1674, 1698, 1860, 1878
Bme1390I	CCNGG	7 cut(s)	368, 756, 901, 1127, 1213, 1294, 1833
Bme18I	GGWCC	3 cut(s)	214, 355, 1339
BmeRI	GACNNNNNGTC	1 cut(s)	427
BmeT110I	CYCGRG	1 cut(s)	236
BmgBI	CACGTC	3 cut(s)	1838, 1886, 1937
BmgT120I	GGNCC	3 cut(s)	214, 355, 1339
BmiI	GGNNCC	3 cut(s)	1131, 1291, 1341
BmrFI	CCNGG	7 cut(s)	368, 756, 901, 1127, 1213, 1294, 1833
BmsI	GCATC	2 cut(s)	1289, 1393
BpiI	GAAGAC	4 cut(s)	150, 318, 423, 1410
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpmI	CTGGAG	2 cut(s)	617, 1308
Bpu14I	TTCGAA	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	368
BsaAI	YACGTR	2 cut(s)	842, 1637
BsaHI	GRCGYC	2 cut(s)	243, 1444
BsaJI	CCNNGG	4 cut(s)	755, 1211, 1343, 1685
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 416, 1082, 1582, 1823
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	2 cut(s)	1408, 1445
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	6 cut(s)	756, 901, 1127, 1213, 1294, 1833
BseDI	CCNNGG	4 cut(s)	755, 1211, 1343, 1685
BseGI	GGATG	3 cut(s)	186, 1384, 1591
BseLI	CCNNNNNNNGG	5 cut(s)	118, 416, 1082, 1582, 1823
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	2 cut(s)	453, 1086
BseNI	ACTGG	2 cut(s)	1408, 1445
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	1076
BseXI	GCAGC	6 cut(s)	834, 1272, 1684, 1708, 1870, 1888
BseYI	CCCAGC	2 cut(s)	533, 539
BsgI	GTGCAG	2 cut(s)	986, 1715
Bsh1236I	CGCG	5 cut(s)	163, 227, 257, 428, 1605
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	4 cut(s)	5, 68, 904, 1728
BshNI	GGYRCC	1 cut(s)	1129
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	368, 449
BslFI	GGGAC	2 cut(s)	350, 1325
BslI	CCNNNNNNNGG	5 cut(s)	118, 416, 1082, 1582, 1823
BsmAI	GTCTC	4 cut(s)	15, 113, 452, 932
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	2 cut(s)	350, 1325
BsmI	GAATGC	1 cut(s)	1348
BsnI	GGCC	4 cut(s)	5, 68, 904, 1728
BsoBI	CYCGRG	1 cut(s)	236
Bsp119I	TTCGAA	1 cut(s)	518
Bsp1286I	GDGCHC	3 cut(s)	63, 666, 1076
Bsp143I	GATC	3 cut(s)	281, 334, 1379
Bsp19I	CCATGG	1 cut(s)	1343
Bsp68I	TCGCGA	1 cut(s)	1605
BspANI	GGCC	4 cut(s)	5, 68, 904, 1728
BspCNI	CTCAG	2 cut(s)	454, 1087
BspFNI	CGCG	5 cut(s)	163, 227, 257, 428, 1605
BspLI	GGNNCC	3 cut(s)	1131, 1291, 1341
BspMAI	CTGCAG	2 cut(s)	910, 1860
BspMI	ACCTGC	2 cut(s)	1051, 1681
BspPI	GGATC	1 cut(s)	276
BspT104I	TTCGAA	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	1129
BsrBI	CCGCTC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	634
BsrFI	RCCGGY	1 cut(s)	448
BsrI	ACTGG	2 cut(s)	1408, 1445
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	4 cut(s)	755, 1211, 1343, 1685
BssMI	GATC	3 cut(s)	281, 334, 1379
BssNI	GRCGYC	2 cut(s)	243, 1444
BssSI	CACGAG	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	1343
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	6 cut(s)	756, 901, 1127, 1213, 1294, 1833
Bst4CI	ACNGT	4 cut(s)	323, 416, 1071, 1112
Bst6I	CTCTTC	1 cut(s)	495
BstACI	GRCGYC	2 cut(s)	243, 1444
BstBAI	YACGTR	2 cut(s)	842, 1637
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	303, 906, 1730
BstDEI	CTNAG	2 cut(s)	462, 1095
BstDSI	CCRYGG	2 cut(s)	1343, 1685
BstENI	CCTNNNNNAGG	1 cut(s)	1080
BstF5I	GGATG	3 cut(s)	186, 1384, 1591
BstFNI	CGCG	5 cut(s)	163, 227, 257, 428, 1605
BstHHI	GCGC	5 cut(s)	165, 229, 259, 428, 1593
BstKTI	GATC	3 cut(s)	284, 337, 1382
BstMAI	GTCTC	4 cut(s)	15, 113, 452, 932
BstMBI	GATC	3 cut(s)	281, 334, 1379
BstMCI	CGRYCG	1 cut(s)	322
BstNI	CCWGG	6 cut(s)	756, 901, 1127, 1213, 1294, 1833
BstNSI	RCATGY	5 cut(s)	724, 1037, 1365, 1569, 1802
BstSCI	CCNGG	7 cut(s)	366, 754, 899, 1125, 1211, 1292, 1831
BstSFI	CTRYAG	3 cut(s)	882, 906, 1856
BstSLI	GKGCMC	1 cut(s)	1076
BstUI	CGCG	5 cut(s)	163, 227, 257, 428, 1605
BstV1I	GCAGC	6 cut(s)	834, 1272, 1684, 1708, 1870, 1888
BstV2I	GAAGAC	4 cut(s)	150, 318, 423, 1410
BsuRI	GGCC	4 cut(s)	5, 68, 904, 1728
BtgI	CCRYGG	2 cut(s)	1343, 1685
BtgZI	GCGATG	1 cut(s)	82
BtrI	CACGTC	3 cut(s)	1838, 1886, 1937
BtsCI	GGATG	3 cut(s)	186, 1384, 1591
BtsI	GCAGTG	1 cut(s)	925
BtsIMutI	CAGTG	5 cut(s)	925, 963, 1076, 1438, 1454
BtuMI	TCGCGA	1 cut(s)	1605
BveI	ACCTGC	2 cut(s)	1051, 1681
Cac8I	GCNNGC	3 cut(s)	303, 906, 1730
CaiI	CAGNNNCTG	1 cut(s)	1414
CfoI	GCGC	5 cut(s)	165, 229, 259, 428, 1593
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	3 cut(s)	214, 355, 1339
CseI	GACGC	2 cut(s)	417, 1433
Csp6I	GTAC	8 cut(s)	16, 388, 412, 1118, 1793, 1901, 1955, 2000
CspCI	CAANNNNNGTGG	2 cut(s)	1484, 1519
CviQI	GTAC	8 cut(s)	16, 388, 412, 1118, 1793, 1901, 1955, 2000
DdeI	CTNAG	2 cut(s)	462, 1095
DpnI	GATC	3 cut(s)	283, 336, 1381
DpnII	GATC	3 cut(s)	281, 334, 1379
DraIII	CACNNNGTG	1 cut(s)	845
DrdI	GACNNNNNNGTC	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	427
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	3, 66
Eam1104I	CTCTTC	1 cut(s)	495
Eam1105I	GACNNNNNGTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	2 cut(s)	162, 168
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	1343
Eco24I	GRGCYC	2 cut(s)	63, 666
Eco47I	GGWCC	3 cut(s)	214, 355, 1339
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	88, 1436
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	1080
EcoO109I	RGGNCCY	1 cut(s)	1339
EcoRII	CCWGG	6 cut(s)	754, 899, 1125, 1211, 1292, 1831
EcoT14I	CCWWGG	1 cut(s)	1343
EcoT22I	ATGCAT	1 cut(s)	1304
EcoT38I	GRGCYC	2 cut(s)	63, 666
ErhI	CCWWGG	1 cut(s)	1343
Esp3I	CGTCTC	1 cut(s)	15
FalI	AAGNNNNNCTT	2 cut(s)	1229, 1261
FaqI	GGGAC	2 cut(s)	350, 1325
FauI	CCCGC	1 cut(s)	1264
Fnu4HI	GCNGC	9 cut(s)	69, 182, 823, 1261, 1670, 1673, 1697, 1859, 1877
FokI	GGATG	3 cut(s)	173, 1371, 1598
FriOI	GRGCYC	2 cut(s)	63, 666
Fsp4HI	GCNGC	9 cut(s)	69, 182, 823, 1261, 1670, 1673, 1697, 1859, 1877
FspBI	CTAG	5 cut(s)	80, 561, 915, 1139, 2032
FspI	TGCGCA	1 cut(s)	1592
GlaI	GCGC	5 cut(s)	164, 228, 258, 427, 1592
GluI	GCNGC	9 cut(s)	69, 182, 823, 1261, 1670, 1673, 1697, 1859, 1877
GsaI	CCCAGC	2 cut(s)	537, 543
GsuI	CTGGAG	2 cut(s)	617, 1308
HaeIII	GGCC	4 cut(s)	5, 68, 904, 1728
HapII	CCGG	2 cut(s)	368, 449
HgaI	GACGC	2 cut(s)	417, 1433
HhaI	GCGC	5 cut(s)	165, 229, 259, 428, 1593
Hin1I	GRCGYC	2 cut(s)	243, 1444
Hin6I	GCGC	5 cut(s)	163, 227, 257, 426, 1591
HinP1I	GCGC	5 cut(s)	163, 227, 257, 426, 1591
HinfI	GANTC	6 cut(s)	83, 328, 515, 592, 1161, 1169
HpaII	CCGG	2 cut(s)	368, 449
HphI	GGTGA	2 cut(s)	509, 631
Hpy166II	GTNNAC	2 cut(s)	1889, 1940
Hpy188I	TCNGA	8 cut(s)	46, 88, 327, 339, 573, 1096, 1354, 1706
Hpy188III	TCNNGA	6 cut(s)	247, 332, 596, 1079, 1287, 1604
Hpy8I	GTNNAC	2 cut(s)	1889, 1940
HpyAV	CCTTC	9 cut(s)	112, 301, 514, 653, 837, 928, 1076, 1478, 1543
HpyCH4III	ACNGT	4 cut(s)	323, 416, 1071, 1112
HpyCH4IV	ACGT	9 cut(s)	207, 243, 363, 735, 841, 1636, 1837, 1885, 1936
HpyF3I	CTNAG	2 cut(s)	462, 1095
HpySE526I	ACGT	9 cut(s)	207, 243, 363, 735, 841, 1636, 1837, 1885, 1936
Hsp92I	GRCGYC	2 cut(s)	243, 1444
HspAI	GCGC	5 cut(s)	163, 227, 257, 426, 1591
Kzo9I	GATC	3 cut(s)	281, 334, 1379
LmnI	GCTCC	4 cut(s)	381, 640, 1289, 1538
Lsp1109I	GCAGC	6 cut(s)	834, 1272, 1684, 1708, 1870, 1888
LweI	GCATC	2 cut(s)	1289, 1393
MaeI	CTAG	5 cut(s)	80, 561, 915, 1139, 2032
MaeII	ACGT	9 cut(s)	207, 243, 363, 735, 841, 1636, 1837, 1885, 1936
MaeIII	GTNAC	6 cut(s)	554, 697, 736, 845, 1183, 1490
MalI	GATC	3 cut(s)	283, 336, 1381
MbiI	CCGCTC	1 cut(s)	184
MboI	GATC	3 cut(s)	281, 334, 1379
MboII	GAAGA	8 cut(s)	150, 323, 423, 512, 601, 816, 1164, 1415
MfeI	CAATTG	2 cut(s)	987, 1330
MhlI	GDGCHC	3 cut(s)	63, 666, 1076
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	111, 305
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1304
MroXI	GAANNNNTTC	1 cut(s)	982
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	852, 1044, 1053, 1455
MslI	CAYNNNNRTG	2 cut(s)	1570, 1884
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	368, 449
MspR9I	CCNGG	7 cut(s)	368, 756, 901, 1127, 1213, 1294, 1833
MunI	CAATTG	2 cut(s)	987, 1330
Mva1269I	GAATGC	1 cut(s)	1348
MvaI	CCWGG	6 cut(s)	756, 901, 1127, 1213, 1294, 1833
MvnI	CGCG	5 cut(s)	163, 227, 257, 428, 1605
NciI	CCSGG	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	1343
NdeII	GATC	3 cut(s)	281, 334, 1379
NlaIV	GGNNCC	3 cut(s)	1131, 1291, 1341
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	4 cut(s)	554, 697, 845, 1183
NruI	TCGCGA	1 cut(s)	1605
NsbI	TGCGCA	1 cut(s)	1592
NsiI	ATGCAT	1 cut(s)	1304
NspI	RCATGY	5 cut(s)	724, 1037, 1365, 1569, 1802
NspV	TTCGAA	1 cut(s)	518
OliI	CACNNNNGTG	1 cut(s)	1884
PaeR7I	CTCGAG	1 cut(s)	236
PaqCI	CACCTGC	2 cut(s)	1051, 1681
PciI	ACATGT	1 cut(s)	1565
PcsI	WCGNNNNNNNCGW	4 cut(s)	198, 201, 273, 440
PctI	GAATGC	1 cut(s)	1348
PdmI	GAANNNNTTC	1 cut(s)	982
PfeI	GAWTC	5 cut(s)	328, 515, 592, 1161, 1169
PflFI	GACNNNGTC	1 cut(s)	353
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	9 cut(s)	70, 183, 824, 1262, 1671, 1674, 1698, 1860, 1878
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	2 cut(s)	842, 1637
PpuMI	RGGWCCY	1 cut(s)	1339
PscI	ACATGT	1 cut(s)	1565
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	1339
Psp6I	CCWGG	6 cut(s)	754, 899, 1125, 1211, 1292, 1831
PspFI	CCCAGC	2 cut(s)	533, 539
PspGI	CCWGG	6 cut(s)	754, 899, 1125, 1211, 1292, 1831
PspN4I	GGNNCC	3 cut(s)	1131, 1291, 1341
PspPI	GGNCC	3 cut(s)	214, 355, 1339
PspPPI	RGGWCCY	1 cut(s)	1339
PspXI	VCTCGAGB	1 cut(s)	236
PstI	CTGCAG	2 cut(s)	910, 1860
PstNI	CAGNNNCTG	1 cut(s)	1414
PsyI	GACNNNGTC	1 cut(s)	353
RruI	TCGCGA	1 cut(s)	1605
RsaI	GTAC	8 cut(s)	17, 389, 413, 1119, 1794, 1902, 1956, 2001
RsaNI	GTAC	8 cut(s)	16, 388, 412, 1118, 1793, 1901, 1955, 2000
RseI	CAYNNNNRTG	2 cut(s)	1570, 1884
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	4 cut(s)	852, 1044, 1053, 1455
SatI	GCNGC	9 cut(s)	69, 182, 823, 1261, 1670, 1673, 1697, 1859, 1877
Sau3AI	GATC	3 cut(s)	281, 334, 1379
Sau96I	GGNCC	3 cut(s)	214, 355, 1339
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	7 cut(s)	368, 756, 901, 1127, 1213, 1294, 1833
SduI	GDGCHC	3 cut(s)	63, 666, 1076
SfaNI	GCATC	2 cut(s)	1289, 1393
SfcI	CTRYAG	3 cut(s)	882, 906, 1856
Sfr274I	CTCGAG	1 cut(s)	236
SfuI	TTCGAA	1 cut(s)	518
SinI	GGWCC	3 cut(s)	214, 355, 1339
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	1570, 1884
SmlI	CTYRAG	2 cut(s)	236, 644
SmoI	CTYRAG	2 cut(s)	236, 644
SpeI	ACTAGT	1 cut(s)	1138
SspI	AATATT	2 cut(s)	818, 1105
SspMI	CTAG	5 cut(s)	80, 561, 915, 1139, 2032
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	7 cut(s)	366, 754, 899, 1125, 1211, 1292, 1831
StyI	CCWWGG	1 cut(s)	1343
TaaI	ACNGT	4 cut(s)	323, 416, 1071, 1112
TaiI	ACGT	9 cut(s)	210, 246, 366, 738, 844, 1639, 1840, 1888, 1939
TaqI	TCGA	7 cut(s)	93, 237, 318, 443, 518, 579, 976
TatI	WGTACW	2 cut(s)	1792, 1900
TauI	GCSGC	3 cut(s)	71, 184, 1672
TfiI	GAWTC	5 cut(s)	328, 515, 592, 1161, 1169
Tru1I	TTAA	4 cut(s)	852, 1044, 1053, 1455
Tru9I	TTAA	4 cut(s)	852, 1044, 1053, 1455
TscAI	CASTG	5 cut(s)	925, 970, 1076, 1445, 1454
TseFI	GTSAC	4 cut(s)	554, 697, 845, 1183
TseI	GCWGC	6 cut(s)	822, 1260, 1672, 1696, 1858, 1876
Tsp45I	GTSAC	4 cut(s)	554, 697, 845, 1183
TspDTI	ATGAA	7 cut(s)	1040, 1319, 1448, 1560, 1758, 1824, 1998
TspRI	CASTG	5 cut(s)	925, 970, 1076, 1445, 1454
Tth111I	GACNNNGTC	1 cut(s)	353
VpaK11BI	GGWCC	3 cut(s)	214, 355, 1339
XagI	CCTNNNNNAGG	1 cut(s)	1080
XapI	RAATTY	3 cut(s)	251, 340, 809
XceI	RCATGY	5 cut(s)	724, 1037, 1365, 1569, 1802
XhoI	CTCGAG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	982
XspI	CTAG	5 cut(s)	80, 561, 915, 1139, 2032
ZraI	GACGTC	1 cut(s)	244
Zsp2I	ATGCAT	1 cut(s)	1304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.