Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

11587109 .. 11590773

Gene Structure 3665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1125800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1812 bp

ATGGACGTTCGTACGAACGGAGACGACCTCGACACCATTCTCTCCGAGCAGCGCAGAGAGCTCATGACGGCCAAAACCCTGGACTCCGACCTCGAAATGGCCTTCAAACTCCAAATGCAGGAAGCCATGACCGCCTCTCTAGCCGTTAAACCCTCGTCGGCTTCGGCTTCGAGTTCGCACAACCTTCTGCCTCCGTCGCCGCCCGACGATGGCTCGAATGACGCCGTATTAGAATTGGCCGCCACTCTGATGCTCGAGGACGTCGAGCGGTTCGCTCAGGAGCGCGAGGACCACGACCGCACCGTTTTGGAAATGATGAAGGCGAAGGAGGATCTCAACCGTCGGATTTACGATCAGAAGTTCGCCGTCGACCTCCGCGACGTGCCCGAGGACTACTGGGCCAACTACGGCGAATATTACGAGCGCCCGTACTGTACGGGCTTCTGGTCTTCGTCGTCGTCGTCGTCAAAATATCCGGCGGTGGTGAGTGAGAATTTGAGGCTGTATTGCAAGGGGGTGGTGAGCGAGGAAATGGTTAGGGATGTGAAGGCGGTGGTAGGCGGGGTGGGTGTCGCGATCTGCGACCCGATGGACAATGTGATATTCGAGGCGAGGAAGAATCTGGAAGCGGTGGTTGACGGCGTTGTGCTGAGCAATGAGGCGGCGGAGCTCGAGGCCATCGTTGAAGGGCTTGACAAAGCTCTCGCTCTGGACTTGAAAGCTGTGACCTTTTTCTGTGATGACTACATGATTTACCAATATGTCACAAACAGGGTGCATCCTGGAAACAGCAAGGTTGCCACGTTAGTTAATCAAGTGGCTCTTCTACGGAGAAAATTTGTATATTGCAGTCCTTCTCTTGTGGCACGGAGTGACATTAAGTTTGCACTTAAACTTGCAAGAGAGGCTATAGTTTCTCAGATTACCTGGCATGCGGAAACTGGCAAAGGAAAGAGTTTGAAGGAGACATGTGTAATTTGCTTTGAAGAAACTGATGTTGCTGAAATGTTTTCAATCGATGGTTGTTTACACAGGTATTGCTTTTCCTGTATGAGACAACATGTGGAAGTAAAGTTTTTTAATGGGATGGTGGCAGAGTGCCCTCACGAAGGCTGTAAAACTGAGGTGAATATTGATGGCTGCGCAAAATTCTTGGCTCCTAAACTAGTCGAGGCTATTAGCCAAAGAATCAGGGAATCCGCTATTCCTGTTACGGACAAGGTTTATTGCCCAAATCCCAGGTGTTCTGCATTAATGTCTAAAAGCGAGGTCTTAGAATATACTAAAACTTACTTTGTCGGTGCTGAACAATCTGGAGCCAGGAGATGCATGAAATGTCAGTACTATTTTTGTATAAATTGCAAGGTTCCTTGGCACTTCAATATGAACTGCTATGATTACAAAAGATCACATCCCTATCCCCGTCCAGAAGATCAGTTGATGAACTCTCTAGCTACAAAGAAACACTGGCGCCAGTGCGTCAAGTGCAACCATATGGTCGAACTTGCCGAAGGTTGTTACCACATAACTTGCAGATGTGGATATGAGTTTTGCTATACTTGTGGTGCTCAATGGAAGAACAAGAAAGCAACATGTAACTGCCCAATCTGGGTCGAGCGTAATATCATACGTGAACAGCCAAGACAGGCACAGCCAAGGCACGCACAGCCATTTATACGTGAACAGCCACGGCAAGCACAGCCAGTTCAACGTGAACAGCCACGGCAAGCACAGCCACTTATTCGTGAACAGCCATGGCAAGCACAGCCAATTATTCGTGAACAGCCACGACAGGTGCGGCCACGACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

604

Amino Acids

68.99

Weight (kDa)

6.68

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	184 - 303	1.6e-18	Reverse transcriptase-like
IBR	PF01485	406 - 464	9.6e-11	IBR domain, a half RING-finger domain
IBR	PF01485	480 - 532	5.9e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	491 - 529	3.5e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
Acc16I	TGCGCA	1 cut(s)	1144
AccB1I	GGYRCC	1 cut(s)	1470
AccBSI	CCGCTC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	3 cut(s)	285, 378, 575
AclWI	GGATC	1 cut(s)	339
AcoI	YGGCCR	3 cut(s)	69, 237, 1799
AcsI	RAATTY	3 cut(s)	493, 836, 1148
AcyI	GRCGYC	3 cut(s)	222, 261, 1471
AdeI	CACNNNGTG	1 cut(s)	872
AfaI	GTAC	4 cut(s)	13, 431, 436, 1343
AfiI	CCNNNNNNNGG	5 cut(s)	97, 118, 209, 1109, 1609
AflIII	ACRYGT	3 cut(s)	968, 1060, 1592
AgsI	TTSAA	8 cut(s)	106, 686, 718, 961, 986, 1014, 1381, 1709
AhlI	ACTAGT	1 cut(s)	1165
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	5 cut(s)	78, 781, 926, 1238, 1319
AluBI	AGCT	5 cut(s)	61, 670, 701, 722, 1454
AluI	AGCT	5 cut(s)	61, 670, 701, 722, 1454
Alw21I	GWGCWC	3 cut(s)	63, 672, 1570
Alw26I	GTCTC	3 cut(s)	15, 959, 1048
AlwI	GGATC	1 cut(s)	339
Ama87I	CYCGRG	3 cut(s)	254, 386, 671
AoxI	GGCC	6 cut(s)	69, 99, 237, 399, 675, 1799
ApeKI	GCWGC	2 cut(s)	49, 1140
ApoI	RAATTY	3 cut(s)	493, 836, 1148
ArsI	GACNNNNNNTTYG	2 cut(s)	866, 898
AseI	ATTAAT	1 cut(s)	1253
AspLEI	GCGC	5 cut(s)	54, 285, 426, 1145, 1473
AspS9I	GGNCC	2 cut(s)	289, 399
AsuHPI	GGTGA	3 cut(s)	496, 532, 1138
AvaI	CYCGRG	3 cut(s)	254, 386, 671
AvaII	GGWCC	1 cut(s)	289
BaeGI	GKGCMC	2 cut(s)	387, 1103
BanI	GGYRCC	1 cut(s)	1470
BanII	GRGCYC	2 cut(s)	63, 672
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	3 cut(s)	63, 672, 1570
BbvI	GCAGC	2 cut(s)	61, 1127
BccI	CCATC	6 cut(s)	203, 583, 686, 1013, 1081, 1130
BceAI	ACGGC	8 cut(s)	84, 128, 209, 350, 424, 655, 1706, 1739
BciT130I	CCWGG	5 cut(s)	80, 783, 928, 1240, 1321
BcoDI	GTCTC	3 cut(s)	15, 959, 1048
BcuI	ACTAGT	1 cut(s)	1165
BfaI	CTAG	3 cut(s)	140, 1166, 1451
BfmI	CTRYAG	1 cut(s)	909
BfoI	RGCGCY	2 cut(s)	427, 1474
BisI	GCNGC	6 cut(s)	50, 200, 240, 663, 1141, 1799
BlpI	GCTNAGC	1 cut(s)	650
BlsI	GCNGC	6 cut(s)	51, 201, 241, 664, 1142, 1800
BmcAI	AGTACT	1 cut(s)	1343
Bme1390I	CCNGG	5 cut(s)	80, 783, 928, 1240, 1321
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	3 cut(s)	254, 386, 671
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	2 cut(s)	289, 399
BmiI	GGNNCC	4 cut(s)	1158, 1318, 1368, 1472
BmrFI	CCNGG	5 cut(s)	80, 783, 928, 1240, 1321
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	3 cut(s)	240, 787, 1316
BmuI	ACTGGG	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpmI	CTGGAG	1 cut(s)	1335
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu1102I	GCTNAGC	1 cut(s)	650
Bsa29I	ATCGAT	1 cut(s)	1017
BsaAI	YACGTR	2 cut(s)	1631, 1679
BsaHI	GRCGYC	3 cut(s)	222, 261, 1471
BsaJI	CCNNGG	8 cut(s)	78, 387, 1238, 1370, 1655, 1688, 1721, 1754
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 118, 209, 1109, 1609
Bse1I	ACTGG	5 cut(s)	401, 946, 1472, 1474, 1703
Bse3DI	GCAATG	1 cut(s)	661
BseBI	CCWGG	5 cut(s)	80, 783, 928, 1240, 1321
BseCI	ATCGAT	1 cut(s)	1017
BseDI	CCNNGG	8 cut(s)	78, 387, 1238, 1370, 1655, 1688, 1721, 1754
BseGI	GGATG	4 cut(s)	547, 778, 1092, 1411
BseLI	CCNNNNNNNGG	5 cut(s)	97, 118, 209, 1109, 1609
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	4 cut(s)	290, 641, 932, 1113
BseNI	ACTGG	5 cut(s)	401, 946, 1472, 1474, 1703
BseSI	GKGCMC	2 cut(s)	387, 1103
BseXI	GCAGC	2 cut(s)	61, 1127
Bsh1236I	CGCG	3 cut(s)	285, 378, 575
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	6 cut(s)	71, 101, 239, 401, 677, 1801
BshNI	GGYRCC	1 cut(s)	1470
BshVI	ATCGAT	1 cut(s)	1017
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	3 cut(s)	63, 672, 1570
BsiHKCI	CYCGRG	3 cut(s)	254, 386, 671
BsiSI	CCGG	1 cut(s)	476
BsiWI	CGTACG	1 cut(s)	11
BslI	CCNNNNNNNGG	5 cut(s)	97, 118, 209, 1109, 1609
BsmAI	GTCTC	3 cut(s)	15, 959, 1048
BsmBI	CGTCTC	1 cut(s)	15
BsnI	GGCC	6 cut(s)	71, 101, 239, 401, 677, 1801
BsoBI	CYCGRG	3 cut(s)	254, 386, 671
Bsp1286I	GDGCHC	5 cut(s)	63, 387, 672, 1103, 1570
Bsp143I	GATC	5 cut(s)	331, 352, 576, 1406, 1432
Bsp1720I	GCTNAGC	1 cut(s)	650
Bsp19I	CCATGG	1 cut(s)	1754
Bsp68I	TCGCGA	1 cut(s)	575
BspANI	GGCC	6 cut(s)	71, 101, 239, 401, 677, 1801
BspCNI	CTCAG	4 cut(s)	289, 642, 931, 1114
BspDI	ATCGAT	1 cut(s)	1017
BspFNI	CGCG	3 cut(s)	285, 378, 575
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	4 cut(s)	1158, 1318, 1368, 1472
BspPI	GGATC	1 cut(s)	339
BspQI	GCTCTTC	1 cut(s)	828
BspT107I	GGYRCC	1 cut(s)	1470
BsrBI	CCGCTC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	661
BsrI	ACTGG	5 cut(s)	401, 946, 1472, 1474, 1703
BssECI	CCNNGG	8 cut(s)	78, 387, 1238, 1370, 1655, 1688, 1721, 1754
BssMI	GATC	5 cut(s)	331, 352, 576, 1406, 1432
BssNI	GRCGYC	3 cut(s)	222, 261, 1471
BssT1I	CCWWGG	3 cut(s)	1370, 1655, 1754
Bst2UI	CCWGG	5 cut(s)	80, 783, 928, 1240, 1321
Bst4CI	ACNGT	3 cut(s)	304, 341, 434
Bst6I	CTCTTC	1 cut(s)	828
BstACI	GRCGYC	3 cut(s)	222, 261, 1471
BstBAI	YACGTR	2 cut(s)	1631, 1679
BstC8I	GCNNGC	5 cut(s)	933, 1662, 1695, 1728, 1761
BstDEI	CTNAG	5 cut(s)	276, 650, 918, 1122, 1273
BstDSI	CCRYGG	3 cut(s)	1688, 1721, 1754
BstENI	CCTNNNNNAGG	1 cut(s)	1107
BstF5I	GGATG	4 cut(s)	547, 778, 1092, 1411
BstFNI	CGCG	3 cut(s)	285, 378, 575
BstH2I	RGCGCY	2 cut(s)	427, 1474
BstHHI	GCGC	5 cut(s)	54, 285, 426, 1145, 1473
BstKTI	GATC	5 cut(s)	334, 355, 579, 1409, 1435
BstMAI	GTCTC	3 cut(s)	15, 959, 1048
BstMBI	GATC	5 cut(s)	331, 352, 576, 1406, 1432
BstMCI	CGRYCG	1 cut(s)	298
BstNI	CCWGG	5 cut(s)	80, 783, 928, 1240, 1321
BstNSI	RCATGY	4 cut(s)	935, 972, 1064, 1596
BstSCI	CCNGG	5 cut(s)	78, 781, 926, 1238, 1319
BstSFI	CTRYAG	1 cut(s)	909
BstSLI	GKGCMC	2 cut(s)	387, 1103
BstUI	CGCG	3 cut(s)	285, 378, 575
BstV1I	GCAGC	2 cut(s)	61, 1127
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	1017
BsuRI	GGCC	6 cut(s)	71, 101, 239, 401, 677, 1801
BsuTUI	ATCGAT	1 cut(s)	1017
BtgI	CCRYGG	3 cut(s)	1688, 1721, 1754
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	4 cut(s)	547, 778, 1092, 1411
BtsIMutI	CAGTG	2 cut(s)	1465, 1481
BtuMI	TCGCGA	1 cut(s)	575
Cac8I	GCNNGC	5 cut(s)	933, 1662, 1695, 1728, 1761
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	5 cut(s)	54, 285, 426, 1145, 1473
Cfr13I	GGNCC	2 cut(s)	289, 399
ClaI	ATCGAT	1 cut(s)	1017
CseI	GACGC	2 cut(s)	230, 1468
Csp6I	GTAC	4 cut(s)	12, 430, 435, 1342
CspCI	CAANNNNNGTGG	2 cut(s)	1511, 1546
CviAII	CATG	9 cut(s)	64, 127, 748, 932, 969, 1061, 1330, 1593, 1755
CviQI	GTAC	4 cut(s)	12, 430, 435, 1342
DdeI	CTNAG	5 cut(s)	276, 650, 918, 1122, 1273
DinI	GGCGCC	1 cut(s)	1472
DpnI	GATC	5 cut(s)	333, 354, 578, 1408, 1434
DpnII	GATC	5 cut(s)	331, 352, 576, 1406, 1432
DraIII	CACNNNGTG	1 cut(s)	872
EaeI	YGGCCR	3 cut(s)	69, 237, 1799
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
EciI	GGCGGA	1 cut(s)	680
Ecl136II	GAGCTC	2 cut(s)	61, 670
Eco130I	CCWWGG	3 cut(s)	1370, 1655, 1754
Eco24I	GRGCYC	2 cut(s)	63, 672
Eco47I	GGWCC	1 cut(s)	289
Eco53kI	GAGCTC	2 cut(s)	61, 670
Eco88I	CYCGRG	3 cut(s)	254, 386, 671
EcoICRI	GAGCTC	2 cut(s)	61, 670
EcoNI	CCTNNNNNAGG	1 cut(s)	1107
EcoRII	CCWGG	5 cut(s)	78, 781, 926, 1238, 1319
EcoT14I	CCWWGG	3 cut(s)	1370, 1655, 1754
EcoT22I	ATGCAT	1 cut(s)	1331
EcoT38I	GRGCYC	2 cut(s)	63, 672
EgeI	GGCGCC	1 cut(s)	1472
EheI	GGCGCC	1 cut(s)	1472
ErhI	CCWWGG	3 cut(s)	1370, 1655, 1754
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	9 cut(s)	67, 130, 751, 935, 972, 1064, 1333, 1596, 1758
FalI	AAGNNNNNCTT	2 cut(s)	807, 839
FatI	CATG	9 cut(s)	63, 126, 747, 931, 968, 1060, 1329, 1592, 1754
FauI	CCCGC	1 cut(s)	554
FauNDI	CATATG	1 cut(s)	1494
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	6 cut(s)	50, 200, 240, 663, 1141, 1799
FokI	GGATG	4 cut(s)	554, 765, 1099, 1398
FriOI	GRGCYC	2 cut(s)	63, 672
Fsp4HI	GCNGC	6 cut(s)	50, 200, 240, 663, 1141, 1799
FspBI	CTAG	3 cut(s)	140, 1166, 1451
FspI	TGCGCA	1 cut(s)	1144
GlaI	GCGC	5 cut(s)	53, 284, 425, 1144, 1472
GluI	GCNGC	6 cut(s)	50, 200, 240, 663, 1141, 1799
GsuI	CTGGAG	1 cut(s)	1335
HaeII	RGCGCY	2 cut(s)	427, 1474
HaeIII	GGCC	6 cut(s)	71, 101, 239, 401, 677, 1801
HapII	CCGG	1 cut(s)	476
HgaI	GACGC	2 cut(s)	230, 1468
HhaI	GCGC	5 cut(s)	54, 285, 426, 1145, 1473
Hin1I	GRCGYC	3 cut(s)	222, 261, 1471
Hin1II	CATG	9 cut(s)	67, 130, 751, 935, 972, 1064, 1333, 1596, 1758
Hin6I	GCGC	5 cut(s)	52, 283, 424, 1143, 1471
HinP1I	GCGC	5 cut(s)	52, 283, 424, 1143, 1471
HincII	GTYRAC	2 cut(s)	370, 637
HindII	GTYRAC	2 cut(s)	370, 637
HinfI	GANTC	4 cut(s)	83, 619, 1188, 1196
HpaII	CCGG	1 cut(s)	476
HphI	GGTGA	3 cut(s)	496, 532, 1138
Hpy166II	GTNNAC	8 cut(s)	370, 637, 1028, 1634, 1682, 1715, 1748, 1781
Hpy188I	TCNGA	6 cut(s)	46, 88, 249, 345, 357, 921
Hpy8I	GTNNAC	8 cut(s)	370, 637, 1028, 1634, 1682, 1715, 1748, 1781
HpyCH4III	ACNGT	3 cut(s)	304, 341, 434
HpyCH4IV	ACGT	7 cut(s)	6, 261, 381, 803, 1630, 1678, 1711
HpyF3I	CTNAG	5 cut(s)	276, 650, 918, 1122, 1273
HpySE526I	ACGT	7 cut(s)	6, 261, 381, 803, 1630, 1678, 1711
Hsp92I	GRCGYC	3 cut(s)	222, 261, 1471
Hsp92II	CATG	9 cut(s)	67, 130, 751, 935, 972, 1064, 1333, 1596, 1758
HspAI	GCGC	5 cut(s)	52, 283, 424, 1143, 1471
KasI	GGCGCC	1 cut(s)	1470
Kzo9I	GATC	5 cut(s)	331, 352, 576, 1406, 1432
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	4 cut(s)	280, 667, 1162, 1316
Lsp1109I	GCAGC	2 cut(s)	61, 1127
LweI	GCATC	3 cut(s)	240, 787, 1316
MaeI	CTAG	3 cut(s)	140, 1166, 1451
MaeII	ACGT	7 cut(s)	6, 261, 381, 803, 1630, 1678, 1711
MaeIII	GTNAC	6 cut(s)	724, 763, 872, 1210, 1517, 1595
MalI	GATC	5 cut(s)	333, 354, 578, 1408, 1434
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	5 cut(s)	331, 352, 576, 1406, 1432
MboII	GAAGA	6 cut(s)	441, 628, 815, 998, 1442, 1588
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	5 cut(s)	63, 387, 672, 1103, 1570
MluCI	AATT	7 cut(s)	233, 493, 836, 975, 1148, 1357, 1770
Mly113I	GGCGCC	1 cut(s)	1471
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	111, 323
Mph1103I	ATGCAT	1 cut(s)	1331
MseI	TTAA	6 cut(s)	147, 810, 879, 891, 1080, 1253
MslI	CAYNNNNRTG	2 cut(s)	248, 1807
MspI	CCGG	1 cut(s)	476
MspR9I	CCNGG	5 cut(s)	80, 783, 928, 1240, 1321
MvaI	CCWGG	5 cut(s)	80, 783, 928, 1240, 1321
MvnI	CGCG	3 cut(s)	285, 378, 575
NarI	GGCGCC	1 cut(s)	1471
NcoI	CCATGG	1 cut(s)	1754
NdeI	CATATG	1 cut(s)	1494
NdeII	GATC	5 cut(s)	331, 352, 576, 1406, 1432
NlaIII	CATG	9 cut(s)	67, 130, 751, 935, 972, 1064, 1333, 1596, 1758
NlaIV	GGNNCC	4 cut(s)	1158, 1318, 1368, 1472
NmuCI	GTSAC	3 cut(s)	724, 763, 872
NruI	TCGCGA	1 cut(s)	575
NsbI	TGCGCA	1 cut(s)	1144
NsiI	ATGCAT	1 cut(s)	1331
NspI	RCATGY	4 cut(s)	935, 972, 1064, 1596
PaeI	GCATGC	1 cut(s)	935
PaeR7I	CTCGAG	2 cut(s)	254, 671
PagI	TCATGA	1 cut(s)	63
PciI	ACATGT	3 cut(s)	968, 1060, 1592
PciSI	GCTCTTC	1 cut(s)	828
PcsI	WCGNNNNNNNCGW	8 cut(s)	261, 300, 375, 458, 461, 579, 678, 1506
PfeI	GAWTC	3 cut(s)	619, 1188, 1196
Pfl23II	CGTACG	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	781
PkrI	GCNGC	6 cut(s)	51, 201, 241, 664, 1142, 1800
PleI	GAGTC	1 cut(s)	77
PluTI	GGCGCC	1 cut(s)	1474
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	2 cut(s)	1631, 1679
PscI	ACATGT	3 cut(s)	968, 1060, 1592
PshBI	ATTAAT	1 cut(s)	1253
Psp124BI	GAGCTC	2 cut(s)	63, 672
Psp6I	CCWGG	5 cut(s)	78, 781, 926, 1238, 1319
PspGI	CCWGG	5 cut(s)	78, 781, 926, 1238, 1319
PspLI	CGTACG	1 cut(s)	11
PspN4I	GGNNCC	4 cut(s)	1158, 1318, 1368, 1472
PspPI	GGNCC	2 cut(s)	289, 399
PspXI	VCTCGAGB	2 cut(s)	254, 671
PsuI	RGATCY	1 cut(s)	331
RruI	TCGCGA	1 cut(s)	575
RsaI	GTAC	4 cut(s)	13, 431, 436, 1343
RsaNI	GTAC	4 cut(s)	12, 430, 435, 1342
RseI	CAYNNNNRTG	2 cut(s)	248, 1807
SacI	GAGCTC	2 cut(s)	63, 672
SalI	GTCGAC	1 cut(s)	368
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	6 cut(s)	147, 810, 879, 891, 1080, 1253
SatI	GCNGC	6 cut(s)	50, 200, 240, 663, 1141, 1799
Sau3AI	GATC	5 cut(s)	331, 352, 576, 1406, 1432
Sau96I	GGNCC	2 cut(s)	289, 399
ScaI	AGTACT	1 cut(s)	1343
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	5 cut(s)	80, 783, 928, 1240, 1321
SduI	GDGCHC	5 cut(s)	63, 387, 672, 1103, 1570
SfaNI	GCATC	3 cut(s)	240, 787, 1316
SfcI	CTRYAG	1 cut(s)	909
SfoI	GGCGCC	1 cut(s)	1472
Sfr274I	CTCGAG	2 cut(s)	254, 671
SinI	GGWCC	1 cut(s)	289
SlaI	CTCGAG	2 cut(s)	254, 671
SmiMI	CAYNNNNRTG	2 cut(s)	248, 1807
SmlI	CTYRAG	2 cut(s)	254, 671
SmoI	CTYRAG	2 cut(s)	254, 671
SpeI	ACTAGT	1 cut(s)	1165
SphI	GCATGC	1 cut(s)	935
Sse9I	AATT	7 cut(s)	233, 493, 836, 975, 1148, 1357, 1770
SspDI	GGCGCC	1 cut(s)	1470
SspI	AATATT	2 cut(s)	416, 1132
SspMI	CTAG	3 cut(s)	140, 1166, 1451
SstI	GAGCTC	2 cut(s)	63, 672
StyD4I	CCNGG	5 cut(s)	78, 781, 926, 1238, 1319
StyI	CCWWGG	3 cut(s)	1370, 1655, 1754
TaaI	ACNGT	3 cut(s)	304, 341, 434
TaiI	ACGT	7 cut(s)	9, 264, 384, 806, 1633, 1681, 1714
TasI	AATT	7 cut(s)	233, 493, 836, 975, 1148, 1357, 1770
TatI	WGTACW	1 cut(s)	1341
TauI	GCSGC	4 cut(s)	202, 242, 665, 1801
TfiI	GAWTC	3 cut(s)	619, 1188, 1196
Tru1I	TTAA	6 cut(s)	147, 810, 879, 891, 1080, 1253
Tru9I	TTAA	6 cut(s)	147, 810, 879, 891, 1080, 1253
TscAI	CASTG	2 cut(s)	1472, 1481
TseFI	GTSAC	3 cut(s)	724, 763, 872
TseI	GCWGC	2 cut(s)	49, 1140
Tsp45I	GTSAC	3 cut(s)	724, 763, 872
TspDTI	ATGAA	4 cut(s)	332, 1346, 1400, 1457
TspGWI	ACGGA	5 cut(s)	33, 183, 844, 883, 1229
TspRI	CASTG	2 cut(s)	1472, 1481
VpaK11BI	GGWCC	1 cut(s)	289
VspI	ATTAAT	1 cut(s)	1253
XagI	CCTNNNNNAGG	1 cut(s)	1107
XapI	RAATTY	3 cut(s)	493, 836, 1148
XceI	RCATGY	4 cut(s)	935, 972, 1064, 1596
XhoI	CTCGAG	2 cut(s)	254, 671
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	3 cut(s)	140, 1166, 1451
ZraI	GACGTC	1 cut(s)	262
ZrmI	AGTACT	1 cut(s)	1343
Zsp2I	ATGCAT	1 cut(s)	1331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.