Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

11555768 .. 11567031

Gene Structure 11264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1125600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

ATGCGGAAAGCCAGAGAGGATCTCGAGCGTCGGATTCAGGACGATCAGGTCGCGAGGGAGATCATGAGGATTCCGGAGGAGGAGTGGGAGGAGTCCGGCGAATTCTTCTCCAAGCCGTTCGGCGAAGGATCATCCTCGTCGTCAGCGTCGGCGAAGAGCGTCGAGGGCGAGAGCGTATTCAGGCTATACTTCAAGGGTTTGGTGAGCGAGGAAAGGGTTGGGAAGGAGAGGGCGGCACTGGCAGGAATTGGGGTGGCGCTGTGCGATCCAAGGGACAATTTGTTGTTCGAGGTCAGGAAGCCGCTGATTGGGAGCGGGACGAGCAGCAGTGGGGCCCAGCTGAAGGCCTTGATCGAAGGGCTGAATGCTGCTCTTGCTTTGGATTTGAAGCGCCTCACCTTCTTCTGTGAGAATCGCCACATTTTCCAGTTTATAACTGGTAAATGGACAGCAAAGCAGCGCAAGGTAGCAATGCTTGTCAGTCAGGTTAAGAGCCTTCAAGCAAAGTTTGCAGTTTGCAACCCAATGCTTGTGCCCCGATTTGATATTAAATTTGCATTTAAACTAGCAAGAGATGCAATAGATTCTCAGTCTCAGACTAATCAGTCTGCACAATCTATCACTTCCAAGAATGTGAATGAGACTTGCGTGATATGTTTGGAAGCTACTGATGTTAACCAAATGTTTTCGGTTGATGGCTGCCTGCATCGGTATTGCTTTTCTTGTATGAAGCAACATGTAGAGGTGAAGTTGCTTCATGGGATGATTCCTAGATGCCCTCATGAAGACTGTAAGTCTGATCTTACTGTTGATAGTTGTGCAAAATTCTTGACACCGAAACATGTGGAGACCATGCGCCAACGCATAAAGGAAGCTTCAATTCCTGCCACAGAGAAAGTTTATTGCCCGTACCCAAGGTGCTCCGCTTTAATGTCAAAACATGAACTTTTACAAGACGTGAAATCGCGGGATGTGGAATTATCAGGAGTTCGAAAATGCTTGAAATGTCAGTGCCTTTTTTGTATCAACTGTAAAGTCCCTTGGCACAGAAACAGAACATGCACCGACTACAAAAGGTTGACTCCTCATCCCTCAGAAGATACAAAGCTAAAGTCTCTTGCCTCAACGAATCTGTGGCGCCAGTGTGTGAAGTGCAACCATATGATTGAACTTGCTGAAGGTTGCTACCACATGACTTGCAGGTGCGGGCATGAGTTTTGTTATAATTGTGGAGGCGAGTGGAAAGACAAAAAGGCAACATGCTCATGCCCACTATGGGATGAGGGTAATATTTTGTATGATGAAGATGATGAAGATTTTGATTTTGATGAAGAGGATGTGTTAGAGTCAGATTCTGAGAGACATGCTCCTTGGTTTTGCTATGACTGTGGACAGTCTACGGACTACATGGGAGCATGTTTATGCCCAGTTTTGTTTGAAGATGATATCTTGTTTGACGGAGATAGTGATACTCAGGAGTTGAAGAAAGATGAATATGAAGGTGAAGTTGAGGATGAAGGCCTAGAAGAAGACGGATATGAAGATGAAAGTGGGCAGGAGGTTCAGGAAGAGAAGCATATCTTGCCTGCTGAAGATGGTAGAGATCTTGATGAAGAATACGAGGAAGATGAGGAATTCTGTGACTCTGACTGCGAATGCTATGAAGATGAGGTTCATGAGAAAGAGGTTCGAGAGGATGTTCAGGATGAATGGTTGGAGCAAGGGCAGGAAGATGAGAACTTCTATGCGGAAAATGATATAGATTTTGGTGACGAATATGAGGAAGATGAAGAGGAGTACTGGGACTCTGACTATGAATATGAAGAGGAAGGATTTGAAGATGAAAGCGGGGAGGAGGAGGTTCAGGAAGAGAATAATATCTTGCCTGCTGAAGATGGTAGAGATCTTGATGAAGAATGTGTGGAGGATGAGGAGTTCTGTGACTCTGACTGCGAATGCTATGAAGATGAAGTTCATGAGAAAGAGGTTCGAGAGGACGTTCAGGATGAATGGTTGGAGCAAGGTCAGGAAGTTGAGAACTTTTATGCGGAAAATGATACTGATTTTGGTGACGGATATGAGGAAGATGAAGAGTACTGTGACTTTGGCTGCGACCGCGACAGTGACTGCTACGACTCTAACTCAGATTATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

719

Amino Acids

82.99

Weight (kDa)

4.27

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	76 - 193	4.4e-23	Reverse transcriptase-like
IBR	PF01485	296 - 354	4.4e-09	IBR domain, a half RING-finger domain
IBR	PF01485	368 - 421	7.5e-08	IBR domain, a half RING-finger domain
IBR_1	PF22191	381 - 418	2.3e-07	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	434, 1224
AarI	CACCTGC	1 cut(s)	1191
AasI	GACNNNNNNGTC	2 cut(s)	47, 604
Acc36I	ACCTGC	1 cut(s)	1191
AccB1I	GGYRCC	1 cut(s)	1137
AccBSI	CCGCTC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	1397
AccII	CGCG	3 cut(s)	53, 967, 2118
AccIII	TCCGGA	1 cut(s)	73
AclWI	GGATC	3 cut(s)	27, 136, 260
AcsI	RAATTY	4 cut(s)	101, 551, 824, 1634
AcuI	CTGAAG	4 cut(s)	362, 1197, 1611, 1911
AcyI	GRCGYC	1 cut(s)	1138
AfaI	GTAC	3 cut(s)	911, 1799, 2096
AfiI	CCNNNNNNNGG	3 cut(s)	308, 343, 1276
AflIII	ACRYGT	2 cut(s)	736, 841
AgsI	TTSAA	9 cut(s)	193, 388, 500, 879, 1003, 1169, 1439, 1483, 1838
AhdI	GACNNNNNGTC	1 cut(s)	793
AjiI	CACGTC	1 cut(s)	958
AloI	GAACNNNNNNTCC	2 cut(s)	1919, 1951
AluBI	AGCT	4 cut(s)	340, 665, 875, 1108
AluI	AGCT	4 cut(s)	340, 665, 875, 1108
Alw21I	GWGCWC	1 cut(s)	923
Alw26I	GTCTC	5 cut(s)	597, 635, 842, 1119, 1354
AlwI	GGATC	3 cut(s)	27, 136, 260
AlwNI	CAGNNNCTG	2 cut(s)	1355, 2127
Ama87I	CYCGRG	1 cut(s)	23
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	3 cut(s)	333, 345, 1519
ApaI	GGGCCC	1 cut(s)	337
ApeKI	GCWGC	5 cut(s)	324, 368, 457, 699, 2109
ApoI	RAATTY	4 cut(s)	101, 551, 824, 1634
ArsI	GACNNNNNNTTYG	2 cut(s)	1097, 1129
AspLEI	GCGC	5 cut(s)	259, 393, 462, 858, 1140
AspS9I	GGNCC	2 cut(s)	333, 334
AsuHPI	GGTGA	6 cut(s)	214, 388, 757, 1514, 1781, 2081
AsuII	TTCGAA	1 cut(s)	991
AvaI	CYCGRG	1 cut(s)	23
BaeGI	GKGCMC	2 cut(s)	337, 537
BanI	GGYRCC	1 cut(s)	1137
BanII	GRGCYC	1 cut(s)	337
BbsI	GAAGAC	2 cut(s)	792, 1536
Bbv12I	GWGCWC	1 cut(s)	923
BbvI	GCAGC	5 cut(s)	336, 355, 469, 686, 2096
BccI	CCATC	3 cut(s)	689, 1589, 1889
BceAI	ACGGC	1 cut(s)	100
BcoDI	GTCTC	5 cut(s)	597, 635, 842, 1119, 1354
BfaI	CTAG	3 cut(s)	566, 771, 1523
BfoI	RGCGCY	3 cut(s)	260, 394, 1141
BfuAI	ACCTGC	1 cut(s)	1191
BglII	AGATCT	2 cut(s)	1603, 1903
BisI	GCNGC	7 cut(s)	234, 302, 325, 369, 458, 700, 2110
BlsI	GCNGC	7 cut(s)	235, 303, 326, 370, 459, 701, 2111
BmcAI	AGTACT	2 cut(s)	1799, 2096
BmeRI	GACNNNNNGTC	1 cut(s)	793
BmeT110I	CYCGRG	1 cut(s)	23
BmgBI	CACGTC	1 cut(s)	958
BmgT120I	GGNCC	2 cut(s)	333, 334
BmiI	GGNNCC	3 cut(s)	334, 335, 1139
BmrI	ACTGGG	2 cut(s)	1421, 1810
BmsI	GCATC	3 cut(s)	565, 715, 764
BmuI	ACTGGG	2 cut(s)	1421, 1810
BpiI	GAAGAC	2 cut(s)	792, 1536
BplI	GAGNNNNNCTC	3 cut(s)	38, 1351, 1383
Bpu14I	TTCGAA	1 cut(s)	991
BsaHI	GRCGYC	1 cut(s)	1138
BsaI	GGTCTC	1 cut(s)	842
BsaJI	CCNNGG	4 cut(s)	269, 914, 1040, 1370
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 343, 1276
Bse1I	ACTGG	6 cut(s)	243, 427, 442, 1141, 1427, 1805
Bse3DI	GCAATG	1 cut(s)	477
BseAI	TCCGGA	1 cut(s)	73
BseDI	CCNNGG	4 cut(s)	269, 914, 1040, 1370
BseLI	CCNNNNNNNGG	3 cut(s)	308, 343, 1276
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	6 cut(s)	602, 608, 1107, 1347, 1487, 2157
BseNI	ACTGG	6 cut(s)	243, 427, 442, 1141, 1427, 1805
BseRI	GAGGAG	8 cut(s)	92, 95, 104, 1074, 1808, 1868, 1871, 1946
BseSI	GKGCMC	2 cut(s)	337, 537
BseXI	GCAGC	5 cut(s)	336, 355, 469, 686, 2096
BseYI	CCCAGC	1 cut(s)	336
BsgI	GTGCAG	1 cut(s)	594
Bsh1236I	CGCG	3 cut(s)	53, 967, 2118
Bsh1285I	CGRYCG	1 cut(s)	2116
BshFI	GGCC	3 cut(s)	335, 347, 1521
BshNI	GGYRCC	1 cut(s)	1137
BsiEI	CGRYCG	1 cut(s)	2116
BsiHKAI	GWGCWC	1 cut(s)	923
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	74, 96
BslFI	GGGAC	4 cut(s)	287, 331, 1022, 1817
BslI	CCNNNNNNNGG	3 cut(s)	308, 343, 1276
BsmAI	GTCTC	5 cut(s)	597, 635, 842, 1119, 1354
BsmFI	GGGAC	4 cut(s)	287, 331, 1022, 1817
BsmI	GAATGC	3 cut(s)	370, 1661, 1961
BsnI	GGCC	3 cut(s)	335, 347, 1521
Bso31I	GGTCTC	1 cut(s)	842
BsoBI	CYCGRG	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	991
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	3 cut(s)	337, 537, 923
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	9 cut(s)	19, 43, 60, 128, 265, 351, 799, 1603, 1903
Bsp68I	TCGCGA	1 cut(s)	53
BspANI	GGCC	3 cut(s)	335, 347, 1521
BspCNI	CTCAG	6 cut(s)	601, 607, 1106, 1348, 1486, 2156
BspEI	TCCGGA	1 cut(s)	73
BspFNI	CGCG	3 cut(s)	53, 967, 2118
BspHI	TCATGA	4 cut(s)	63, 781, 1675, 1975
BspLI	GGNNCC	3 cut(s)	334, 335, 1139
BspMI	ACCTGC	1 cut(s)	1191
BspPI	GGATC	3 cut(s)	27, 136, 260
BspQI	GCTCTTC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	991
BspT107I	GGYRCC	1 cut(s)	1137
BspTNI	GGTCTC	1 cut(s)	842
BsrBI	CCGCTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	6 cut(s)	243, 427, 442, 1141, 1427, 1805
BssECI	CCNNGG	4 cut(s)	269, 914, 1040, 1370
BssMI	GATC	9 cut(s)	19, 43, 60, 128, 265, 351, 799, 1603, 1903
BssNI	GRCGYC	1 cut(s)	1138
BssT1I	CCWWGG	4 cut(s)	269, 914, 1040, 1370
Bst4CI	ACNGT	7 cut(s)	791, 808, 1031, 1388, 1395, 2099, 2123
Bst6I	CTCTTC	7 cut(s)	149, 1326, 1563, 1785, 1818, 1863, 2085
BstACI	GRCGYC	1 cut(s)	1138
BstAPI	GCANNNNNTGC	3 cut(s)	509, 575, 1582
BstBI	TTCGAA	1 cut(s)	991
BstC8I	GCNNGC	4 cut(s)	704, 1208, 1587, 1887
BstDEI	CTNAG	6 cut(s)	588, 594, 1093, 1356, 1473, 2143
BstFNI	CGCG	3 cut(s)	53, 967, 2118
BstH2I	RGCGCY	3 cut(s)	260, 394, 1141
BstHHI	GCGC	5 cut(s)	259, 393, 462, 858, 1140
BstKTI	GATC	9 cut(s)	22, 46, 63, 131, 268, 354, 802, 1606, 1906
BstMAI	GTCTC	5 cut(s)	597, 635, 842, 1119, 1354
BstMBI	GATC	9 cut(s)	19, 43, 60, 128, 265, 351, 799, 1603, 1903
BstMCI	CGRYCG	1 cut(s)	2116
BstMWI	GCNNNNNNNGC	8 cut(s)	165, 239, 321, 374, 509, 575, 1582, 2115
BstNSI	RCATGY	6 cut(s)	740, 845, 1062, 1263, 1367, 1419
BstSLI	GKGCMC	2 cut(s)	337, 537
BstUI	CGCG	3 cut(s)	53, 967, 2118
BstV1I	GCAGC	5 cut(s)	336, 355, 469, 686, 2096
BstV2I	GAAGAC	2 cut(s)	792, 1536
BstX2I	RGATCY	3 cut(s)	19, 1603, 1903
BstYI	RGATCY	3 cut(s)	19, 1603, 1903
BsuRI	GGCC	3 cut(s)	335, 347, 1521
BtrI	CACGTC	1 cut(s)	958
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	5 cut(s)	236, 334, 1016, 1148, 2128
BtuMI	TCGCGA	1 cut(s)	53
BveI	ACCTGC	1 cut(s)	1191
Cac8I	GCNNGC	4 cut(s)	704, 1208, 1587, 1887
CaiI	CAGNNNCTG	2 cut(s)	1355, 2127
CciI	TCATGA	4 cut(s)	63, 781, 1675, 1975
CfoI	GCGC	5 cut(s)	259, 393, 462, 858, 1140
Cfr13I	GGNCC	2 cut(s)	333, 334
CseI	GACGC	3 cut(s)	17, 135, 148
Csp6I	GTAC	3 cut(s)	910, 1798, 2095
CspCI	CAANNNNNGTGG	2 cut(s)	1178, 1213
CviQI	GTAC	3 cut(s)	910, 1798, 2095
DdeI	CTNAG	6 cut(s)	588, 594, 1093, 1356, 1473, 2143
DinI	GGCGCC	1 cut(s)	1139
DpnI	GATC	9 cut(s)	21, 45, 62, 130, 267, 353, 801, 1605, 1905
DpnII	GATC	9 cut(s)	19, 43, 60, 128, 265, 351, 799, 1603, 1903
DraI	TTTAAA	1 cut(s)	562
DrdI	GACNNNNNNGTC	2 cut(s)	47, 604
DriI	GACNNNNNGTC	1 cut(s)	793
DseDI	GACNNNNNNGTC	2 cut(s)	47, 604
Eam1104I	CTCTTC	7 cut(s)	149, 1326, 1563, 1785, 1818, 1863, 2085
Eam1105I	GACNNNNNGTC	1 cut(s)	793
EarI	CTCTTC	7 cut(s)	149, 1326, 1563, 1785, 1818, 1863, 2085
Eco130I	CCWWGG	4 cut(s)	269, 914, 1040, 1370
Eco147I	AGGCCT	2 cut(s)	347, 1521
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	842
Eco32I	GATATC	1 cut(s)	1447
Eco57I	CTGAAG	4 cut(s)	362, 1197, 1611, 1911
Eco88I	CYCGRG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRI	GAATTC	2 cut(s)	101, 1634
EcoRV	GATATC	1 cut(s)	1447
EcoT14I	CCWWGG	4 cut(s)	269, 914, 1040, 1370
EcoT38I	GRGCYC	1 cut(s)	337
EgeI	GGCGCC	1 cut(s)	1139
EheI	GGCGCC	1 cut(s)	1139
ErhI	CCWWGG	4 cut(s)	269, 914, 1040, 1370
FalI	AAGNNNNNCTT	2 cut(s)	1565, 1597
FaqI	GGGAC	4 cut(s)	287, 331, 1022, 1817
FauI	CCCGC	4 cut(s)	308, 960, 1199, 1841
FauNDI	CATATG	1 cut(s)	1161
FblI	GTMKAC	1 cut(s)	1397
Fnu4HI	GCNGC	7 cut(s)	234, 302, 325, 369, 458, 700, 2110
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	7 cut(s)	234, 302, 325, 369, 458, 700, 2110
FspBI	CTAG	3 cut(s)	566, 771, 1523
GlaI	GCGC	5 cut(s)	258, 392, 461, 857, 1139
GluI	GCNGC	7 cut(s)	234, 302, 325, 369, 458, 700, 2110
GsaI	CCCAGC	1 cut(s)	340
HaeII	RGCGCY	3 cut(s)	260, 394, 1141
HaeIII	GGCC	3 cut(s)	335, 347, 1521
HapII	CCGG	2 cut(s)	74, 96
HgaI	GACGC	3 cut(s)	17, 135, 148
HhaI	GCGC	5 cut(s)	259, 393, 462, 858, 1140
Hin1I	GRCGYC	1 cut(s)	1138
Hin6I	GCGC	5 cut(s)	257, 391, 460, 856, 1138
HinP1I	GCGC	5 cut(s)	257, 391, 460, 856, 1138
HincII	GTYRAC	2 cut(s)	676, 1080
HindII	GTYRAC	2 cut(s)	676, 1080
HindIII	AAGCTT	1 cut(s)	873
HpaI	GTTAAC	1 cut(s)	676
HpaII	CCGG	2 cut(s)	74, 96
HphI	GGTGA	6 cut(s)	214, 388, 757, 1514, 1781, 2081
Hpy166II	GTNNAC	4 cut(s)	676, 1080, 1391, 1398
Hpy8I	GTNNAC	4 cut(s)	676, 1080, 1391, 1398
Hpy99I	CGWCG	4 cut(s)	33, 142, 151, 164
HpyCH4III	ACNGT	7 cut(s)	791, 808, 1031, 1388, 1395, 2099, 2123
HpyCH4IV	ACGT	2 cut(s)	957, 1998
HpyF10VI	GCNNNNNNNGC	8 cut(s)	165, 239, 321, 374, 509, 575, 1582, 2115
HpyF3I	CTNAG	6 cut(s)	588, 594, 1093, 1356, 1473, 2143
HpySE526I	ACGT	2 cut(s)	957, 1998
Hsp92I	GRCGYC	1 cut(s)	1138
HspAI	GCGC	5 cut(s)	257, 391, 460, 856, 1138
KasI	GGCGCC	1 cut(s)	1137
Kpn2I	TCCGGA	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	676
Kzo9I	GATC	9 cut(s)	19, 43, 60, 128, 265, 351, 799, 1603, 1903
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	6 cut(s)	312, 926, 1372, 1412, 1717, 2017
Lsp1109I	GCAGC	5 cut(s)	336, 355, 469, 686, 2096
LweI	GCATC	3 cut(s)	565, 715, 764
MaeI	CTAG	3 cut(s)	566, 771, 1523
MaeII	ACGT	2 cut(s)	957, 1998
MaeIII	GTNAC	6 cut(s)	1640, 1769, 1940, 2069, 2099, 2123
MalI	GATC	9 cut(s)	21, 45, 62, 130, 267, 353, 801, 1605, 1905
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	9 cut(s)	19, 43, 60, 128, 265, 351, 799, 1603, 1903
MflI	RGATCY	3 cut(s)	19, 1603, 1903
MhlI	GDGCHC	3 cut(s)	337, 537, 923
MluCI	AATT	9 cut(s)	101, 246, 277, 551, 824, 879, 977, 1225, 1634
Mly113I	GGCGCC	1 cut(s)	1138
MlyI	GAGTC	7 cut(s)	101, 1075, 1355, 1637, 1799, 1937, 2129
MmeI	TCCRAC	3 cut(s)	11, 1695, 1995
MroI	TCCGGA	1 cut(s)	73
MseI	TTAA	5 cut(s)	489, 549, 561, 675, 929
MslI	CAYNNNNRTG	2 cut(s)	1264, 1420
MspA1I	CMGCKG	2 cut(s)	304, 340
MspI	CCGG	2 cut(s)	74, 96
Mva1269I	GAATGC	3 cut(s)	370, 1661, 1961
MvnI	CGCG	3 cut(s)	53, 967, 2118
MwoI	GCNNNNNNNGC	8 cut(s)	165, 239, 321, 374, 509, 575, 1582, 2115
NarI	GGCGCC	1 cut(s)	1138
NdeI	CATATG	1 cut(s)	1161
NdeII	GATC	9 cut(s)	19, 43, 60, 128, 265, 351, 799, 1603, 1903
NlaIV	GGNNCC	3 cut(s)	334, 335, 1139
NmuCI	GTSAC	6 cut(s)	1640, 1769, 1940, 2069, 2099, 2123
NruI	TCGCGA	1 cut(s)	53
NspI	RCATGY	6 cut(s)	740, 845, 1062, 1263, 1367, 1419
NspV	TTCGAA	1 cut(s)	991
PaeR7I	CTCGAG	1 cut(s)	23
PagI	TCATGA	4 cut(s)	63, 781, 1675, 1975
PaqCI	CACCTGC	1 cut(s)	1191
PceI	AGGCCT	2 cut(s)	347, 1521
PciI	ACATGT	2 cut(s)	736, 841
PciSI	GCTCTTC	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PctI	GAATGC	3 cut(s)	370, 1661, 1961
PfeI	GAWTC	7 cut(s)	34, 70, 412, 584, 766, 1129, 1352
PkrI	GCNGC	7 cut(s)	235, 303, 326, 370, 459, 701, 2111
PleI	GAGTC	7 cut(s)	100, 1075, 1354, 1637, 1799, 1937, 2129
PluTI	GGCGCC	1 cut(s)	1141
PpsI	GAGTC	7 cut(s)	100, 1075, 1354, 1637, 1799, 1937, 2129
PscI	ACATGT	2 cut(s)	736, 841
PsiI	TTATAA	2 cut(s)	434, 1224
PspFI	CCCAGC	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	334, 335, 1139
PspOMI	GGGCCC	1 cut(s)	333
PspPI	GGNCC	2 cut(s)	333, 334
PstNI	CAGNNNCTG	2 cut(s)	1355, 2127
PsuI	RGATCY	3 cut(s)	19, 1603, 1903
PvuII	CAGCTG	1 cut(s)	340
RruI	TCGCGA	1 cut(s)	53
RsaI	GTAC	3 cut(s)	911, 1799, 2096
RsaNI	GTAC	3 cut(s)	910, 1798, 2095
RseI	CAYNNNNRTG	2 cut(s)	1264, 1420
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	5 cut(s)	489, 549, 561, 675, 929
SatI	GCNGC	7 cut(s)	234, 302, 325, 369, 458, 700, 2110
Sau3AI	GATC	9 cut(s)	19, 43, 60, 128, 265, 351, 799, 1603, 1903
Sau96I	GGNCC	2 cut(s)	333, 334
ScaI	AGTACT	2 cut(s)	1799, 2096
SchI	GAGTC	7 cut(s)	101, 1075, 1355, 1637, 1799, 1937, 2129
SduI	GDGCHC	3 cut(s)	337, 537, 923
SfaNI	GCATC	3 cut(s)	565, 715, 764
SfoI	GGCGCC	1 cut(s)	1139
Sfr274I	CTCGAG	1 cut(s)	23
SfuI	TTCGAA	1 cut(s)	991
SlaI	CTCGAG	1 cut(s)	23
SmiMI	CAYNNNNRTG	2 cut(s)	1264, 1420
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	9 cut(s)	101, 246, 277, 551, 824, 879, 977, 1225, 1634
SseBI	AGGCCT	2 cut(s)	347, 1521
SspDI	GGCGCC	1 cut(s)	1137
SspI	AATATT	1 cut(s)	1291
SspMI	CTAG	3 cut(s)	566, 771, 1523
StuI	AGGCCT	2 cut(s)	347, 1521
StyI	CCWWGG	4 cut(s)	269, 914, 1040, 1370
TaaI	ACNGT	7 cut(s)	791, 808, 1031, 1388, 1395, 2099, 2123
TaiI	ACGT	2 cut(s)	960, 2001
TaqI	TCGA	7 cut(s)	24, 162, 288, 354, 991, 1690, 1990
TasI	AATT	9 cut(s)	101, 246, 277, 551, 824, 879, 977, 1225, 1634
TatI	WGTACW	2 cut(s)	1797, 2094
TauI	GCSGC	2 cut(s)	236, 304
TfiI	GAWTC	7 cut(s)	34, 70, 412, 584, 766, 1129, 1352
Tru1I	TTAA	5 cut(s)	489, 549, 561, 675, 929
Tru9I	TTAA	5 cut(s)	489, 549, 561, 675, 929
TscAI	CASTG	5 cut(s)	243, 334, 1016, 1148, 2128
TseFI	GTSAC	6 cut(s)	1640, 1769, 1940, 2069, 2099, 2123
TseI	GCWGC	5 cut(s)	324, 368, 457, 699, 2109
Tsp45I	GTSAC	6 cut(s)	1640, 1769, 1940, 2069, 2099, 2123
TspGWI	ACGGA	4 cut(s)	1415, 1473, 1548, 2088
TspRI	CASTG	5 cut(s)	243, 334, 1016, 1148, 2128
XapI	RAATTY	4 cut(s)	101, 551, 824, 1634
XceI	RCATGY	6 cut(s)	740, 845, 1062, 1263, 1367, 1419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XhoI	CTCGAG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	1397
XspI	CTAG	3 cut(s)	566, 771, 1523
ZrmI	AGTACT	2 cut(s)	1799, 2096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.