Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000420.1

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

210798 .. 212622

Gene Structure 1825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000420.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atgttcttaaattggaccactgctttgggtgttactctcaacttagctatgaacgatgcattgtcaaattcccaacaacttgaatctgtcacaggttacagacgaagtgattccggggaacagcaagattgcaacattagtcaatctgctcttttacagagaaaatttgaatcttgcagtccttctcttgtggcacctagtgaaattaagtttgtgtttaaatttgcaagagatgctatagtttctcagatcagttggtgtgtaaaaactcacaatggcaagagtttcaaggagacttgtgcgatttgttttgaagaaactgatgttgctcgcatgttttcaatcgatggttgtctgcacaggtattgcatttcttgtgtgaaaaaacatgtggaagtaaagttgcttagtgggatggtggcacagtgtccacatgaagcctgtaattctgaggtgaatattgatagctatgaacaattcttggcacctaatcttgttgcagttatgagccaacgaatcaaggaatcttctattcctgttacagagagagtctattgcccttaccccaagtgttctgccttaatgtccaaaatggaggtctttgaatataccaagacttcttacgttggtgctgaagaatctgcagccaggaaatgcatgaaatgtcattactatttttgttttgattgcatggttccttggcattacagaatgagctgcgaagagtacaaacaatcacatccatttcctcccaaagaagatcaactgctgaattcattggctacaacaaaacagtggcgcaactgtaagaagtgcaaccacatggttgaacttgcagaaggttgtaaccacatcacttgcaggtgtggatatgagttctgctacacttgtggagctgaatggaagaacaagaaaccaacatgttcctgcccactctgggatgagcactacataatacatgagcaggcgcatccagtgcagcccattatacatgagcagccacgtcaagtgcagcctattgtacgtgtgcgcccacgacaagttgcaccaggaaatgaacagccaaggcaggtacgaccacgacgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

362

Amino Acids

41.64

Weight (kDa)

8.2

Isoelectric Point (pI)

60.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	852
Acc36I	ACCTGC	2 cut(s)	852, 1060
AccB1I	GGYRCC	2 cut(s)	193, 484
AcsI	RAATTY	4 cut(s)	67, 164, 221, 772
AcuI	CTGAAG	1 cut(s)	654
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	3 cut(s)	728, 1023, 1074
AfiI	CCNNNNNNNGG	1 cut(s)	937
AflIII	ACRYGT	3 cut(s)	388, 920, 1024
AgsI	TTSAA	7 cut(s)	83, 170, 289, 314, 342, 605, 830
AjiI	CACGTC	1 cut(s)	1004
AjnI	CCWGG	2 cut(s)	647, 1048
AluBI	AGCT	4 cut(s)	47, 468, 717, 896
AluI	AGCT	4 cut(s)	47, 468, 717, 896
Alw21I	GWGCWC	1 cut(s)	948
Alw26I	GTCTC	1 cut(s)	287
ApeKI	GCWGC	5 cut(s)	644, 717, 979, 997, 1012
ApoI	RAATTY	4 cut(s)	67, 164, 221, 772
ArsI	GACNNNNNNTTYG	4 cut(s)	7, 39, 582, 614
Asp700I	GAANNNNTTC	1 cut(s)	109
AspLEI	GCGC	3 cut(s)	801, 970, 1032
AspS9I	GGNCC	1 cut(s)	15
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	15
BanI	GGYRCC	2 cut(s)	193, 484
Bbv12I	GWGCWC	1 cut(s)	948
BbvI	GCAGC	5 cut(s)	656, 704, 991, 1009, 1024
BccI	CCATC	2 cut(s)	341, 409
BciT130I	CCWGG	2 cut(s)	649, 1050
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	2 cut(s)	237, 642
BfuAI	ACCTGC	2 cut(s)	852, 1060
BisI	GCNGC	5 cut(s)	645, 718, 980, 998, 1013
BlsI	GCNGC	5 cut(s)	646, 719, 981, 999, 1014
Bme1390I	CCNGG	3 cut(s)	115, 649, 1050
Bme18I	GGWCC	1 cut(s)	15
BmgBI	CACGTC	1 cut(s)	1004
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	3 cut(s)	195, 486, 696
BmrFI	CCNGG	3 cut(s)	115, 649, 1050
BmsI	GCATC	3 cut(s)	46, 223, 979
BpuMI	CCSGG	1 cut(s)	115
Bsa29I	ATCGAT	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	1025
BsaJI	CCNNGG	3 cut(s)	114, 698, 1064
Bsc4I	CCNNNNNNNGG	1 cut(s)	937
Bse1I	ACTGG	1 cut(s)	974
BseBI	CCWGG	2 cut(s)	649, 1050
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	3 cut(s)	114, 698, 1064
BseGI	GGATG	4 cut(s)	420, 739, 946, 970
BseLI	CCNNNNNNNGG	1 cut(s)	937
BseMII	CTCAG	2 cut(s)	260, 441
BseNI	ACTGG	1 cut(s)	974
BseXI	GCAGC	5 cut(s)	656, 704, 991, 1009, 1024
BsgI	GTGCAG	3 cut(s)	341, 998, 1031
BshNI	GGYRCC	2 cut(s)	193, 484
BshVI	ATCGAT	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	948
BsiSI	CCGG	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	937
BsmAI	GTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	948
Bsp143I	GATC	2 cut(s)	249, 760
BspCNI	CTCAG	2 cut(s)	259, 442
BspDI	ATCGAT	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	195, 486, 696
BspMAI	CTGCAG	1 cut(s)	646
BspMI	ACCTGC	2 cut(s)	852, 1060
BspT107I	GGYRCC	2 cut(s)	193, 484
BsrI	ACTGG	1 cut(s)	974
BssECI	CCNNGG	3 cut(s)	114, 698, 1064
BssMI	GATC	2 cut(s)	249, 760
BssT1I	CCWWGG	2 cut(s)	698, 1064
Bst2UI	CCWGG	2 cut(s)	649, 1050
Bst4CI	ACNGT	3 cut(s)	426, 795, 806
Bst6I	CTCTTC	1 cut(s)	717
BstAPI	GCANNNNNTGC	2 cut(s)	233, 976
BstBAI	YACGTR	1 cut(s)	1025
BstC8I	GCNNGC	2 cut(s)	331, 966
BstDEI	CTNAG	4 cut(s)	43, 246, 407, 450
BstF5I	GGATG	4 cut(s)	420, 739, 946, 970
BstHHI	GCGC	3 cut(s)	801, 970, 1032
BstKTI	GATC	2 cut(s)	252, 763
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	2 cut(s)	249, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 976
BstNI	CCWGG	2 cut(s)	649, 1050
BstNSI	RCATGY	3 cut(s)	337, 392, 924
BstSCI	CCNGG	3 cut(s)	113, 647, 1048
BstSFI	CTRYAG	2 cut(s)	237, 642
BstV1I	GCAGC	5 cut(s)	656, 704, 991, 1009, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	345
BsuTUI	ATCGAT	1 cut(s)	345
BtrI	CACGTC	1 cut(s)	1004
BtsCI	GGATG	4 cut(s)	420, 739, 946, 970
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	4 cut(s)	18, 431, 800, 981
BveI	ACCTGC	2 cut(s)	852, 1060
Cac8I	GCNNGC	2 cut(s)	331, 966
CfoI	GCGC	3 cut(s)	801, 970, 1032
Cfr13I	GGNCC	1 cut(s)	15
ClaI	ATCGAT	1 cut(s)	345
Csp6I	GTAC	3 cut(s)	727, 1022, 1073
CspCI	CAANNNNNGTGG	2 cut(s)	839, 874
CviAII	CATG	9 cut(s)	334, 389, 434, 658, 691, 823, 921, 959, 992
CviQI	GTAC	3 cut(s)	727, 1022, 1073
DdeI	CTNAG	4 cut(s)	43, 246, 407, 450
DpnI	GATC	2 cut(s)	251, 762
DpnII	GATC	2 cut(s)	249, 760
DraI	TTTAAA	1 cut(s)	220
DraIII	CACNNNGTG	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco130I	CCWWGG	2 cut(s)	698, 1064
Eco47I	GGWCC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	772
EcoRII	CCWGG	2 cut(s)	647, 1048
EcoT14I	CCWWGG	2 cut(s)	698, 1064
EcoT22I	ATGCAT	2 cut(s)	61, 659
ErhI	CCWWGG	2 cut(s)	698, 1064
FaeI	CATG	9 cut(s)	337, 392, 437, 661, 694, 826, 924, 962, 995
FatI	CATG	9 cut(s)	333, 388, 433, 657, 690, 822, 920, 958, 991
Fnu4HI	GCNGC	5 cut(s)	645, 718, 980, 998, 1013
FokI	GGATG	4 cut(s)	427, 726, 953, 957
Fsp4HI	GCNGC	5 cut(s)	645, 718, 980, 998, 1013
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	3 cut(s)	800, 969, 1031
GluI	GCNGC	5 cut(s)	645, 718, 980, 998, 1013
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	3 cut(s)	801, 970, 1032
Hin1II	CATG	9 cut(s)	337, 392, 437, 661, 694, 826, 924, 962, 995
Hin6I	GCGC	3 cut(s)	799, 968, 1030
HinP1I	GCGC	3 cut(s)	799, 968, 1030
HinfI	GANTC	7 cut(s)	83, 110, 170, 516, 524, 549, 638
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	2 cut(s)	249, 451
Hpy8I	GTNNAC	1 cut(s)	431
Hpy99I	CGWCG	1 cut(s)	1086
HpyAV	CCTTC	2 cut(s)	192, 833
HpyCH4III	ACNGT	3 cut(s)	426, 795, 806
HpyCH4IV	ACGT	4 cut(s)	624, 1003, 1024, 1084
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 976
HpyF3I	CTNAG	4 cut(s)	43, 246, 407, 450
HpySE526I	ACGT	4 cut(s)	624, 1003, 1024, 1084
Hsp92II	CATG	9 cut(s)	337, 392, 437, 661, 694, 826, 924, 962, 995
HspAI	GCGC	3 cut(s)	799, 968, 1030
Kzo9I	GATC	2 cut(s)	249, 760
LmnI	GCTCC	1 cut(s)	893
Lsp1109I	GCAGC	5 cut(s)	656, 704, 991, 1009, 1024
LweI	GCATC	3 cut(s)	46, 223, 979
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	4 cut(s)	624, 1003, 1024, 1084
MaeIII	GTNAC	5 cut(s)	31, 88, 95, 538, 845
MalI	GATC	2 cut(s)	251, 762
MboI	GATC	2 cut(s)	249, 760
MboII	GAAGA	6 cut(s)	326, 519, 647, 734, 770, 916
MhlI	GDGCHC	1 cut(s)	948
MluCI	AATT	8 cut(s)	10, 67, 164, 204, 221, 445, 476, 772
MlyI	GAGTC	1 cut(s)	558
MnlI	CCTC	3 cut(s)	445, 589, 759
Mph1103I	ATGCAT	2 cut(s)	61, 659
MroXI	GAANNNNTTC	1 cut(s)	109
MseI	TTAA	4 cut(s)	8, 207, 219, 581
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	3 cut(s)	115, 649, 1050
MvaI	CCWGG	2 cut(s)	649, 1050
MwoI	GCNNNNNNNGC	2 cut(s)	233, 976
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	2 cut(s)	249, 760
NlaIII	CATG	9 cut(s)	337, 392, 437, 661, 694, 826, 924, 962, 995
NlaIV	GGNNCC	3 cut(s)	195, 486, 696
NmuCI	GTSAC	1 cut(s)	88
NsiI	ATGCAT	2 cut(s)	61, 659
NspI	RCATGY	3 cut(s)	337, 392, 924
PaqCI	CACCTGC	1 cut(s)	852
PciI	ACATGT	2 cut(s)	388, 920
PcsI	WCGNNNNNNNCGW	1 cut(s)	1081
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	6 cut(s)	83, 110, 170, 516, 524, 638
PkrI	GCNGC	5 cut(s)	646, 719, 981, 999, 1014
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
Ppu21I	YACGTR	1 cut(s)	1025
PscI	ACATGT	2 cut(s)	388, 920
Psp6I	CCWGG	2 cut(s)	647, 1048
PspGI	CCWGG	2 cut(s)	647, 1048
PspN4I	GGNNCC	3 cut(s)	195, 486, 696
PspPI	GGNCC	1 cut(s)	15
PstI	CTGCAG	1 cut(s)	646
RsaI	GTAC	3 cut(s)	728, 1023, 1074
RsaNI	GTAC	3 cut(s)	727, 1022, 1073
SaqAI	TTAA	4 cut(s)	8, 207, 219, 581
SatI	GCNGC	5 cut(s)	645, 718, 980, 998, 1013
Sau3AI	GATC	2 cut(s)	249, 760
Sau96I	GGNCC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	558
ScrFI	CCNGG	3 cut(s)	115, 649, 1050
SduI	GDGCHC	1 cut(s)	948
SfaNI	GCATC	3 cut(s)	46, 223, 979
SfcI	CTRYAG	2 cut(s)	237, 642
SinI	GGWCC	1 cut(s)	15
Sse9I	AATT	8 cut(s)	10, 67, 164, 204, 221, 445, 476, 772
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	3 cut(s)	113, 647, 1048
StyI	CCWWGG	2 cut(s)	698, 1064
TaaI	ACNGT	3 cut(s)	426, 795, 806
TaiI	ACGT	4 cut(s)	627, 1006, 1027, 1087
TaqI	TCGA	1 cut(s)	345
TasI	AATT	8 cut(s)	10, 67, 164, 204, 221, 445, 476, 772
TatI	WGTACW	1 cut(s)	726
TfiI	GAWTC	6 cut(s)	83, 110, 170, 516, 524, 638
Tru1I	TTAA	4 cut(s)	8, 207, 219, 581
Tru9I	TTAA	4 cut(s)	8, 207, 219, 581
TscAI	CASTG	4 cut(s)	25, 431, 800, 981
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	5 cut(s)	644, 717, 979, 997, 1012
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	6 cut(s)	65, 450, 486, 674, 765, 1071
TspRI	CASTG	4 cut(s)	25, 431, 800, 981
VpaK11BI	GGWCC	1 cut(s)	15
XapI	RAATTY	4 cut(s)	67, 164, 221, 772
XceI	RCATGY	3 cut(s)	337, 392, 924
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	1 cut(s)	198
Zsp2I	ATGCAT	2 cut(s)	61, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.