Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

24276471 .. 24279635

Gene Structure 3165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGAAGACCGTACGGACGAAGACAACCTCCGCTCCATTCTCTCCGACCACCTCAGACGCCTCAGGGCGGCCAAAACCCTCGAGTCCGACCACGACATGGCCTTCAATCTCCAACTGCAGGAAGCCATGGCCGCCTCTCTGACTCTCCAACCCCCATCCACCTCCCCACAGACTCTCCACCCTCGCATTCACGACCACAATTTCGTAATCGACCTCACCGACTGGCCGGAAGCCTACTGCACGAACGACGCGTCGTCTTCCTCGTCGAAGGCGGCGGAGGAGGAGAGCGAGTGTTTTAGACTGTATTTCAAGGGGCTTGTAAGCGAGGAGAGGGTCAAGGACATGGATGTCATTGTGGCTGGGGTTGGGGTGGCCGTTTGTGACGCTAGAGATAATCTGATTTTGGAGGCTAAGAAGAATCTGGAGGCGTTTGGTGGTGGTGAGGTTCTGAGCAATGAGGCTGCTGAGCTTGAGGCTCTTATTGAAGGGCTCAGTACAGCTCTCACTCTGGACTTGAGAAATGTCACATATTTCTGTGATAACAACAAGCTTTACCAATATGTTACATACAAAGTGCATCCTGAAAACCTTAAGATTGCGACATTAGTCACTCAAGTTGCTCTTCTACAAAGAAAATTTGAACATTGCACTCCTTCTCTTGTGGAACCTAGTGCCATTAAGTTTGCATTCCAATTTGCAAGAGAGGCTATAGTTTCTCAGATCACCTGGACAGCTAGTAATGGCAAGAGATTCAATGAGACTTGTGTCATTTGTTTTGAAGAAACAGATGTTACTAGAATGTTTTCAATTGAAGGCTGTCTGCACAGGTATTGCTGTAATTGTATGAAACAGCATATTGAAGCAAAGTTGCTTAATGGGAGCATGGTGCAGTGTCCTCATGAAGGCTGTGAGTCTGAAGTGAGTATTGATAGCTGTGAAACATTCTTGGAGCCTAAACTTGTTCAGGTCATGCGCCAACGAATCAGGGAATCTTCTATTCCTGTTACAGAGAAAGTTTACTGTCCAGATCCCAAGTGTTCTGCATTGATGTCAAAAAATGATGTCTTGGAATATACTAAGAATTATTTTGTTGCTGTTGAACAATCTGGAGTCAGGTTATGCATGGAATGTCATCGCTGTTTTTGTATCAATTGCAAAGTTCCATTCGACAATCATACCTGCTATGACTACAAGAAATCAAATCCTTGTGCAGAAGAGCAATTGGTGAAGTCACTGGCTAAAAACAAGCACTGGCGCCAGTGTGTGAACTGCAGCCATATGGTTGAACTTGCAGAAGGTTGTTACCACATAACTTGCAGATGTGGATATGAGTTTTGCTATACTTGTGGAGCTGAATGGAAGGACAAGACACCAACATGTTCCTGCCCAATCTGGGATGAGTGCAACATCATACGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

473

Amino Acids

53.78

Weight (kDa)

5.32

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	120 - 236	4.1e-17	Reverse transcriptase-like
IBR	PF01485	409 - 460	3.2e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	1187
AccB1I	GGYRCC	1 cut(s)	1254
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	33
AccII	CGCG	1 cut(s)	251
AciI	CCGC	5 cut(s)	31, 68, 132, 272, 275
AclWI	GGATC	1 cut(s)	1022
AcoI	YGGCCR	4 cut(s)	69, 129, 224, 372
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	936
AcyI	GRCGYC	2 cut(s)	58, 1255
AfaI	GTAC	2 cut(s)	13, 496
AfiI	CCNNNNNNNGG	5 cut(s)	67, 97, 118, 902, 1393
AflII	CTTAAG	1 cut(s)	590
AflIII	ACRYGT	2 cut(s)	249, 1376
AhdI	GACNNNNNGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	725
AluBI	AGCT	6 cut(s)	469, 500, 550, 734, 933, 1352
AluI	AGCT	6 cut(s)	469, 500, 550, 734, 933, 1352
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	1 cut(s)	1022
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	5 cut(s)	69, 99, 129, 224, 372
ApeKI	GCWGC	2 cut(s)	461, 1272
ApoI	RAATTY	1 cut(s)	635
ArsI	GACNNNNNNTTYG	4 cut(s)	185, 217, 236, 268
Asp700I	GAANNNNTTC	1 cut(s)	802
AspLEI	GCGC	2 cut(s)	975, 1257
AsuHPI	GGTGA	4 cut(s)	208, 452, 715, 1237
AvaI	CYCGRG	1 cut(s)	80
AxyI	CCTNAGG	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	1254
BanII	GRGCYC	1 cut(s)	492
BbsI	GAAGAC	3 cut(s)	12, 27, 249
BbvI	GCAGC	2 cut(s)	448, 1284
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	727
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	4 cut(s)	387, 669, 735, 795
BfmI	CTRYAG	3 cut(s)	116, 708, 1270
BfoI	RGCGCY	1 cut(s)	1258
BfrI	CTTAAG	1 cut(s)	590
BfuAI	ACCTGC	1 cut(s)	1187
BisI	GCNGC	5 cut(s)	69, 132, 273, 462, 1273
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	5 cut(s)	70, 133, 274, 463, 1274
Bme1390I	CCNGG	1 cut(s)	727
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	80
BmiI	GGNNCC	3 cut(s)	666, 951, 1256
BmrFI	CCNGG	1 cut(s)	727
BmsI	GCATC	1 cut(s)	586
BoxI	GACNNNNGTC	2 cut(s)	605, 764
BpiI	GAAGAC	3 cut(s)	12, 27, 249
BpmI	CTGGAG	2 cut(s)	443, 1128
Bpu1102I	GCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	3 cut(s)	491, 535, 597
BsaHI	GRCGYC	2 cut(s)	58, 1255
BsaJI	CCNNGG	1 cut(s)	126
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 47, 159, 189, 275, 305
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 97, 118, 902, 1393
Bse1I	ACTGG	4 cut(s)	227, 1239, 1256, 1258
Bse21I	CCTNAGG	1 cut(s)	62
Bse3DI	GCAATG	2 cut(s)	460, 643
BseBI	CCWGG	1 cut(s)	727
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	4 cut(s)	155, 352, 577, 1402
BseLI	CCNNNNNNNGG	5 cut(s)	67, 97, 118, 902, 1393
BseMI	GCAATG	2 cut(s)	460, 643
BseMII	CTCAG	6 cut(s)	67, 76, 440, 456, 505, 731
BseNI	ACTGG	4 cut(s)	227, 1239, 1256, 1258
BseRI	GAGGAG	3 cut(s)	293, 296, 341
BseXI	GCAGC	2 cut(s)	448, 1284
BseYI	CCCAGC	1 cut(s)	359
BsgI	GTGCAG	4 cut(s)	223, 806, 908, 1230
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	5 cut(s)	71, 101, 131, 226, 374
BshNI	GGYRCC	1 cut(s)	1254
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	227
BsiWI	CGTACG	1 cut(s)	11
BslI	CCNNNNNNNGG	5 cut(s)	67, 97, 118, 902, 1393
BsmAI	GTCTC	1 cut(s)	752
BsmI	GAATGC	2 cut(s)	186, 686
BsnI	GGCC	5 cut(s)	71, 101, 131, 226, 374
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	720, 1027
Bsp1720I	GCTNAGC	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	5 cut(s)	31, 68, 132, 272, 275
BspANI	GGCC	5 cut(s)	71, 101, 131, 226, 374
BspCNI	CTCAG	6 cut(s)	66, 75, 441, 457, 504, 730
BspFNI	CGCG	1 cut(s)	251
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	3 cut(s)	666, 951, 1256
BspMAI	CTGCAG	2 cut(s)	120, 1274
BspMI	ACCTGC	1 cut(s)	1187
BspPI	GGATC	1 cut(s)	1022
BspQI	GCTCTTC	2 cut(s)	627, 1209
BspT107I	GGYRCC	1 cut(s)	1254
BspTI	CTTAAG	1 cut(s)	590
BsrBI	CCGCTC	1 cut(s)	33
BsrDI	GCAATG	2 cut(s)	460, 643
BsrI	ACTGG	4 cut(s)	227, 1239, 1256, 1258
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	720, 1027
BssNI	GRCGYC	2 cut(s)	58, 1255
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	727
Bst4CI	ACNGT	3 cut(s)	11, 303, 1022
Bst6I	CTCTTC	2 cut(s)	627, 1209
BstACI	GRCGYC	2 cut(s)	58, 1255
BstAFI	CTTAAG	1 cut(s)	590
BstDEI	CTNAG	8 cut(s)	53, 62, 411, 449, 465, 491, 717, 1077
BstDSI	CCRYGG	1 cut(s)	126
BstENI	CCTNNNNNAGG	1 cut(s)	900
BstF5I	GGATG	4 cut(s)	155, 352, 577, 1402
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	1258
BstHHI	GCGC	2 cut(s)	975, 1257
BstKTI	GATC	2 cut(s)	723, 1030
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	2 cut(s)	720, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 704
BstNI	CCWGG	1 cut(s)	727
BstNSI	RCATGY	1 cut(s)	1380
BstPAI	GACNNNNGTC	2 cut(s)	605, 764
BstSCI	CCNGG	1 cut(s)	725
BstSFI	CTRYAG	3 cut(s)	116, 708, 1270
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	448, 1284
BstV2I	GAAGAC	3 cut(s)	12, 27, 249
BstX2I	RGATCY	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	1027
Bsu36I	CCTNAGG	1 cut(s)	62
BsuRI	GGCC	5 cut(s)	71, 101, 131, 226, 374
BtgI	CCRYGG	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	1118
BtsCI	GGATG	4 cut(s)	155, 352, 577, 1402
BtsI	GCAGTG	1 cut(s)	896
BtsIMutI	CAGTG	4 cut(s)	896, 1232, 1249, 1265
BveI	ACCTGC	1 cut(s)	1187
CciI	TCATGA	1 cut(s)	898
CfoI	GCGC	2 cut(s)	975, 1257
CseI	GACGC	4 cut(s)	66, 240, 257, 392
Csp6I	GTAC	2 cut(s)	12, 495
CspCI	CAANNNNNGTGG	2 cut(s)	1295, 1330
CviAII	CATG	8 cut(s)	97, 127, 343, 883, 899, 970, 1123, 1377
CviQI	GTAC	2 cut(s)	12, 495
DdeI	CTNAG	8 cut(s)	53, 62, 411, 449, 465, 491, 717, 1077
DinI	GGCGCC	1 cut(s)	1256
DpnI	GATC	2 cut(s)	722, 1029
DpnII	GATC	2 cut(s)	720, 1027
DrdI	GACNNNNNNGTC	1 cut(s)	347
DriI	GACNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	347
EaeI	YGGCCR	4 cut(s)	69, 129, 224, 372
Eam1104I	CTCTTC	2 cut(s)	627, 1209
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EarI	CTCTTC	2 cut(s)	627, 1209
EciI	GGCGGA	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	936
Eco81I	CCTNAGG	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	900
EcoRII	CCWGG	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	1124
EcoT38I	GRGCYC	1 cut(s)	492
EgeI	GGCGCC	1 cut(s)	1256
EheI	GGCGCC	1 cut(s)	1256
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	8 cut(s)	100, 130, 346, 886, 902, 973, 1126, 1380
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FatI	CATG	8 cut(s)	96, 126, 342, 882, 898, 969, 1122, 1376
FauNDI	CATATG	1 cut(s)	1278
Fnu4HI	GCNGC	5 cut(s)	69, 132, 273, 462, 1273
FokI	GGATG	4 cut(s)	142, 359, 564, 1409
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	5 cut(s)	69, 132, 273, 462, 1273
FspBI	CTAG	4 cut(s)	387, 669, 735, 795
GlaI	GCGC	2 cut(s)	974, 1256
GluI	GCNGC	5 cut(s)	69, 132, 273, 462, 1273
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	2 cut(s)	443, 1128
HaeII	RGCGCY	1 cut(s)	1258
HaeIII	GGCC	5 cut(s)	71, 101, 131, 226, 374
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	4 cut(s)	66, 240, 257, 392
HhaI	GCGC	2 cut(s)	975, 1257
Hin1I	GRCGYC	2 cut(s)	58, 1255
Hin1II	CATG	8 cut(s)	100, 130, 346, 886, 902, 973, 1126, 1380
Hin6I	GCGC	2 cut(s)	973, 1255
HinP1I	GCGC	2 cut(s)	973, 1255
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	9 cut(s)	83, 142, 172, 418, 750, 911, 981, 989, 1110
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	4 cut(s)	208, 452, 715, 1237
Hpy166II	GTNNAC	2 cut(s)	1018, 1267
Hpy188I	TCNGA	8 cut(s)	46, 56, 88, 141, 399, 450, 720, 916
Hpy188III	TCNNGA	7 cut(s)	191, 422, 509, 581, 899, 1025, 1107
Hpy8I	GTNNAC	2 cut(s)	1018, 1267
Hpy99I	CGWCG	3 cut(s)	251, 256, 268
HpyAV	CCTTC	8 cut(s)	112, 262, 479, 663, 806, 896, 1289, 1354
HpyCH4III	ACNGT	3 cut(s)	11, 303, 1022
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 704
HpyF3I	CTNAG	8 cut(s)	53, 62, 411, 449, 465, 491, 717, 1077
Hsp92I	GRCGYC	2 cut(s)	58, 1255
Hsp92II	CATG	8 cut(s)	100, 130, 346, 886, 902, 973, 1126, 1380
HspAI	GCGC	2 cut(s)	973, 1255
KasI	GGCGCC	1 cut(s)	1254
Kzo9I	GATC	2 cut(s)	720, 1027
LguI	GCTCTTC	2 cut(s)	627, 1209
LmnI	GCTCC	4 cut(s)	38, 879, 949, 1349
Lsp1109I	GCAGC	2 cut(s)	448, 1284
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	4 cut(s)	387, 669, 735, 795
MaeIII	GTNAC	8 cut(s)	380, 523, 562, 607, 790, 1003, 1230, 1301
MalI	GATC	2 cut(s)	722, 1029
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	2 cut(s)	720, 1027
MboII	GAAGA	8 cut(s)	17, 32, 249, 427, 614, 791, 984, 1226
MfeI	CAATTG	3 cut(s)	807, 1150, 1220
MflI	RGATCY	1 cut(s)	1027
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	8 cut(s)	199, 635, 692, 807, 838, 1081, 1150, 1220
MluI	ACGCGT	1 cut(s)	249
Mly113I	GGCGCC	1 cut(s)	1255
MlyI	GAGTC	5 cut(s)	92, 136, 166, 920, 1119
MmeI	TCCRAC	4 cut(s)	69, 111, 136, 172
Mph1103I	ATGCAT	1 cut(s)	1124
MroXI	GAANNNNTTC	1 cut(s)	802
MseI	TTAA	3 cut(s)	591, 678, 873
MslI	CAYNNNNRTG	1 cut(s)	1375
MspCI	CTTAAG	1 cut(s)	590
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	727
MunI	CAATTG	3 cut(s)	807, 1150, 1220
Mva1269I	GAATGC	2 cut(s)	186, 686
MvaI	CCWGG	1 cut(s)	727
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	131, 704
NarI	GGCGCC	1 cut(s)	1255
NcoI	CCATGG	1 cut(s)	126
NdeI	CATATG	1 cut(s)	1278
NdeII	GATC	2 cut(s)	720, 1027
NlaIII	CATG	8 cut(s)	100, 130, 346, 886, 902, 973, 1126, 1380
NlaIV	GGNNCC	3 cut(s)	666, 951, 1256
NmuCI	GTSAC	4 cut(s)	380, 523, 607, 1230
NsiI	ATGCAT	1 cut(s)	1124
NspI	RCATGY	1 cut(s)	1380
PaeR7I	CTCGAG	1 cut(s)	80
PagI	TCATGA	1 cut(s)	898
PciI	ACATGT	1 cut(s)	1376
PciSI	GCTCTTC	2 cut(s)	627, 1209
PcsI	WCGNNNNNNNCGW	3 cut(s)	216, 248, 260
PctI	GAATGC	2 cut(s)	186, 686
PdmI	GAANNNNTTC	1 cut(s)	802
PfeI	GAWTC	4 cut(s)	418, 750, 981, 989
Pfl23II	CGTACG	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	97
PkrI	GCNGC	5 cut(s)	70, 133, 274, 463, 1274
PleI	GAGTC	5 cut(s)	91, 136, 166, 919, 1118
PluTI	GGCGCC	1 cut(s)	1258
PpsI	GAGTC	5 cut(s)	91, 136, 166, 919, 1118
PscI	ACATGT	1 cut(s)	1376
PshAI	GACNNNNGTC	2 cut(s)	605, 764
Psp6I	CCWGG	1 cut(s)	725
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	725
PspLI	CGTACG	1 cut(s)	11
PspN4I	GGNNCC	3 cut(s)	666, 951, 1256
PspXI	VCTCGAGB	1 cut(s)	80
PstI	CTGCAG	2 cut(s)	120, 1274
PsuI	RGATCY	1 cut(s)	1027
RsaI	GTAC	2 cut(s)	13, 496
RsaNI	GTAC	2 cut(s)	12, 495
RseI	CAYNNNNRTG	1 cut(s)	1375
SapI	GCTCTTC	2 cut(s)	627, 1209
SaqAI	TTAA	3 cut(s)	591, 678, 873
SatI	GCNGC	5 cut(s)	69, 132, 273, 462, 1273
Sau3AI	GATC	2 cut(s)	720, 1027
SchI	GAGTC	5 cut(s)	92, 136, 166, 920, 1119
ScrFI	CCNGG	1 cut(s)	727
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	1 cut(s)	586
SfcI	CTRYAG	3 cut(s)	116, 708, 1270
SfoI	GGCGCC	1 cut(s)	1256
Sfr274I	CTCGAG	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	1375
SmlI	CTYRAG	5 cut(s)	80, 470, 514, 590, 612
SmoI	CTYRAG	5 cut(s)	80, 470, 514, 590, 612
Sse9I	AATT	8 cut(s)	199, 635, 692, 807, 838, 1081, 1150, 1220
SsiI	CCGC	5 cut(s)	31, 68, 132, 272, 275
SspDI	GGCGCC	1 cut(s)	1254
SspMI	CTAG	4 cut(s)	387, 669, 735, 795
StyD4I	CCNGG	1 cut(s)	725
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	3 cut(s)	11, 303, 1022
TaqI	TCGA	4 cut(s)	81, 210, 266, 1167
TasI	AATT	8 cut(s)	199, 635, 692, 807, 838, 1081, 1150, 1220
TatI	WGTACW	1 cut(s)	494
TauI	GCSGC	3 cut(s)	71, 134, 275
TfiI	GAWTC	4 cut(s)	418, 750, 981, 989
Tru1I	TTAA	3 cut(s)	591, 678, 873
Tru9I	TTAA	3 cut(s)	591, 678, 873
TscAI	CASTG	4 cut(s)	896, 1239, 1256, 1265
TseFI	GTSAC	4 cut(s)	380, 523, 607, 1230
TseI	GCWGC	2 cut(s)	461, 1272
Tsp45I	GTSAC	4 cut(s)	380, 523, 607, 1230
TspDTI	ATGAA	2 cut(s)	860, 915
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	4 cut(s)	896, 1239, 1256, 1265
Van91I	CCANNNNNTGG	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	590
XagI	CCTNNNNNAGG	1 cut(s)	900
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	1 cut(s)	1380
XhoI	CTCGAG	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	802
XspI	CTAG	4 cut(s)	387, 669, 735, 795
Zsp2I	ATGCAT	1 cut(s)	1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.