Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

11581010 .. 11585019

Gene Structure 4010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1125700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

ATGGCCACCGGAGTCTCACCCGAAGACGACGACGTATTCGTCTCGGTCTCCGAGCAACGCCGCGAGTTCATGGAAGCCAAAGCCTTAGAGTCCGACATGGATCTCGCCTTCCACCTCCAACTCCAAGAGGCCCTTGCTGCCTCCCTCACCCTCCAACCCTCCTCCTCCTCCGCCCAATCCCTGGAAAAAGACGCCGTTCCGATCATCCCCGACACTCCAACTGTCGTCTCCATCCAGTCCGGCGAACTCGCGAGGCTGGAGCAGGAATTGAAAGACCGTGAGCAGAGCGAGATCGAAATGCGGAAAGCCAGAGAGGATCTCGAGCGTCGGATTCACGACGATCAGGTCGCGAGGGAGATCATGAGGATTCCGGAGGAGGAGTGGGAGGAGTCCGGCGAATTCTTCTCCATGCCGTTCGGCGAAGGATCATCCTCTTATTCAGCTTCGGCGAAGAGCGTCGAGAGCGAGAGCGTATTCAGGCTATACTTCAAGGGTTTGGTGAGCGAGGAAAGGGTTGGGAAGGAGAGGGCGGCACTGGCAGGAATTGGGGCGGCGCTGTGCGATCCGAGGGACAATTTGTTGTTCGAGGTCAGGAAGCCGCTGATTGGGAGCGGGACGAGCAGCAGTGGGGCCCAGTTGAAGGCCTTGATCGAAGGGCTGAATGCTGCTCTTGCTTTGGATTTGAAGCGCCTCACCTTCTTCTGTGAGAATCGCCACATTTTCCAGTTTATAACTGGTAAATGGACAGCAAAGCAGCGCAAGGTAGCAATGCTTGTCAGTCAGGTTAAGAGCCTTCAAGCAAAGTTTACAGTTTGCAATCCAATTCTTGTGCCCCGATTTGATATTAAATTTGCATTTAAACTAGCAAGAGATGCAATAGATTCTCAGTCTCAGACTAACCAGCCTGCACAATCTATCACTTCCAAGAATGTGAATGAGACTTGCGTGATATGTTTGGAAGCTACTGATGTTAACCAAATGTTTTCAGTTGATGGCTGTCTGCATCGGTATTGCTTTTCTTGTATGAAACAACATGTAGAGGTGAAGTTGCTTCATGGGATGATTCCTAGATGCCCTCATGAAGACTGTAAGTCTGATCTTACTGTTGATAGTTGTGCAAAATTCTTGACACCTAAACATGTGGAGACTATGCGCCAACGCATAAAGGAAGCTTCAATTCCTGCCACAGAGAAAGTTTATTGCCCGTACCCGAGGTGCTCCGCTTTAATGTCAAAACGTGAACTTTTACAAGACATGAAATCGCGGGATGTGGAACTATCAGGAGTTCGAAAATGCTTGAAATGTCAGTGCCTTTTTTGTATCAATTGTAAAGTCCCTTGGCACAGAAACAGAACATGCGCCGACTACAAAAGGTTGAATCCTCATCCCCCAGAAGATACAAAGCTAAAGTCCCTTGCCTCAACGAATCTGTGGCGCCAGTGTGTGAAGTGCAACCATATGATTGAACTTGCTGAAGGTTGCTACCACATGACTTGCAGGTGTGGGCATGAGTTTTGTTATAATTGTGGAGGCGAGTGGAAAGACAAAAAGGCAACATGCTCATGCCCACTATGGGATGAGGGTAATATTTTGCATGATGAAGATGATGAAGATTTTGATTTTGATGAAGAGGATGTGTCAGAGTCAGATTCCGAGGGACATGCTCCTGGGTTTTGCAATGACTGTGGACAGTCTACAGACTACACAGGAGCATGTTTACACCCAGTTTTGTTTGAAGATGATATCTTATTTGACGGAGATAGTGATACTCAGGAGTTGAAAAAAGATGAATATGAAGGTGAAGTTAAGGATGACGGCCTAGAAGAAGACGGATATGAAGATGAAATCGGGCAGGAGGTTCAGGAAGAGATGCATATCTTGCCTGCTGTAGATGGTAGAGATCTTGATGAAGAAATTGACGAAGATGAGGAGTTCTGTGACTCTGACTGCGAATGCTATGAAGATGAGGTTCATGAGAAAGAGGTTCGAGAGGACGTTCAGGAAGAATGGTTGGAGCAAGGTCAGGTGGATGAGAACTTCTATGCGGAAAATGATACAGATTTTGGTGACGAATATGAGGAAGATGAAGAGGAGTGCTGTGACTCTGACTGCGGCCGCGACTGTGACTGCTACGACTCTAACTCAGATTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

719

Amino Acids

81.59

Weight (kDa)

4.49

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	175 - 292	2e-23	Reverse transcriptase-like
IBR	PF01485	395 - 453	4.7e-09	IBR domain, a half RING-finger domain
IBR	PF01485	468 - 520	1.3e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	480 - 517	8.6e-08	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	731, 1521
AarI	CACCTGC	1 cut(s)	1488
AasI	GACNNNNNNGTC	2 cut(s)	38, 344
Acc36I	ACCTGC	1 cut(s)	1488
AccB1I	GGYRCC	1 cut(s)	1434
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccBSI	CCGCTC	1 cut(s)	612
AccI	GTMKAC	1 cut(s)	1694
AccII	CGCG	5 cut(s)	63, 251, 350, 1264, 2118
AccIII	TCCGGA	1 cut(s)	370
AclWI	GGATC	4 cut(s)	108, 324, 433, 557
AcoI	YGGCCR	2 cut(s)	3, 2113
AcsI	RAATTY	3 cut(s)	398, 848, 1121
AcuI	CTGAAG	1 cut(s)	1494
AcyI	GRCGYC	2 cut(s)	192, 1435
AfaI	GTAC	1 cut(s)	1208
AfiI	CCNNNNNNNGG	4 cut(s)	181, 605, 640, 1573
AflIII	ACRYGT	2 cut(s)	1033, 1138
AhdI	GACNNNNNGTC	1 cut(s)	1090
AjnI	CCWGG	2 cut(s)	180, 1666
AluBI	AGCT	4 cut(s)	443, 962, 1172, 1405
AluI	AGCT	4 cut(s)	443, 962, 1172, 1405
Alw21I	GWGCWC	1 cut(s)	1220
Alw26I	GTCTC	7 cut(s)	19, 46, 52, 232, 894, 932, 1139
AlwI	GGATC	4 cut(s)	108, 324, 433, 557
Ama87I	CYCGRG	2 cut(s)	320, 1210
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	6 cut(s)	3, 129, 630, 642, 1816, 2113
ApaI	GGGCCC	1 cut(s)	634
ApeKI	GCWGC	4 cut(s)	137, 621, 665, 754
ApoI	RAATTY	3 cut(s)	398, 848, 1121
ArsI	GACNNNNNNTTYG	4 cut(s)	20, 52, 1394, 1426
AspLEI	GCGC	6 cut(s)	556, 690, 759, 1155, 1361, 1437
AspS9I	GGNCC	3 cut(s)	130, 630, 631
AsuHPI	GGTGA	7 cut(s)	9, 139, 511, 685, 1054, 1811, 2078
AsuII	TTCGAA	1 cut(s)	1288
AvaI	CYCGRG	2 cut(s)	320, 1210
BaeGI	GKGCMC	2 cut(s)	634, 834
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	1434
BanII	GRGCYC	1 cut(s)	634
BbsI	GAAGAC	3 cut(s)	30, 1089, 1833
Bbv12I	GWGCWC	1 cut(s)	1220
BbvI	GCAGC	4 cut(s)	124, 633, 652, 766
BccI	CCATC	3 cut(s)	239, 986, 1886
BceAI	ACGGC	3 cut(s)	179, 397, 1831
BcgI	CGANNNNNNTGC	2 cut(s)	1643, 1677
BciT130I	CCWGG	2 cut(s)	182, 1668
BcoDI	GTCTC	7 cut(s)	19, 46, 52, 232, 894, 932, 1139
BfaI	CTAG	3 cut(s)	863, 1068, 1820
BfmI	CTRYAG	2 cut(s)	1695, 1887
BfoI	RGCGCY	3 cut(s)	557, 691, 1438
BfuAI	ACCTGC	1 cut(s)	1488
BglII	AGATCT	1 cut(s)	1900
Bme1390I	CCNGG	2 cut(s)	182, 1668
BmeRI	GACNNNNNGTC	1 cut(s)	1090
BmeT110I	CYCGRG	2 cut(s)	320, 1210
BmgT120I	GGNCC	3 cut(s)	130, 630, 631
BmiI	GGNNCC	3 cut(s)	631, 632, 1436
BmrFI	CCNGG	2 cut(s)	182, 1668
BmrI	ACTGGG	2 cut(s)	628, 1718
BmsI	GCATC	4 cut(s)	862, 1012, 1061, 1860
BmuI	ACTGGG	2 cut(s)	628, 1718
BpiI	GAAGAC	3 cut(s)	30, 1089, 1833
BplI	GAGNNNNNCTC	2 cut(s)	303, 335
BpmI	CTGGAG	1 cut(s)	278
Bpu14I	TTCGAA	1 cut(s)	1288
BsaBI	GATNNNNATC	1 cut(s)	1874
BsaHI	GRCGYC	2 cut(s)	192, 1435
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	6 cut(s)	180, 566, 1211, 1337, 1653, 1667
BsaWI	WCCGGW	2 cut(s)	8, 370
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 605, 640, 1573
Bse1I	ACTGG	7 cut(s)	235, 540, 634, 724, 739, 1438, 1724
Bse3DI	GCAATG	2 cut(s)	774, 1684
Bse8I	GATNNNNATC	1 cut(s)	1874
BseAI	TCCGGA	1 cut(s)	370
BseBI	CCWGG	2 cut(s)	182, 1668
BseDI	CCNNGG	6 cut(s)	180, 566, 1211, 1337, 1653, 1667
BseJI	GATNNNNATC	1 cut(s)	1874
BseLI	CCNNNNNNNGG	4 cut(s)	181, 605, 640, 1573
BseMI	GCAATG	2 cut(s)	774, 1684
BseMII	CTCAG	4 cut(s)	899, 905, 1784, 2157
BseNI	ACTGG	7 cut(s)	235, 540, 634, 724, 739, 1438, 1724
BseRI	GAGGAG	8 cut(s)	151, 154, 157, 389, 392, 401, 1943, 2105
BseSI	GKGCMC	2 cut(s)	634, 834
BseX3I	CGGCCG	1 cut(s)	2113
BseXI	GCAGC	4 cut(s)	124, 633, 652, 766
BsgI	GTGCAG	1 cut(s)	891
Bsh1236I	CGCG	5 cut(s)	63, 251, 350, 1264, 2118
Bsh1285I	CGRYCG	1 cut(s)	2116
BshFI	GGCC	6 cut(s)	5, 131, 632, 644, 1818, 2115
BshNI	GGYRCC	1 cut(s)	1434
BsiEI	CGRYCG	1 cut(s)	2116
BsiHKAI	GWGCWC	1 cut(s)	1220
BsiHKCI	CYCGRG	2 cut(s)	320, 1210
BsiSI	CCGG	4 cut(s)	9, 240, 371, 393
BslFI	GGGAC	5 cut(s)	584, 628, 1319, 1396, 1671
BslI	CCNNNNNNNGG	4 cut(s)	181, 605, 640, 1573
BsmAI	GTCTC	7 cut(s)	19, 46, 52, 232, 894, 932, 1139
BsmBI	CGTCTC	2 cut(s)	46, 232
BsmFI	GGGAC	5 cut(s)	584, 628, 1319, 1396, 1671
BsmI	GAATGC	2 cut(s)	667, 1958
BsnI	GGCC	6 cut(s)	5, 131, 632, 644, 1818, 2115
Bso31I	GGTCTC	1 cut(s)	52
BsoBI	CYCGRG	2 cut(s)	320, 1210
Bsp119I	TTCGAA	1 cut(s)	1288
Bsp120I	GGGCCC	1 cut(s)	630
Bsp1286I	GDGCHC	3 cut(s)	634, 834, 1220
Bsp13I	TCCGGA	1 cut(s)	370
Bsp68I	TCGCGA	2 cut(s)	251, 350
BspANI	GGCC	6 cut(s)	5, 131, 632, 644, 1818, 2115
BspCNI	CTCAG	4 cut(s)	898, 904, 1783, 2156
BspEI	TCCGGA	1 cut(s)	370
BspFNI	CGCG	5 cut(s)	63, 251, 350, 1264, 2118
BspHI	TCATGA	3 cut(s)	360, 1078, 1972
BspLI	GGNNCC	3 cut(s)	631, 632, 1436
BspMI	ACCTGC	1 cut(s)	1488
BspPI	GGATC	4 cut(s)	108, 324, 433, 557
BspQI	GCTCTTC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	1288
BspT107I	GGYRCC	1 cut(s)	1434
BspTNI	GGTCTC	1 cut(s)	52
BsrBI	CCGCTC	1 cut(s)	612
BsrDI	GCAATG	2 cut(s)	774, 1684
BsrI	ACTGG	7 cut(s)	235, 540, 634, 724, 739, 1438, 1724
BssECI	CCNNGG	6 cut(s)	180, 566, 1211, 1337, 1653, 1667
BssNI	GRCGYC	2 cut(s)	192, 1435
BssT1I	CCWWGG	1 cut(s)	1337
Bst2UI	CCWGG	2 cut(s)	182, 1668
Bst4CI	ACNGT	8 cut(s)	223, 278, 811, 1088, 1105, 1685, 1692, 2123
Bst6I	CTCTTC	4 cut(s)	446, 1623, 1860, 2082
BstACI	GRCGYC	2 cut(s)	192, 1435
BstAPI	GCANNNNNTGC	2 cut(s)	872, 1879
BstBI	TTCGAA	1 cut(s)	1288
BstC8I	GCNNGC	2 cut(s)	906, 1884
BstDEI	CTNAG	5 cut(s)	85, 885, 891, 1770, 2143
BstFNI	CGCG	5 cut(s)	63, 251, 350, 1264, 2118
BstH2I	RGCGCY	3 cut(s)	557, 691, 1438
BstHHI	GCGC	6 cut(s)	556, 690, 759, 1155, 1361, 1437
BstMAI	GTCTC	7 cut(s)	19, 46, 52, 232, 894, 932, 1139
BstMCI	CGRYCG	1 cut(s)	2116
BstMWI	GCNNNNNNNGC	7 cut(s)	137, 462, 536, 618, 671, 872, 1879
BstNI	CCWGG	2 cut(s)	182, 1668
BstNSI	RCATGY	6 cut(s)	1037, 1142, 1359, 1560, 1664, 1716
BstSCI	CCNGG	2 cut(s)	180, 1666
BstSFI	CTRYAG	2 cut(s)	1695, 1887
BstSLI	GKGCMC	2 cut(s)	634, 834
BstUI	CGCG	5 cut(s)	63, 251, 350, 1264, 2118
BstV1I	GCAGC	4 cut(s)	124, 633, 652, 766
BstV2I	GAAGAC	3 cut(s)	30, 1089, 1833
BstX2I	RGATCY	3 cut(s)	100, 316, 1900
BstYI	RGATCY	3 cut(s)	100, 316, 1900
BstZI	CGGCCG	1 cut(s)	2113
BsuRI	GGCC	6 cut(s)	5, 131, 632, 644, 1818, 2115
BtsI	GCAGTG	1 cut(s)	631
BtsIMutI	CAGTG	4 cut(s)	533, 631, 1313, 1445
BtuMI	TCGCGA	2 cut(s)	251, 350
BveI	ACCTGC	1 cut(s)	1488
Cac8I	GCNNGC	2 cut(s)	906, 1884
CciI	TCATGA	3 cut(s)	360, 1078, 1972
CciNI	GCGGCCGC	1 cut(s)	2113
CfoI	GCGC	6 cut(s)	556, 690, 759, 1155, 1361, 1437
Cfr13I	GGNCC	3 cut(s)	130, 630, 631
CseI	GACGC	3 cut(s)	200, 314, 445
Csp6I	GTAC	1 cut(s)	1207
CspCI	CAANNNNNGTGG	4 cut(s)	1475, 1510, 1666, 1701
CviQI	GTAC	1 cut(s)	1207
DdeI	CTNAG	5 cut(s)	85, 885, 891, 1770, 2143
DinI	GGCGCC	1 cut(s)	1436
DraI	TTTAAA	1 cut(s)	859
DrdI	GACNNNNNNGTC	2 cut(s)	38, 344
DriI	GACNNNNNGTC	1 cut(s)	1090
DseDI	GACNNNNNNGTC	2 cut(s)	38, 344
EaeI	YGGCCR	2 cut(s)	3, 2113
EagI	CGGCCG	1 cut(s)	2113
Eam1104I	CTCTTC	4 cut(s)	446, 1623, 1860, 2082
Eam1105I	GACNNNNNGTC	1 cut(s)	1090
EarI	CTCTTC	4 cut(s)	446, 1623, 1860, 2082
EciI	GGCGGA	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	2113
Eco130I	CCWWGG	1 cut(s)	1337
Eco147I	AGGCCT	1 cut(s)	644
Eco24I	GRGCYC	1 cut(s)	634
Eco31I	GGTCTC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	1744
Eco52I	CGGCCG	1 cut(s)	2113
Eco57I	CTGAAG	1 cut(s)	1494
Eco88I	CYCGRG	2 cut(s)	320, 1210
EcoO109I	RGGNCCY	2 cut(s)	130, 630
EcoRI	GAATTC	1 cut(s)	398
EcoRII	CCWGG	2 cut(s)	180, 1666
EcoRV	GATATC	1 cut(s)	1744
EcoT14I	CCWWGG	1 cut(s)	1337
EcoT22I	ATGCAT	1 cut(s)	1875
EcoT38I	GRGCYC	1 cut(s)	634
EgeI	GGCGCC	1 cut(s)	1436
EheI	GGCGCC	1 cut(s)	1436
ErhI	CCWWGG	1 cut(s)	1337
Esp3I	CGTCTC	2 cut(s)	46, 232
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	5 cut(s)	584, 628, 1319, 1396, 1671
FauI	CCCGC	2 cut(s)	605, 1257
FauNDI	CATATG	1 cut(s)	1458
FblI	GTMKAC	1 cut(s)	1694
FriOI	GRGCYC	1 cut(s)	634
FspBI	CTAG	3 cut(s)	863, 1068, 1820
GlaI	GCGC	6 cut(s)	555, 689, 758, 1154, 1360, 1436
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	3 cut(s)	557, 691, 1438
HaeIII	GGCC	6 cut(s)	5, 131, 632, 644, 1818, 2115
HapII	CCGG	4 cut(s)	9, 240, 371, 393
HgaI	GACGC	3 cut(s)	200, 314, 445
HhaI	GCGC	6 cut(s)	556, 690, 759, 1155, 1361, 1437
Hin1I	GRCGYC	2 cut(s)	192, 1435
Hin6I	GCGC	6 cut(s)	554, 688, 757, 1153, 1359, 1435
HinP1I	GCGC	6 cut(s)	554, 688, 757, 1153, 1359, 1435
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HindIII	AAGCTT	1 cut(s)	1170
HpaI	GTTAAC	1 cut(s)	973
HpaII	CCGG	4 cut(s)	9, 240, 371, 393
HphI	GGTGA	7 cut(s)	9, 139, 511, 685, 1054, 1811, 2078
Hpy166II	GTNNAC	6 cut(s)	807, 973, 1241, 1688, 1695, 1718
Hpy8I	GTNNAC	6 cut(s)	807, 973, 1241, 1688, 1695, 1718
Hpy99I	CGWCG	5 cut(s)	32, 35, 330, 341, 461
HpyAV	CCTTC	9 cut(s)	118, 416, 514, 634, 647, 706, 803, 1469, 1790
HpyCH4III	ACNGT	8 cut(s)	223, 278, 811, 1088, 1105, 1685, 1692, 2123
HpyCH4IV	ACGT	3 cut(s)	33, 1237, 1995
HpyF10VI	GCNNNNNNNGC	7 cut(s)	137, 462, 536, 618, 671, 872, 1879
HpyF3I	CTNAG	5 cut(s)	85, 885, 891, 1770, 2143
HpySE526I	ACGT	3 cut(s)	33, 1237, 1995
Hsp92I	GRCGYC	2 cut(s)	192, 1435
HspAI	GCGC	6 cut(s)	554, 688, 757, 1153, 1359, 1435
KasI	GGCGCC	1 cut(s)	1434
Kpn2I	TCCGGA	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	973
LguI	GCTCTTC	1 cut(s)	446
LmnI	GCTCC	6 cut(s)	259, 609, 1223, 1669, 1709, 2014
Lsp1109I	GCAGC	4 cut(s)	124, 633, 652, 766
LweI	GCATC	4 cut(s)	862, 1012, 1061, 1860
MaeI	CTAG	3 cut(s)	863, 1068, 1820
MaeII	ACGT	3 cut(s)	33, 1237, 1995
MaeIII	GTNAC	4 cut(s)	1937, 2066, 2099, 2123
MbiI	CCGCTC	1 cut(s)	612
MfeI	CAATTG	1 cut(s)	1324
MflI	RGATCY	3 cut(s)	100, 316, 1900
MhlI	GDGCHC	3 cut(s)	634, 834, 1220
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	1435
MlyI	GAGTC	7 cut(s)	21, 98, 398, 1652, 1934, 2096, 2129
MmeI	TCCRAC	6 cut(s)	117, 142, 178, 242, 308, 1992
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1875
MroI	TCCGGA	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	786, 846, 858, 972, 1226, 1806
MslI	CAYNNNNRTG	1 cut(s)	1561
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	4 cut(s)	9, 240, 371, 393
MspR9I	CCNGG	2 cut(s)	182, 1668
MunI	CAATTG	1 cut(s)	1324
Mva1269I	GAATGC	2 cut(s)	667, 1958
MvaI	CCWGG	2 cut(s)	182, 1668
MvnI	CGCG	5 cut(s)	63, 251, 350, 1264, 2118
MwoI	GCNNNNNNNGC	7 cut(s)	137, 462, 536, 618, 671, 872, 1879
NarI	GGCGCC	1 cut(s)	1435
NdeI	CATATG	1 cut(s)	1458
NlaIV	GGNNCC	3 cut(s)	631, 632, 1436
NmuCI	GTSAC	4 cut(s)	1937, 2066, 2099, 2123
NotI	GCGGCCGC	1 cut(s)	2113
NruI	TCGCGA	2 cut(s)	251, 350
NsiI	ATGCAT	1 cut(s)	1875
NspI	RCATGY	6 cut(s)	1037, 1142, 1359, 1560, 1664, 1716
NspV	TTCGAA	1 cut(s)	1288
PaeR7I	CTCGAG	1 cut(s)	320
PagI	TCATGA	3 cut(s)	360, 1078, 1972
PaqCI	CACCTGC	1 cut(s)	1488
PceI	AGGCCT	1 cut(s)	644
PciI	ACATGT	2 cut(s)	1033, 1138
PciSI	GCTCTTC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	2 cut(s)	667, 1958
PfeI	GAWTC	8 cut(s)	331, 367, 709, 881, 1063, 1378, 1426, 1649
PflMI	CCANNNNNTGG	1 cut(s)	181
PleI	GAGTC	7 cut(s)	20, 97, 397, 1651, 1934, 2096, 2129
PluTI	GGCGCC	1 cut(s)	1438
PpsI	GAGTC	7 cut(s)	20, 97, 397, 1651, 1934, 2096, 2129
PscI	ACATGT	2 cut(s)	1033, 1138
PsiI	TTATAA	2 cut(s)	731, 1521
Psp6I	CCWGG	2 cut(s)	180, 1666
PspGI	CCWGG	2 cut(s)	180, 1666
PspN4I	GGNNCC	3 cut(s)	631, 632, 1436
PspOMI	GGGCCC	1 cut(s)	630
PspPI	GGNCC	3 cut(s)	130, 630, 631
PsuI	RGATCY	3 cut(s)	100, 316, 1900
RruI	TCGCGA	2 cut(s)	251, 350
RsaI	GTAC	1 cut(s)	1208
RsaNI	GTAC	1 cut(s)	1207
RseI	CAYNNNNRTG	1 cut(s)	1561
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	6 cut(s)	786, 846, 858, 972, 1226, 1806
Sau96I	GGNCC	3 cut(s)	130, 630, 631
SchI	GAGTC	7 cut(s)	21, 98, 398, 1652, 1934, 2096, 2129
ScrFI	CCNGG	2 cut(s)	182, 1668
SduI	GDGCHC	3 cut(s)	634, 834, 1220
SfaNI	GCATC	4 cut(s)	862, 1012, 1061, 1860
SfcI	CTRYAG	2 cut(s)	1695, 1887
SfoI	GGCGCC	1 cut(s)	1436
Sfr274I	CTCGAG	1 cut(s)	320
SfuI	TTCGAA	1 cut(s)	1288
SlaI	CTCGAG	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	1561
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SseBI	AGGCCT	1 cut(s)	644
SspDI	GGCGCC	1 cut(s)	1434
SspI	AATATT	1 cut(s)	1588
SspMI	CTAG	3 cut(s)	863, 1068, 1820
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	180, 1666
StyI	CCWWGG	1 cut(s)	1337
TaaI	ACNGT	8 cut(s)	223, 278, 811, 1088, 1105, 1685, 1692, 2123
TaiI	ACGT	3 cut(s)	36, 1240, 1998
TaqI	TCGA	7 cut(s)	294, 321, 459, 585, 651, 1288, 1987
TaqII	GACCGA	1 cut(s)	34
TauI	GCSGC	6 cut(s)	63, 533, 554, 601, 2115, 2118
TfiI	GAWTC	8 cut(s)	331, 367, 709, 881, 1063, 1378, 1426, 1649
Tru1I	TTAA	6 cut(s)	786, 846, 858, 972, 1226, 1806
Tru9I	TTAA	6 cut(s)	786, 846, 858, 972, 1226, 1806
TscAI	CASTG	4 cut(s)	540, 631, 1313, 1445
TseFI	GTSAC	4 cut(s)	1937, 2066, 2099, 2123
TseI	GCWGC	4 cut(s)	137, 621, 665, 754
Tsp45I	GTSAC	4 cut(s)	1937, 2066, 2099, 2123
TspGWI	ACGGA	2 cut(s)	1770, 1845
TspRI	CASTG	4 cut(s)	540, 631, 1313, 1445
Van91I	CCANNNNNTGG	1 cut(s)	181
XapI	RAATTY	3 cut(s)	398, 848, 1121
XceI	RCATGY	6 cut(s)	1037, 1142, 1359, 1560, 1664, 1716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XhoI	CTCGAG	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	1694
XspI	CTAG	3 cut(s)	863, 1068, 1820
Zsp2I	ATGCAT	1 cut(s)	1875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.