Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

65862390 .. 65865239

Gene Structure 2850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G037430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGAAGACCGTACGGACCAAGACAACCTCCGCTCCATTCTCTCCGACCACCTCAGACACCTCAGGGTGGCCAAAACCCTCGAGTCCGACCACGACATGGCCTTCAATCTCCAACTGCAGGAAGCCATGGCCGCCTCTCTGGCTCTCCAACCCCCATCCACCTCTCCACAGACGCTCCACCCTCGCATTCACGGCCACGATTTCGTAATCGACCTCACCGACTGGCCGGAAGCCTACTGCACGAACGACGCGTCGTCTTCGTCTAAGGCGGCGGAGGAGGAGACCGAGTGTTTTAGACTGTATTTCAAGGGGCTTGTAAGCGCGGAGAGGGTCAAGGACATGGATGTCATTGTGGCCGGGGTTGGGGTGGCCGTTTGTGACGCTAGAGATAATCTGATTTTGGAGGCCAAGAAGAATCTGGAGGCGTTTGGTGGTGGTGAGGTTCTGAGCAATGAGGCTGCTGAGCTTGAGGCTCTTATTGAAGGGCTCAGTACAGCTCTCACTCTGGACTTGAGAAATGTCACATTTTTCTGTGATAACAACAAGCTTTACCAATATGTTACATACATAGTGCATCCTGAAAGCTTTAAGATTGCGACATTAGTCACTCAAGTTGCTCTTCTACAAAGAAAATTTGAACATTGCACTCCTTCTCTTGTGGAACGTAGTGCCATTAAGTTTGCATTCCAATTTGCAAGAGAGGCTATAGTTTCTCAGATCACCTGGACAGCTAGTAATGGCAAGAGATTCAATGAGACTTGTGTCATTTGTTTTGAAGAAACAGATGTTACTAGAATGTTTTCAATTGAAGGCTGTCTGCACAGGTATTGCTGTAATTGTATGAAACAGCATATTGAAGCAAAGTTGCTTAATGGGAGCATGGTGCAGTGTCCTCATGAAGGCTGTGAGTCTGAAGTGAGTATTGATAGCTGTGAAACATTCTTGGAGCCTAAACTTGTTCAGGTCATGCGCCAACGAATCAAGGAATCTTCTATTCCTGTTACAGAGAAAGTTTACTGTCCAGATCCCAAGTGTTCTGCATTGATGTCAAAAAATGATGTCTTGGAATATACTAAGAATTATTTTGTTGCTGTTGAACAATCTGGAGTCAGGTTATGCATGGAATGTCATCGCTGTTTTTGTATCAATTGCAAAGTTCCATTCGACAATCATACTTGCTATGACTACAAGAAATCAAATCCTTGTGCAGAAGAGCAATTGGTGAAGTCACTGGCTAAAAAGAAGCACTGGCGCCAGTGTGTGAACTGCAGCCATATGGTTGAACTTGCAGAAGGTTGTTACCACATAACTTGCAGATGTGGATATGAGTTTTGCTATACTTGTGGAGCTGAATGGAAGGACAAGACACCAACATGTTCCTGCCCAATCTGGGATGAGTGCAACATTATACGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

472

Amino Acids

53.59

Weight (kDa)

5.47

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	119 - 235	2.1e-18	Reverse transcriptase-like
IBR	PF01485	408 - 459	5.9e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	1251
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	33
AccII	CGCG	2 cut(s)	251, 323
AciI	CCGC	5 cut(s)	31, 132, 269, 272, 323
AclWI	GGATC	1 cut(s)	1019
AcoI	YGGCCR	6 cut(s)	69, 129, 193, 224, 354, 369
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	1 cut(s)	933
AcyI	GRCGYC	1 cut(s)	1252
AfaI	GTAC	2 cut(s)	13, 493
AfiI	CCNNNNNNNGG	6 cut(s)	67, 97, 118, 363, 899, 1390
AflIII	ACRYGT	2 cut(s)	249, 1373
AhdI	GACNNNNNGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	722
AluBI	AGCT	7 cut(s)	466, 497, 547, 585, 731, 930, 1349
AluI	AGCT	7 cut(s)	466, 497, 547, 585, 731, 930, 1349
Alw26I	GTCTC	2 cut(s)	275, 749
AlwI	GGATC	1 cut(s)	1019
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	8 cut(s)	69, 99, 129, 193, 224, 354, 369, 405
ApeKI	GCWGC	2 cut(s)	458, 1269
ApoI	RAATTY	1 cut(s)	632
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	1 cut(s)	799
AspLEI	GCGC	3 cut(s)	323, 972, 1254
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	4 cut(s)	208, 449, 712, 1234
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	1251
BanII	GRGCYC	1 cut(s)	489
BbsI	GAAGAC	2 cut(s)	12, 249
BbvI	GCAGC	2 cut(s)	445, 1281
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	2 cut(s)	208, 356
BciT130I	CCWGG	1 cut(s)	724
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	275, 749
BfaI	CTAG	3 cut(s)	384, 732, 792
BfmI	CTRYAG	3 cut(s)	116, 705, 1267
BfoI	RGCGCY	1 cut(s)	1255
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	4 cut(s)	132, 270, 459, 1270
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	4 cut(s)	133, 271, 460, 1271
Bme1390I	CCNGG	2 cut(s)	358, 724
Bme18I	GGWCC	1 cut(s)	16
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	948, 1253
BmrFI	CCNGG	2 cut(s)	358, 724
BmsI	GCATC	1 cut(s)	583
BoxI	GACNNNNGTC	2 cut(s)	602, 761
BpiI	GAAGAC	2 cut(s)	12, 249
BpmI	CTGGAG	2 cut(s)	440, 1125
Bpu1102I	GCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	3 cut(s)	488, 532, 594
BpuMI	CCSGG	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	1252
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	126, 357
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 47, 159, 189, 272, 302
Bsc4I	CCNNNNNNNGG	6 cut(s)	67, 97, 118, 363, 899, 1390
Bse1I	ACTGG	4 cut(s)	227, 1236, 1253, 1255
Bse21I	CCTNAGG	1 cut(s)	62
Bse3DI	GCAATG	2 cut(s)	457, 640
BseBI	CCWGG	1 cut(s)	724
BseDI	CCNNGG	2 cut(s)	126, 357
BseGI	GGATG	4 cut(s)	155, 349, 574, 1399
BseLI	CCNNNNNNNGG	6 cut(s)	67, 97, 118, 363, 899, 1390
BseMI	GCAATG	2 cut(s)	457, 640
BseMII	CTCAG	6 cut(s)	67, 76, 437, 453, 502, 728
BseNI	ACTGG	4 cut(s)	227, 1236, 1253, 1255
BseRI	GAGGAG	2 cut(s)	290, 293
BseXI	GCAGC	2 cut(s)	445, 1281
BsgI	GTGCAG	4 cut(s)	223, 803, 905, 1227
Bsh1236I	CGCG	2 cut(s)	251, 323
BshFI	GGCC	8 cut(s)	71, 101, 131, 195, 226, 356, 371, 407
BshNI	GGYRCC	1 cut(s)	1251
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	227, 357
BsiWI	CGTACG	1 cut(s)	11
BslI	CCNNNNNNNGG	6 cut(s)	67, 97, 118, 363, 899, 1390
BsmAI	GTCTC	2 cut(s)	275, 749
BsmI	GAATGC	2 cut(s)	186, 683
BsnI	GGCC	8 cut(s)	71, 101, 131, 195, 226, 356, 371, 407
Bso31I	GGTCTC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	717, 1024
Bsp1720I	GCTNAGC	1 cut(s)	462
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	5 cut(s)	31, 132, 269, 272, 323
BspANI	GGCC	8 cut(s)	71, 101, 131, 195, 226, 356, 371, 407
BspCNI	CTCAG	6 cut(s)	66, 75, 438, 454, 501, 727
BspFNI	CGCG	2 cut(s)	251, 323
BspHI	TCATGA	1 cut(s)	895
BspLI	GGNNCC	2 cut(s)	948, 1253
BspMAI	CTGCAG	2 cut(s)	120, 1271
BspPI	GGATC	1 cut(s)	1019
BspQI	GCTCTTC	2 cut(s)	624, 1206
BspT107I	GGYRCC	1 cut(s)	1251
BspTNI	GGTCTC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	33
BsrDI	GCAATG	2 cut(s)	457, 640
BsrI	ACTGG	4 cut(s)	227, 1236, 1253, 1255
BssECI	CCNNGG	2 cut(s)	126, 357
BssMI	GATC	2 cut(s)	717, 1024
BssNI	GRCGYC	1 cut(s)	1252
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	724
Bst4CI	ACNGT	3 cut(s)	11, 300, 1019
Bst6I	CTCTTC	2 cut(s)	624, 1206
BstACI	GRCGYC	1 cut(s)	1252
BstDEI	CTNAG	8 cut(s)	53, 62, 264, 446, 462, 488, 714, 1074
BstDSI	CCRYGG	1 cut(s)	126
BstENI	CCTNNNNNAGG	1 cut(s)	897
BstF5I	GGATG	4 cut(s)	155, 349, 574, 1399
BstFNI	CGCG	2 cut(s)	251, 323
BstH2I	RGCGCY	1 cut(s)	1255
BstHHI	GCGC	3 cut(s)	323, 972, 1254
BstKTI	GATC	2 cut(s)	720, 1027
BstMAI	GTCTC	2 cut(s)	275, 749
BstMBI	GATC	2 cut(s)	717, 1024
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 140, 192, 701
BstNI	CCWGG	1 cut(s)	724
BstNSI	RCATGY	1 cut(s)	1377
BstPAI	GACNNNNGTC	2 cut(s)	602, 761
BstSCI	CCNGG	2 cut(s)	356, 722
BstSFI	CTRYAG	3 cut(s)	116, 705, 1267
BstUI	CGCG	2 cut(s)	251, 323
BstV1I	GCAGC	2 cut(s)	445, 1281
BstV2I	GAAGAC	2 cut(s)	12, 249
BstX2I	RGATCY	1 cut(s)	1024
BstYI	RGATCY	1 cut(s)	1024
Bsu36I	CCTNAGG	1 cut(s)	62
BsuRI	GGCC	8 cut(s)	71, 101, 131, 195, 226, 356, 371, 407
BtgI	CCRYGG	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	1115
BtsCI	GGATG	4 cut(s)	155, 349, 574, 1399
BtsI	GCAGTG	1 cut(s)	893
BtsIMutI	CAGTG	4 cut(s)	893, 1229, 1246, 1262
CciI	TCATGA	1 cut(s)	895
CfoI	GCGC	3 cut(s)	323, 972, 1254
Cfr13I	GGNCC	1 cut(s)	16
CseI	GACGC	4 cut(s)	181, 240, 257, 389
Csp6I	GTAC	2 cut(s)	12, 492
CspCI	CAANNNNNGTGG	2 cut(s)	1292, 1327
CviAII	CATG	8 cut(s)	97, 127, 340, 880, 896, 967, 1120, 1374
CviQI	GTAC	2 cut(s)	12, 492
DdeI	CTNAG	8 cut(s)	53, 62, 264, 446, 462, 488, 714, 1074
DinI	GGCGCC	1 cut(s)	1253
DpnI	GATC	2 cut(s)	719, 1026
DpnII	GATC	2 cut(s)	717, 1024
DrdI	GACNNNNNNGTC	1 cut(s)	344
DriI	GACNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	6 cut(s)	69, 129, 193, 224, 354, 369
Eam1104I	CTCTTC	2 cut(s)	624, 1206
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EarI	CTCTTC	2 cut(s)	624, 1206
EciI	GGCGGA	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	489
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	933
Eco81I	CCTNAGG	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	897
EcoRII	CCWGG	1 cut(s)	722
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	1121
EcoT38I	GRGCYC	1 cut(s)	489
EgeI	GGCGCC	1 cut(s)	1253
EheI	GGCGCC	1 cut(s)	1253
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	8 cut(s)	100, 130, 343, 883, 899, 970, 1123, 1377
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FatI	CATG	8 cut(s)	96, 126, 339, 879, 895, 966, 1119, 1373
FauNDI	CATATG	1 cut(s)	1275
Fnu4HI	GCNGC	4 cut(s)	132, 270, 459, 1270
FokI	GGATG	4 cut(s)	142, 356, 561, 1406
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	4 cut(s)	132, 270, 459, 1270
FspBI	CTAG	3 cut(s)	384, 732, 792
GlaI	GCGC	3 cut(s)	322, 971, 1253
GluI	GCNGC	4 cut(s)	132, 270, 459, 1270
GsuI	CTGGAG	2 cut(s)	440, 1125
HaeII	RGCGCY	1 cut(s)	1255
HaeIII	GGCC	8 cut(s)	71, 101, 131, 195, 226, 356, 371, 407
HapII	CCGG	2 cut(s)	227, 357
HgaI	GACGC	4 cut(s)	181, 240, 257, 389
HhaI	GCGC	3 cut(s)	323, 972, 1254
Hin1I	GRCGYC	1 cut(s)	1252
Hin1II	CATG	8 cut(s)	100, 130, 343, 883, 899, 970, 1123, 1377
Hin6I	GCGC	3 cut(s)	321, 970, 1252
HinP1I	GCGC	3 cut(s)	321, 970, 1252
HindIII	AAGCTT	2 cut(s)	545, 583
HinfI	GANTC	7 cut(s)	83, 415, 747, 908, 978, 986, 1107
HpaII	CCGG	2 cut(s)	227, 357
HphI	GGTGA	4 cut(s)	208, 449, 712, 1234
Hpy166II	GTNNAC	2 cut(s)	1015, 1264
Hpy188I	TCNGA	7 cut(s)	46, 56, 88, 396, 447, 717, 913
Hpy188III	TCNNGA	6 cut(s)	419, 506, 578, 896, 1022, 1104
Hpy8I	GTNNAC	2 cut(s)	1015, 1264
Hpy99I	CGWCG	2 cut(s)	251, 256
HpyAV	CCTTC	7 cut(s)	112, 476, 660, 803, 893, 1286, 1351
HpyCH4III	ACNGT	3 cut(s)	11, 300, 1019
HpyCH4IV	ACGT	1 cut(s)	664
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 140, 192, 701
HpyF3I	CTNAG	8 cut(s)	53, 62, 264, 446, 462, 488, 714, 1074
HpySE526I	ACGT	1 cut(s)	664
Hsp92I	GRCGYC	1 cut(s)	1252
Hsp92II	CATG	8 cut(s)	100, 130, 343, 883, 899, 970, 1123, 1377
HspAI	GCGC	3 cut(s)	321, 970, 1252
KasI	GGCGCC	1 cut(s)	1251
Kzo9I	GATC	2 cut(s)	717, 1024
LguI	GCTCTTC	2 cut(s)	624, 1206
LmnI	GCTCC	5 cut(s)	38, 180, 876, 946, 1346
Lsp1109I	GCAGC	2 cut(s)	445, 1281
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	3 cut(s)	384, 732, 792
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	8 cut(s)	377, 520, 559, 604, 787, 1000, 1227, 1298
MalI	GATC	2 cut(s)	719, 1026
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	2 cut(s)	717, 1024
MboII	GAAGA	7 cut(s)	17, 249, 424, 611, 788, 981, 1223
MfeI	CAATTG	3 cut(s)	804, 1147, 1217
MflI	RGATCY	1 cut(s)	1024
MhlI	GDGCHC	1 cut(s)	489
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	7 cut(s)	632, 689, 804, 835, 1078, 1147, 1217
MluI	ACGCGT	1 cut(s)	249
MluNI	TGGCCA	1 cut(s)	71
Mly113I	GGCGCC	1 cut(s)	1252
MlyI	GAGTC	3 cut(s)	92, 917, 1116
MmeI	TCCRAC	4 cut(s)	69, 111, 136, 172
Mox20I	TGGCCA	1 cut(s)	71
Mph1103I	ATGCAT	1 cut(s)	1121
MroXI	GAANNNNTTC	1 cut(s)	799
MscI	TGGCCA	1 cut(s)	71
MseI	TTAA	3 cut(s)	588, 675, 870
MslI	CAYNNNNRTG	1 cut(s)	1372
Msp20I	TGGCCA	1 cut(s)	71
MspI	CCGG	2 cut(s)	227, 357
MspR9I	CCNGG	2 cut(s)	358, 724
MunI	CAATTG	3 cut(s)	804, 1147, 1217
Mva1269I	GAATGC	2 cut(s)	186, 683
MvaI	CCWGG	1 cut(s)	724
MvnI	CGCG	2 cut(s)	251, 323
MwoI	GCNNNNNNNGC	4 cut(s)	131, 140, 192, 701
NarI	GGCGCC	1 cut(s)	1252
NciI	CCSGG	1 cut(s)	358
NcoI	CCATGG	1 cut(s)	126
NdeI	CATATG	1 cut(s)	1275
NdeII	GATC	2 cut(s)	717, 1024
NlaIII	CATG	8 cut(s)	100, 130, 343, 883, 899, 970, 1123, 1377
NlaIV	GGNNCC	2 cut(s)	948, 1253
NmuCI	GTSAC	4 cut(s)	377, 520, 604, 1227
NsiI	ATGCAT	1 cut(s)	1121
NspI	RCATGY	1 cut(s)	1377
PaeR7I	CTCGAG	1 cut(s)	80
PagI	TCATGA	1 cut(s)	895
PciI	ACATGT	1 cut(s)	1373
PciSI	GCTCTTC	2 cut(s)	624, 1206
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 248
PctI	GAATGC	2 cut(s)	186, 683
PdmI	GAANNNNTTC	1 cut(s)	799
PfeI	GAWTC	4 cut(s)	415, 747, 978, 986
Pfl23II	CGTACG	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	97
PkrI	GCNGC	4 cut(s)	133, 271, 460, 1271
PleI	GAGTC	3 cut(s)	91, 916, 1115
PluTI	GGCGCC	1 cut(s)	1255
PpsI	GAGTC	3 cut(s)	91, 916, 1115
PscI	ACATGT	1 cut(s)	1373
PshAI	GACNNNNGTC	2 cut(s)	602, 761
Psp6I	CCWGG	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	722
PspLI	CGTACG	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	948, 1253
PspPI	GGNCC	1 cut(s)	16
PspXI	VCTCGAGB	1 cut(s)	80
PstI	CTGCAG	2 cut(s)	120, 1271
PsuI	RGATCY	1 cut(s)	1024
RsaI	GTAC	2 cut(s)	13, 493
RsaNI	GTAC	2 cut(s)	12, 492
RseI	CAYNNNNRTG	1 cut(s)	1372
SapI	GCTCTTC	2 cut(s)	624, 1206
SaqAI	TTAA	3 cut(s)	588, 675, 870
SatI	GCNGC	4 cut(s)	132, 270, 459, 1270
Sau3AI	GATC	2 cut(s)	717, 1024
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	3 cut(s)	92, 917, 1116
ScrFI	CCNGG	2 cut(s)	358, 724
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	3 cut(s)	116, 705, 1267
SfoI	GGCGCC	1 cut(s)	1253
Sfr274I	CTCGAG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	16
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	1372
SmlI	CTYRAG	4 cut(s)	80, 467, 511, 609
SmoI	CTYRAG	4 cut(s)	80, 467, 511, 609
Sse9I	AATT	7 cut(s)	632, 689, 804, 835, 1078, 1147, 1217
SsiI	CCGC	5 cut(s)	31, 132, 269, 272, 323
SspDI	GGCGCC	1 cut(s)	1251
SspMI	CTAG	3 cut(s)	384, 732, 792
StyD4I	CCNGG	2 cut(s)	356, 722
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	3 cut(s)	11, 300, 1019
TaiI	ACGT	1 cut(s)	667
TaqI	TCGA	3 cut(s)	81, 210, 1164
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	7 cut(s)	632, 689, 804, 835, 1078, 1147, 1217
TatI	WGTACW	1 cut(s)	491
TauI	GCSGC	2 cut(s)	134, 272
TfiI	GAWTC	4 cut(s)	415, 747, 978, 986
Tru1I	TTAA	3 cut(s)	588, 675, 870
Tru9I	TTAA	3 cut(s)	588, 675, 870
TscAI	CASTG	4 cut(s)	893, 1236, 1253, 1262
TseFI	GTSAC	4 cut(s)	377, 520, 604, 1227
TseI	GCWGC	2 cut(s)	458, 1269
Tsp45I	GTSAC	4 cut(s)	377, 520, 604, 1227
TspDTI	ATGAA	2 cut(s)	857, 912
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	4 cut(s)	893, 1236, 1253, 1262
Van91I	CCANNNNNTGG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	16
XagI	CCTNNNNNAGG	1 cut(s)	897
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	1 cut(s)	1377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	799
XspI	CTAG	3 cut(s)	384, 732, 792
Zsp2I	ATGCAT	1 cut(s)	1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.