Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

68847787 .. 68851189

Gene Structure 3403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG397600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGGAAACCCCAACGGAGCAAACCGACGTCCACGTCATCCTCTCGGAGCAGCGCAGGGAGCTCTTGGCGGCCAAAACCCTAGACGCCGACCTCGACTTGGCCTTCAATCTCCAAATGCAAGAAGCCATAACCGCCTCTCTGGCGCTCAATCCATCGCCGAGTACTTCGCAGTCTCCTCCTCCGTCGCAGCCGTACGAGCCAAACGACGACGTGTTGGACATCGCCGCCACGCTGCTGCTGGCGGACGTGGAGAGGTTCTCGCAGGAGTACGAGGACCACGAGCGCAGCGTTTTGGAGGCGAGGAAGGCGAAGGAGGATCTGGACCGTCGGATTCACGACCACAAGTTCGCGATCGACGTCAGTGACTTGCCGGAGGAATACTGGAGGAATCACGGGGACGTGTACGAACGGCCGTTCTGTACGGATGGGGCGTCGTCGTCGGGAAAAGCTGCGGCGGAGACAGAGTGTTTGAGATTGTACTGCAAGGGTTTGATTAGTGAAGAGTTGGTGAAGAATGTGAAAATGGCGGTGGGTGGAATTGGGGTTGCGATTTGTGACCCTAGAGATAATCTGGTTTTCGAGGTGAAGAAGAATATGGAGGCGGTGGTTGAGGGTGAGAGACTGAGCGATGAGGCTGCGGAGCTTGAGGCTCTGGTTGAAGGGCTAAATAAAGCTCTTGCTATGGACTTGAAGAATGTCACATTTTTCTGTGATGATAACAAGCTTTACCAATATTTTACAAACAGAGTGGTTCCTGGAAACAGCAAAATTGCAACACTAGTCAACCAAGTTGCTCTTCTACAAAAAGAATTTGAATCCTGCAGCCCTTCACTTGTGGCACGTGGTGATATTAAGTTTGCATTTAAATTTGCAAGAGAGGCTATAGTTTCCCAGATCACCTGGCAAGCAGAAACAAGCAATGGCAAGTGTTTGAAGGAGACTTGTGTCATATGTTATGAAGAAACTGATGTTGCTCGAATGTTTTCAATCGATGGTTGTCTGCACAGGTATTGCATTTCTTGTATGAAACAGCACGTGGAAGTAAGGTTGCTTAATGGGATGGTGGCACATTGTCCTCATGATGGCTGCAAATCCGAAGTGAATATTGATAGCTATGAGAATTTCTTCTTGGCACCTAAACTAGTTGAGGTTATGAACCAACGAATCAAGGAGTCTTCTATTCATGTTACAGACAGAGTCTATTGCCAATATCCCAAGTGTTCTGCATTAATGTCCAAGAAGGAGATCTTAGAATATACCAAAACTTCTTATGTTGGTGCGGAGGAATCTGGAGCCAGAAAATGCATGAAATGCCACTACTATTTTTGTATCAAGTGCTTGGTTCCTTGGCATTTTGAATTGACCTGTGATGAGTACCAAACGTCACACAATTTCCCTAAAGAACATCAAATGCTGAAGTCACTGGCTACAAAGAGACTCTGGCGGCAGTGTGTTAAGTGCAACCACATGGTTGAACTTGCACACGGTTGTTACCACATTACTTGCAGATGTGGATATCAGTTTTGCTACACTTGTGGAGCGGAATGGAAGGACAAGAAACCTTGTTCCTGCCCACTCTGGGACGAGCAGTACATACTTACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

535

Amino Acids

60.89

Weight (kDa)

5.44

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	175 - 294	4.5e-20	Reverse transcriptase-like
IBR	PF01485	395 - 456	4.3e-09	IBR domain, a half RING-finger domain
IBR	PF01485	472 - 522	1.2e-06	IBR domain, a half RING-finger domain
Rcat_RNF216	PF26200	473 - 517	7.5e-06	RNF216 Rcat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AatII	GACGTC	2 cut(s)	30, 360
AccB1I	GGYRCC	1 cut(s)	1132
AccBSI	CCGCTC	1 cut(s)	1541
AccII	CGCG	1 cut(s)	350
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	2 cut(s)	69, 410
AcsI	RAATTY	3 cut(s)	809, 866, 1120
AcuI	CTGAAG	1 cut(s)	1436
AcvI	CACGTG	2 cut(s)	842, 1036
AcyI	GRCGYC	4 cut(s)	27, 84, 357, 431
AdeI	CACNNNGTG	1 cut(s)	845
AfaI	GTAC	8 cut(s)	163, 194, 269, 404, 421, 479, 1376, 1592
AfiI	CCNNNNNNNGG	3 cut(s)	97, 1082, 1579
AflIII	ACRYGT	2 cut(s)	210, 399
AgsI	TTSAA	8 cut(s)	106, 659, 691, 815, 934, 987, 1358, 1475
AhlI	ACTAGT	2 cut(s)	778, 1141
AjiI	CACGTC	4 cut(s)	34, 211, 247, 400
AjnI	CCWGG	2 cut(s)	754, 899
AjuI	GAANNNNNNNTTGG	4 cut(s)	780, 812, 1112, 1144
AluBI	AGCT	6 cut(s)	61, 449, 643, 674, 724, 1113
AluI	AGCT	6 cut(s)	61, 449, 643, 674, 724, 1113
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	5 cut(s)	177, 452, 613, 932, 1429
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	3 cut(s)	69, 99, 410
ApeKI	GCWGC	9 cut(s)	49, 187, 232, 235, 285, 449, 635, 822, 1086
ApoI	RAATTY	3 cut(s)	809, 866, 1120
ArsI	GACNNNNNNTTYG	4 cut(s)	329, 361, 451, 483
AseI	ATTAAT	1 cut(s)	1229
Asp700I	GAANNNNTTC	2 cut(s)	982, 1124
AspLEI	GCGC	3 cut(s)	54, 145, 285
AspS9I	GGNCC	2 cut(s)	274, 322
AsuHPI	GGTGA	5 cut(s)	520, 595, 626, 857, 889
AvaII	GGWCC	2 cut(s)	274, 322
BanI	GGYRCC	1 cut(s)	1132
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	278
BbrPI	CACGTG	2 cut(s)	842, 1036
BbsI	GAAGAC	1 cut(s)	1167
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	9 cut(s)	61, 199, 219, 222, 297, 436, 622, 834, 1073
BccI	CCATC	5 cut(s)	160, 419, 986, 1054, 1076
BceAI	ACGGC	3 cut(s)	175, 397, 425
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	2 cut(s)	756, 901
BcoDI	GTCTC	5 cut(s)	177, 452, 613, 932, 1429
BcuI	ACTAGT	2 cut(s)	778, 1141
BfaI	CTAG	4 cut(s)	80, 561, 779, 1142
BfmI	CTRYAG	2 cut(s)	820, 882
BfoI	RGCGCY	1 cut(s)	146
BglI	GCCNNNNNGGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	1245
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	756, 901
Bme18I	GGWCC	2 cut(s)	274, 322
BmgBI	CACGTC	4 cut(s)	34, 211, 247, 400
BmgT120I	GGNCC	2 cut(s)	274, 322
BmiI	GGNNCC	4 cut(s)	753, 1134, 1294, 1344
BmrFI	CCNGG	2 cut(s)	756, 901
BoxI	GACNNNNGTC	1 cut(s)	944
BpiI	GAAGAC	1 cut(s)	1167
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	2 cut(s)	403, 1311
BpuEI	CTTGAG	1 cut(s)	665
Bsa29I	ATCGAT	1 cut(s)	990
BsaAI	YACGTR	2 cut(s)	842, 1036
BsaHI	GRCGYC	4 cut(s)	27, 84, 357, 431
BsaJI	CCNNGG	1 cut(s)	1346
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 1082, 1579
Bse1I	ACTGG	2 cut(s)	386, 1428
Bse3DI	GCAATG	1 cut(s)	925
BseBI	CCWGG	2 cut(s)	756, 901
BseCI	ATCGAT	1 cut(s)	990
BseDI	CCNNGG	1 cut(s)	1346
BseGI	GGATG	3 cut(s)	36, 430, 1065
BseLI	CCNNNNNNNGG	3 cut(s)	97, 1082, 1579
BseMI	GCAATG	1 cut(s)	925
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	2 cut(s)	386, 1428
BseRI	GAGGAG	2 cut(s)	165, 168
BseX3I	CGGCCG	1 cut(s)	410
BseXI	GCAGC	9 cut(s)	61, 199, 219, 222, 297, 436, 622, 834, 1073
BsgI	GTGCAG	1 cut(s)	986
Bsh1236I	CGCG	1 cut(s)	350
Bsh1285I	CGRYCG	2 cut(s)	354, 413
BshFI	GGCC	3 cut(s)	71, 101, 412
BshNI	GGYRCC	1 cut(s)	1132
BshVI	ATCGAT	1 cut(s)	990
BsiEI	CGRYCG	2 cut(s)	354, 413
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	371
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	410, 1595
BslI	CCNNNNNNNGG	3 cut(s)	97, 1082, 1579
BsmAI	GTCTC	5 cut(s)	177, 452, 613, 932, 1429
BsmFI	GGGAC	2 cut(s)	410, 1595
BsnI	GGCC	3 cut(s)	71, 101, 412
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	4 cut(s)	316, 351, 894, 1245
Bsp68I	TCGCGA	1 cut(s)	350
BspANI	GGCC	3 cut(s)	71, 101, 412
BspCNI	CTCAG	1 cut(s)	615
BspDI	ATCGAT	1 cut(s)	990
BspFNI	CGCG	1 cut(s)	350
BspHI	TCATGA	1 cut(s)	1078
BspLI	GGNNCC	4 cut(s)	753, 1134, 1294, 1344
BspMAI	CTGCAG	1 cut(s)	824
BspPI	GGATC	1 cut(s)	324
BspQI	GCTCTTC	1 cut(s)	801
BspT107I	GGYRCC	1 cut(s)	1132
BsrBI	CCGCTC	1 cut(s)	1541
BsrDI	GCAATG	1 cut(s)	925
BsrI	ACTGG	2 cut(s)	386, 1428
BssECI	CCNNGG	1 cut(s)	1346
BssMI	GATC	4 cut(s)	316, 351, 894, 1245
BssNI	GRCGYC	4 cut(s)	27, 84, 357, 431
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	1346
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	2 cut(s)	756, 901
Bst4CI	ACNGT	2 cut(s)	326, 1487
Bst6I	CTCTTC	2 cut(s)	495, 801
BstACI	GRCGYC	4 cut(s)	27, 84, 357, 431
BstAPI	GCANNNNNTGC	1 cut(s)	1311
BstBAI	YACGTR	2 cut(s)	842, 1036
BstC8I	GCNNGC	2 cut(s)	240, 906
BstDEI	CTNAG	2 cut(s)	623, 1249
BstF5I	GGATG	3 cut(s)	36, 430, 1065
BstFNI	CGCG	1 cut(s)	350
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	3 cut(s)	54, 145, 285
BstKTI	GATC	4 cut(s)	319, 354, 897, 1248
BstMAI	GTCTC	5 cut(s)	177, 452, 613, 932, 1429
BstMBI	GATC	4 cut(s)	316, 351, 894, 1245
BstMCI	CGRYCG	2 cut(s)	354, 413
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 131, 140, 196, 305, 878, 1311
BstNI	CCWGG	2 cut(s)	756, 901
BstPAI	GACNNNNGTC	1 cut(s)	944
BstSCI	CCNGG	2 cut(s)	754, 899
BstSFI	CTRYAG	2 cut(s)	820, 882
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	9 cut(s)	61, 199, 219, 222, 297, 436, 622, 834, 1073
BstV2I	GAAGAC	1 cut(s)	1167
BstX2I	RGATCY	2 cut(s)	316, 1245
BstYI	RGATCY	2 cut(s)	316, 1245
BstZI	CGGCCG	1 cut(s)	410
Bsu15I	ATCGAT	1 cut(s)	990
BsuRI	GGCC	3 cut(s)	71, 101, 412
BsuTUI	ATCGAT	1 cut(s)	990
BtgZI	GCGATG	3 cut(s)	138, 205, 642
BtrI	CACGTC	4 cut(s)	34, 211, 247, 400
BtsCI	GGATG	3 cut(s)	36, 430, 1065
BtsI	GCAGTG	1 cut(s)	1454
BtsIMutI	CAGTG	3 cut(s)	367, 1421, 1454
BtuMI	TCGCGA	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	240, 906
CciI	TCATGA	1 cut(s)	1078
CfoI	GCGC	3 cut(s)	54, 145, 285
Cfr13I	GGNCC	2 cut(s)	274, 322
ClaI	ATCGAT	1 cut(s)	990
CseI	GACGC	2 cut(s)	92, 420
Csp6I	GTAC	8 cut(s)	162, 193, 268, 403, 420, 478, 1375, 1591
CspCI	CAANNNNNGTGG	4 cut(s)	729, 764, 1484, 1519
CviAII	CATG	4 cut(s)	1079, 1184, 1306, 1468
CviQI	GTAC	8 cut(s)	162, 193, 268, 403, 420, 478, 1375, 1591
DdeI	CTNAG	2 cut(s)	623, 1249
DpnI	GATC	4 cut(s)	318, 353, 896, 1247
DpnII	GATC	4 cut(s)	316, 351, 894, 1245
DraI	TTTAAA	1 cut(s)	865
DraIII	CACNNNGTG	1 cut(s)	845
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	2 cut(s)	69, 410
EagI	CGGCCG	1 cut(s)	410
Eam1104I	CTCTTC	2 cut(s)	495, 801
EarI	CTCTTC	2 cut(s)	495, 801
EciI	GGCGGA	2 cut(s)	257, 470
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	1346
Eco24I	GRGCYC	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	1517
Eco47I	GGWCC	2 cut(s)	274, 322
Eco52I	CGGCCG	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	1436
Eco72I	CACGTG	2 cut(s)	842, 1036
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	754, 899
EcoRV	GATATC	1 cut(s)	1517
EcoT14I	CCWWGG	1 cut(s)	1346
EcoT22I	ATGCAT	1 cut(s)	1307
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	1346
FaeI	CATG	4 cut(s)	1082, 1187, 1309, 1471
FalI	AAGNNNNNCTT	4 cut(s)	780, 812, 1232, 1264
FaqI	GGGAC	2 cut(s)	410, 1595
FatI	CATG	4 cut(s)	1078, 1183, 1305, 1467
FauNDI	CATATG	1 cut(s)	950
FokI	GGATG	3 cut(s)	23, 437, 1072
FriOI	GRGCYC	1 cut(s)	63
FspBI	CTAG	4 cut(s)	80, 561, 779, 1142
GlaI	GCGC	3 cut(s)	53, 144, 284
GsuI	CTGGAG	2 cut(s)	403, 1311
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	71, 101, 412
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	2 cut(s)	92, 420
HhaI	GCGC	3 cut(s)	54, 145, 285
Hin1I	GRCGYC	4 cut(s)	27, 84, 357, 431
Hin1II	CATG	4 cut(s)	1082, 1187, 1309, 1471
Hin6I	GCGC	3 cut(s)	52, 143, 283
HinP1I	GCGC	3 cut(s)	52, 143, 283
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	8 cut(s)	331, 388, 815, 1164, 1172, 1197, 1286, 1437
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	5 cut(s)	520, 595, 626, 857, 889
Hpy166II	GTNNAC	3 cut(s)	31, 403, 784
Hpy188I	TCNGA	3 cut(s)	46, 330, 1096
Hpy188III	TCNNGA	6 cut(s)	320, 335, 349, 441, 1079, 1290
Hpy8I	GTNNAC	3 cut(s)	31, 403, 784
Hpy99I	CGWCG	9 cut(s)	29, 187, 209, 212, 330, 359, 436, 439, 442
HpyAV	CCTTC	8 cut(s)	112, 298, 304, 653, 837, 928, 1234, 1543
HpyCH4III	ACNGT	2 cut(s)	326, 1487
HpyCH4IV	ACGT	9 cut(s)	27, 33, 210, 246, 357, 399, 841, 1035, 1382
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 131, 140, 196, 305, 878, 1311
HpyF3I	CTNAG	2 cut(s)	623, 1249
HpySE526I	ACGT	9 cut(s)	27, 33, 210, 246, 357, 399, 841, 1035, 1382
Hsp92I	GRCGYC	4 cut(s)	27, 84, 357, 431
Hsp92II	CATG	4 cut(s)	1082, 1187, 1309, 1471
HspAI	GCGC	3 cut(s)	52, 143, 283
Kzo9I	GATC	4 cut(s)	316, 351, 894, 1245
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	6 cut(s)	16, 46, 58, 640, 1292, 1538
Lsp1109I	GCAGC	9 cut(s)	61, 199, 219, 222, 297, 436, 622, 834, 1073
MaeI	CTAG	4 cut(s)	80, 561, 779, 1142
MaeII	ACGT	9 cut(s)	27, 33, 210, 246, 357, 399, 841, 1035, 1382
MaeIII	GTNAC	7 cut(s)	362, 554, 697, 1186, 1383, 1419, 1490
MalI	GATC	4 cut(s)	318, 353, 896, 1247
MbiI	CCGCTC	1 cut(s)	1541
MboI	GATC	4 cut(s)	316, 351, 894, 1245
MboII	GAAGA	9 cut(s)	512, 523, 598, 601, 703, 788, 971, 1117, 1167
MflI	RGATCY	2 cut(s)	316, 1245
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	7 cut(s)	537, 768, 809, 866, 1120, 1358, 1390
MlyI	GAGTC	3 cut(s)	1181, 1206, 1431
MmeI	TCCRAC	2 cut(s)	195, 308
Mph1103I	ATGCAT	1 cut(s)	1307
MroXI	GAANNNNTTC	2 cut(s)	982, 1124
MseI	TTAA	5 cut(s)	852, 864, 1053, 1229, 1455
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	756, 901
MvaI	CCWGG	2 cut(s)	756, 901
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	7 cut(s)	58, 131, 140, 196, 305, 878, 1311
NdeI	CATATG	1 cut(s)	950
NdeII	GATC	4 cut(s)	316, 351, 894, 1245
NlaIII	CATG	4 cut(s)	1082, 1187, 1309, 1471
NlaIV	GGNNCC	4 cut(s)	753, 1134, 1294, 1344
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	5 cut(s)	362, 554, 697, 1383, 1419
NruI	TCGCGA	1 cut(s)	350
NsiI	ATGCAT	1 cut(s)	1307
PagI	TCATGA	1 cut(s)	1078
PciSI	GCTCTTC	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	6 cut(s)	90, 201, 276, 285, 354, 428
PdmI	GAANNNNTTC	2 cut(s)	982, 1124
PfeI	GAWTC	5 cut(s)	331, 388, 815, 1164, 1286
Pfl23II	CGTACG	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	1196
PfoI	TCCNGGA	1 cut(s)	754
Ple19I	CGATCG	1 cut(s)	354
PleI	GAGTC	3 cut(s)	1180, 1205, 1431
PmaCI	CACGTG	2 cut(s)	842, 1036
PmlI	CACGTG	2 cut(s)	842, 1036
PpsI	GAGTC	3 cut(s)	1180, 1205, 1431
Ppu21I	YACGTR	2 cut(s)	842, 1036
PshAI	GACNNNNGTC	1 cut(s)	944
PshBI	ATTAAT	1 cut(s)	1229
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	754, 899
PspCI	CACGTG	2 cut(s)	842, 1036
PspGI	CCWGG	2 cut(s)	754, 899
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	4 cut(s)	753, 1134, 1294, 1344
PspPI	GGNCC	2 cut(s)	274, 322
PstI	CTGCAG	1 cut(s)	824
PsuI	RGATCY	2 cut(s)	316, 1245
PsyI	GACNNNGTC	1 cut(s)	1196
PvuI	CGATCG	1 cut(s)	354
RruI	TCGCGA	1 cut(s)	350
RsaI	GTAC	8 cut(s)	163, 194, 269, 404, 421, 479, 1376, 1592
RsaNI	GTAC	8 cut(s)	162, 193, 268, 403, 420, 478, 1375, 1591
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	5 cut(s)	852, 864, 1053, 1229, 1455
Sau3AI	GATC	4 cut(s)	316, 351, 894, 1245
Sau96I	GGNCC	2 cut(s)	274, 322
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	3 cut(s)	1181, 1206, 1431
ScrFI	CCNGG	2 cut(s)	756, 901
SduI	GDGCHC	1 cut(s)	63
SfcI	CTRYAG	2 cut(s)	820, 882
SinI	GGWCC	2 cut(s)	274, 322
SmiI	ATTTAAAT	1 cut(s)	865
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
SpeI	ACTAGT	2 cut(s)	778, 1141
Sse9I	AATT	7 cut(s)	537, 768, 809, 866, 1120, 1358, 1390
SspI	AATATT	2 cut(s)	734, 1105
SspMI	CTAG	4 cut(s)	80, 561, 779, 1142
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	754, 899
StyI	CCWWGG	1 cut(s)	1346
SwaI	ATTTAAAT	1 cut(s)	865
TaaI	ACNGT	2 cut(s)	326, 1487
TaiI	ACGT	9 cut(s)	30, 36, 213, 249, 360, 402, 844, 1038, 1385
TaqI	TCGA	5 cut(s)	93, 354, 579, 976, 990
TasI	AATT	7 cut(s)	537, 768, 809, 866, 1120, 1358, 1390
TatI	WGTACW	3 cut(s)	161, 477, 1590
TauI	GCSGC	4 cut(s)	71, 227, 455, 1447
TfiI	GAWTC	5 cut(s)	331, 388, 815, 1164, 1286
Tru1I	TTAA	5 cut(s)	852, 864, 1053, 1229, 1455
Tru9I	TTAA	5 cut(s)	852, 864, 1053, 1229, 1455
TscAI	CASTG	3 cut(s)	367, 1428, 1454
TseFI	GTSAC	5 cut(s)	362, 554, 697, 1383, 1419
TseI	GCWGC	9 cut(s)	49, 187, 232, 235, 285, 449, 635, 822, 1086
Tsp45I	GTSAC	5 cut(s)	362, 554, 697, 1383, 1419
TspDTI	ATGAA	5 cut(s)	972, 1040, 1169, 1172, 1322
TspGWI	ACGGA	3 cut(s)	29, 171, 437
TspRI	CASTG	3 cut(s)	367, 1428, 1454
Tth111I	GACNNNGTC	1 cut(s)	1196
VpaK11BI	GGWCC	2 cut(s)	274, 322
VspI	ATTAAT	1 cut(s)	1229
XapI	RAATTY	3 cut(s)	809, 866, 1120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmnI	GAANNNNTTC	2 cut(s)	982, 1124
XspI	CTAG	4 cut(s)	80, 561, 779, 1142
ZraI	GACGTC	2 cut(s)	28, 358
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	1307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.