Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

68823457 .. 68826327

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG397200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGAAGACCGTACGGACGAAGACAACCTCCGCTCCATTCTCTCCGACCTGCTCAGGCACCTCAGGGTGGCCAAAACCCTCGAGTCCGACCACGACATGGCCTTCAATCTCCAACTGCAGGAAGCCATGGCCGACTCTCTCGCTCTCCAACCACCATCCACTTCTCAACTCAATCTCCACCCTCGGATTCACGACCACAATTTCGTAATCGACCTCACCGACTCGGCGGAGGCCTACTGCACGAACGACGCGTCGTCTTCGTCGAAGGCGGCGGAGGAGGAGGAGAGCGAGTGTTTTAGACTGTATTTCAAGGGGCTTGTAAGCGAGGAGAGGGTCAAGGACATGGATGTCATTGTGGCCGGGGTTGGGGTGGCCGTTTGTGACGCTAGAGATAATCTGATTTTGGAGGCCAAGAAGAATCTGGAGGCGTTTGGTGGTGGTGCGGTTCTGAGCAATGAGGCTGCTGAGCTTGAGGCTCTTATTGAAGGGCTCAGTACAGCTCTCACTCTGGACTTGAGAAATGTCACATTTTTCTGTGATAACAACAAGCTTTACCAATATGTCACATACACAGTGCGTCCTGAAAACTTCAAGATTGCGACATTAGTCACTCAAGTTGCTCTTCTACAAAGAAAATTTGAACATTGCACCCCTTCTCTTGTGGAACCTAGGGACATTAAGTTTGCAATTCAATTTGCAAGAGAGGCTATAGTTTCTCAGATCAACTGGTCAGCTAGCAATGGCAAGAGATTGGATGAGACTTGTGTAATTTGTTTTGAAGAAACAGATGTTGCTAGAATGTTTTCAATTGACGGCTGTCTGCACAGGTATTGCAATTCTTGTATGAAACAGCATGTTGAAGCAAAGTTGGTTAATGGGAGCGTGGTGCAGTGTCCTCATGAAGACTGTGAGTCTGAAGTGAGTATTGATAGCTGTGAAACATTCTTGGAGCCTAAACTTGTTCAAGTTATGCGCCAACGAATCAAGGAATCTTCTATTCCTGTTACGGAGAAGGTTTACTGTCCAAATCCCAAGTGTTCTGCATTAATGTCAAAAAAAGATGTCTTGGAATATACTAAGACTTATTATGGTTTTGCTGAACAATCTGGAGTCAGGAAATGCATGGAATGTCATTGCTGTTTTTGTATGAACTGCAAAGTTCCATTCGACAATCATACCTGCTATGACTACAAAAAATCAAATCCTTGTGCAGAAGAGCAATTGGTGAAGTCACTGGCTAAAATGAAACACTGGCGCCAGTGTGTGAACTGCAGCCATATGGTTGAACTTGCAGAAGATGTGGATATGAGTTTTGCTATACTTGTGGAGCTGAATGGAAGGACAAGACACCAACATGTTCCTGCCCAATCTGGGATGAGCGCAACATTATACGAGAATGATCAGGACTCAGGAGGATTACCATTACTGCTGTCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

479

Amino Acids

53.95

Weight (kDa)

5.09

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	120 - 236	3.5e-17	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
Acc36I	ACCTGC	2 cut(s)	57, 1187
AccB1I	GGYRCC	2 cut(s)	57, 1254
AccB7I	CCANNNNNTGG	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	33
AccII	CGCG	1 cut(s)	251
AciI	CCGC	5 cut(s)	31, 227, 269, 272, 443
AcoI	YGGCCR	4 cut(s)	69, 129, 357, 372
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	936
AcyI	GRCGYC	1 cut(s)	1255
AfaI	GTAC	2 cut(s)	13, 496
AfiI	CCNNNNNNNGG	5 cut(s)	67, 97, 118, 366, 1371
AflIII	ACRYGT	2 cut(s)	249, 1354
AhdI	GACNNNNNGTC	2 cut(s)	253, 910
AluBI	AGCT	6 cut(s)	469, 500, 550, 734, 933, 1330
AluI	AGCT	6 cut(s)	469, 500, 550, 734, 933, 1330
Alw26I	GTCTC	1 cut(s)	752
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	7 cut(s)	69, 99, 129, 231, 357, 372, 408
ApeKI	GCWGC	2 cut(s)	461, 1272
ApoI	RAATTY	1 cut(s)	635
ArsI	GACNNNNNNTTYG	6 cut(s)	185, 217, 236, 268, 665, 697
AseI	ATTAAT	1 cut(s)	1046
Asp700I	GAANNNNTTC	1 cut(s)	802
AspA2I	CCTAGG	1 cut(s)	668
AspLEI	GCGC	3 cut(s)	975, 1257, 1382
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	208, 1237
AsuNHI	GCTAGC	1 cut(s)	734
AvaI	CYCGRG	1 cut(s)	80
AvrII	CCTAGG	1 cut(s)	668
AxyI	CCTNAGG	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	71
BanI	GGYRCC	2 cut(s)	57, 1254
BanII	GRGCYC	1 cut(s)	492
BbsI	GAAGAC	4 cut(s)	12, 27, 249, 909
BbvI	GCAGC	2 cut(s)	448, 1284
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	2 cut(s)	359, 829
BclI	TGATCA	1 cut(s)	1399
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	4 cut(s)	387, 669, 735, 795
BfmI	CTRYAG	3 cut(s)	116, 708, 1270
BfoI	RGCGCY	1 cut(s)	1258
BfuAI	ACCTGC	2 cut(s)	57, 1187
BisI	GCNGC	3 cut(s)	270, 462, 1273
BlnI	CCTAGG	1 cut(s)	668
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	3 cut(s)	271, 463, 1274
Bme1390I	CCNGG	1 cut(s)	361
BmeRI	GACNNNNNGTC	2 cut(s)	253, 910
BmeT110I	CYCGRG	1 cut(s)	80
BmiI	GGNNCC	4 cut(s)	59, 666, 951, 1256
BmrFI	CCNGG	1 cut(s)	361
BmtI	GCTAGC	1 cut(s)	738
BoxI	GACNNNNGTC	2 cut(s)	605, 816
BpiI	GAAGAC	4 cut(s)	12, 27, 249, 909
BpmI	CTGGAG	2 cut(s)	443, 1128
Bpu10I	CCTNAGC	1 cut(s)	53
Bpu1102I	GCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	3 cut(s)	491, 535, 597
BpuMI	CCSGG	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	1255
BsaJI	CCNNGG	4 cut(s)	126, 182, 360, 668
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 47, 159, 189, 275, 305
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 97, 118, 366, 1371
Bse1I	ACTGG	4 cut(s)	731, 1239, 1256, 1258
Bse21I	CCTNAGG	1 cut(s)	62
Bse3DI	GCAATG	4 cut(s)	460, 643, 745, 1132
BseDI	CCNNGG	4 cut(s)	126, 182, 360, 668
BseGI	GGATG	4 cut(s)	155, 352, 760, 1380
BseLI	CCNNNNNNNGG	5 cut(s)	67, 97, 118, 366, 1371
BseMI	GCAATG	4 cut(s)	460, 643, 745, 1132
BseMII	CTCAG	7 cut(s)	67, 76, 440, 456, 505, 731, 1422
BseNI	ACTGG	4 cut(s)	731, 1239, 1256, 1258
BseRI	GAGGAG	4 cut(s)	290, 293, 296, 341
BseXI	GCAGC	2 cut(s)	448, 1284
BsgI	GTGCAG	4 cut(s)	223, 806, 908, 1230
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	7 cut(s)	71, 101, 131, 233, 359, 374, 410
BshNI	GGYRCC	2 cut(s)	57, 1254
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	360
BsiWI	CGTACG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	5 cut(s)	67, 97, 118, 366, 1371
BsmAI	GTCTC	1 cut(s)	752
BsmFI	GGGAC	1 cut(s)	686
BsnI	GGCC	7 cut(s)	71, 101, 131, 233, 359, 374, 410
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	720, 1399
Bsp1720I	GCTNAGC	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	5 cut(s)	31, 227, 269, 272, 443
BspANI	GGCC	7 cut(s)	71, 101, 131, 233, 359, 374, 410
BspCNI	CTCAG	7 cut(s)	66, 75, 441, 457, 504, 730, 1421
BspFNI	CGCG	1 cut(s)	251
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	4 cut(s)	59, 666, 951, 1256
BspMAI	CTGCAG	2 cut(s)	120, 1274
BspMI	ACCTGC	2 cut(s)	57, 1187
BspOI	GCTAGC	1 cut(s)	738
BspQI	GCTCTTC	2 cut(s)	627, 1209
BspT107I	GGYRCC	2 cut(s)	57, 1254
BsrBI	CCGCTC	1 cut(s)	33
BsrDI	GCAATG	4 cut(s)	460, 643, 745, 1132
BsrI	ACTGG	4 cut(s)	731, 1239, 1256, 1258
BssECI	CCNNGG	4 cut(s)	126, 182, 360, 668
BssMI	GATC	2 cut(s)	720, 1399
BssNI	GRCGYC	1 cut(s)	1255
BssT1I	CCWWGG	2 cut(s)	126, 668
Bst4CI	ACNGT	5 cut(s)	11, 303, 574, 908, 1022
Bst6I	CTCTTC	2 cut(s)	627, 1209
BstACI	GRCGYC	1 cut(s)	1255
BstC8I	GCNNGC	1 cut(s)	736
BstDEI	CTNAG	8 cut(s)	53, 62, 449, 465, 491, 717, 1077, 1408
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	4 cut(s)	155, 352, 760, 1380
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	1258
BstHHI	GCGC	3 cut(s)	975, 1257, 1382
BstKTI	GATC	2 cut(s)	723, 1402
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	2 cut(s)	720, 1399
BstMWI	GCNNNNNNNGC	1 cut(s)	704
BstNSI	RCATGY	2 cut(s)	857, 1358
BstPAI	GACNNNNGTC	2 cut(s)	605, 816
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	3 cut(s)	116, 708, 1270
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	448, 1284
BstV2I	GAAGAC	4 cut(s)	12, 27, 249, 909
Bsu36I	CCTNAGG	1 cut(s)	62
BsuRI	GGCC	7 cut(s)	71, 101, 131, 233, 359, 374, 410
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	4 cut(s)	155, 352, 760, 1380
BtsI	GCAGTG	1 cut(s)	896
BtsIMutI	CAGTG	5 cut(s)	579, 896, 1232, 1249, 1265
BveI	ACCTGC	2 cut(s)	57, 1187
Cac8I	GCNNGC	1 cut(s)	736
CciI	TCATGA	1 cut(s)	898
CfoI	GCGC	3 cut(s)	975, 1257, 1382
CseI	GACGC	4 cut(s)	240, 257, 392, 566
Csp6I	GTAC	2 cut(s)	12, 495
CviAII	CATG	7 cut(s)	97, 127, 343, 854, 899, 1123, 1355
CviQI	GTAC	2 cut(s)	12, 495
DdeI	CTNAG	8 cut(s)	53, 62, 449, 465, 491, 717, 1077, 1408
DinI	GGCGCC	1 cut(s)	1256
DpnI	GATC	2 cut(s)	722, 1401
DpnII	GATC	2 cut(s)	720, 1399
DrdI	GACNNNNNNGTC	1 cut(s)	347
DriI	GACNNNNNGTC	2 cut(s)	253, 910
DseDI	GACNNNNNNGTC	1 cut(s)	347
EaeI	YGGCCR	4 cut(s)	69, 129, 357, 372
Eam1104I	CTCTTC	2 cut(s)	627, 1209
Eam1105I	GACNNNNNGTC	2 cut(s)	253, 910
EarI	CTCTTC	2 cut(s)	627, 1209
EciI	GGCGGA	2 cut(s)	242, 287
Eco130I	CCWWGG	2 cut(s)	126, 668
Eco147I	AGGCCT	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	936
Eco81I	CCTNAGG	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	80
EcoT14I	CCWWGG	2 cut(s)	126, 668
EcoT22I	ATGCAT	1 cut(s)	1124
EcoT38I	GRGCYC	1 cut(s)	492
EgeI	GGCGCC	1 cut(s)	1256
EheI	GGCGCC	1 cut(s)	1256
ErhI	CCWWGG	2 cut(s)	126, 668
FaeI	CATG	7 cut(s)	100, 130, 346, 857, 902, 1126, 1358
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	7 cut(s)	96, 126, 342, 853, 898, 1122, 1354
FauNDI	CATATG	1 cut(s)	1278
FbaI	TGATCA	1 cut(s)	1399
Fnu4HI	GCNGC	3 cut(s)	270, 462, 1273
FokI	GGATG	4 cut(s)	142, 359, 767, 1387
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	3 cut(s)	270, 462, 1273
FspBI	CTAG	4 cut(s)	387, 669, 735, 795
GlaI	GCGC	3 cut(s)	974, 1256, 1381
GluI	GCNGC	3 cut(s)	270, 462, 1273
GsuI	CTGGAG	2 cut(s)	443, 1128
HaeII	RGCGCY	1 cut(s)	1258
HaeIII	GGCC	7 cut(s)	71, 101, 131, 233, 359, 374, 410
HapII	CCGG	1 cut(s)	360
HgaI	GACGC	4 cut(s)	240, 257, 392, 566
HhaI	GCGC	3 cut(s)	975, 1257, 1382
Hin1I	GRCGYC	1 cut(s)	1255
Hin1II	CATG	7 cut(s)	100, 130, 346, 857, 902, 1126, 1358
Hin6I	GCGC	3 cut(s)	973, 1255, 1380
HinP1I	GCGC	3 cut(s)	973, 1255, 1380
HindIII	AAGCTT	1 cut(s)	548
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	2 cut(s)	208, 1237
Hpy166II	GTNNAC	2 cut(s)	1018, 1267
Hpy188I	TCNGA	8 cut(s)	46, 88, 186, 399, 450, 720, 916, 1435
Hpy8I	GTNNAC	2 cut(s)	1018, 1267
Hpy99I	CGWCG	3 cut(s)	251, 256, 265
HpyAV	CCTTC	6 cut(s)	112, 259, 479, 663, 1006, 1332
HpyCH4III	ACNGT	5 cut(s)	11, 303, 574, 908, 1022
HpyF10VI	GCNNNNNNNGC	1 cut(s)	704
HpyF3I	CTNAG	8 cut(s)	53, 62, 449, 465, 491, 717, 1077, 1408
Hsp92I	GRCGYC	1 cut(s)	1255
Hsp92II	CATG	7 cut(s)	100, 130, 346, 857, 902, 1126, 1358
HspAI	GCGC	3 cut(s)	973, 1255, 1380
KasI	GGCGCC	1 cut(s)	1254
Ksp22I	TGATCA	1 cut(s)	1399
Kzo9I	GATC	2 cut(s)	720, 1399
LguI	GCTCTTC	2 cut(s)	627, 1209
LmnI	GCTCC	4 cut(s)	38, 879, 949, 1327
Lsp1109I	GCAGC	2 cut(s)	448, 1284
MaeI	CTAG	4 cut(s)	387, 669, 735, 795
MaeIII	GTNAC	6 cut(s)	380, 523, 562, 607, 1003, 1230
MalI	GATC	2 cut(s)	722, 1401
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	2 cut(s)	720, 1399
MfeI	CAATTG	2 cut(s)	807, 1220
MhlI	GDGCHC	1 cut(s)	492
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	8 cut(s)	199, 635, 687, 692, 768, 807, 835, 1220
MluI	ACGCGT	1 cut(s)	249
MluNI	TGGCCA	1 cut(s)	71
Mly113I	GGCGCC	1 cut(s)	1255
MlyI	GAGTC	6 cut(s)	92, 128, 215, 920, 1119, 1400
MmeI	TCCRAC	4 cut(s)	69, 111, 136, 172
Mox20I	TGGCCA	1 cut(s)	71
Mph1103I	ATGCAT	1 cut(s)	1124
MroXI	GAANNNNTTC	1 cut(s)	802
MscI	TGGCCA	1 cut(s)	71
MseI	TTAA	3 cut(s)	678, 873, 1046
MslI	CAYNNNNRTG	1 cut(s)	1353
Msp20I	TGGCCA	1 cut(s)	71
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	361
MunI	CAATTG	2 cut(s)	807, 1220
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	704
NarI	GGCGCC	1 cut(s)	1255
NciI	CCSGG	1 cut(s)	361
NcoI	CCATGG	1 cut(s)	126
NdeI	CATATG	1 cut(s)	1278
NdeII	GATC	2 cut(s)	720, 1399
NheI	GCTAGC	1 cut(s)	734
NlaIII	CATG	7 cut(s)	100, 130, 346, 857, 902, 1126, 1358
NlaIV	GGNNCC	4 cut(s)	59, 666, 951, 1256
NmeAIII	GCCGAG	1 cut(s)	203
NmuCI	GTSAC	5 cut(s)	380, 523, 562, 607, 1230
NsiI	ATGCAT	1 cut(s)	1124
NspI	RCATGY	2 cut(s)	857, 1358
PaeR7I	CTCGAG	1 cut(s)	80
PagI	TCATGA	1 cut(s)	898
PceI	AGGCCT	1 cut(s)	233
PciI	ACATGT	1 cut(s)	1354
PciSI	GCTCTTC	2 cut(s)	627, 1209
PcsI	WCGNNNNNNNCGW	3 cut(s)	216, 248, 260
PdmI	GAANNNNTTC	1 cut(s)	802
PfeI	GAWTC	4 cut(s)	187, 418, 981, 989
Pfl23II	CGTACG	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	97
PkrI	GCNGC	3 cut(s)	271, 463, 1274
PleI	GAGTC	6 cut(s)	91, 128, 215, 919, 1118, 1400
PluTI	GGCGCC	1 cut(s)	1258
PpsI	GAGTC	6 cut(s)	91, 128, 215, 919, 1118, 1400
PscI	ACATGT	1 cut(s)	1354
PshAI	GACNNNNGTC	2 cut(s)	605, 816
PshBI	ATTAAT	1 cut(s)	1046
PspLI	CGTACG	1 cut(s)	11
PspN4I	GGNNCC	4 cut(s)	59, 666, 951, 1256
PspXI	VCTCGAGB	1 cut(s)	80
PstI	CTGCAG	2 cut(s)	120, 1274
RsaI	GTAC	2 cut(s)	13, 496
RsaNI	GTAC	2 cut(s)	12, 495
RseI	CAYNNNNRTG	1 cut(s)	1353
SapI	GCTCTTC	2 cut(s)	627, 1209
SaqAI	TTAA	3 cut(s)	678, 873, 1046
SatI	GCNGC	3 cut(s)	270, 462, 1273
Sau3AI	GATC	2 cut(s)	720, 1399
SchI	GAGTC	6 cut(s)	92, 128, 215, 920, 1119, 1400
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	492
SfcI	CTRYAG	3 cut(s)	116, 708, 1270
SfoI	GGCGCC	1 cut(s)	1256
Sfr274I	CTCGAG	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	1353
SmlI	CTYRAG	4 cut(s)	80, 470, 514, 612
SmoI	CTYRAG	4 cut(s)	80, 470, 514, 612
Sse9I	AATT	8 cut(s)	199, 635, 687, 692, 768, 807, 835, 1220
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	5 cut(s)	31, 227, 269, 272, 443
SspDI	GGCGCC	1 cut(s)	1254
SspMI	CTAG	4 cut(s)	387, 669, 735, 795
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	2 cut(s)	126, 668
TaaI	ACNGT	5 cut(s)	11, 303, 574, 908, 1022
TaqI	TCGA	4 cut(s)	81, 210, 263, 1167
TasI	AATT	8 cut(s)	199, 635, 687, 692, 768, 807, 835, 1220
TatI	WGTACW	1 cut(s)	494
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	4 cut(s)	187, 418, 981, 989
Tru1I	TTAA	3 cut(s)	678, 873, 1046
Tru9I	TTAA	3 cut(s)	678, 873, 1046
TscAI	CASTG	5 cut(s)	579, 896, 1239, 1256, 1265
TseFI	GTSAC	5 cut(s)	380, 523, 562, 607, 1230
TseI	GCWGC	2 cut(s)	461, 1272
Tsp45I	GTSAC	5 cut(s)	380, 523, 562, 607, 1230
TspDTI	ATGAA	4 cut(s)	860, 915, 1163, 1259
TspGWI	ACGGA	2 cut(s)	29, 1022
TspRI	CASTG	5 cut(s)	579, 896, 1239, 1256, 1265
Van91I	CCANNNNNTGG	1 cut(s)	97
VspI	ATTAAT	1 cut(s)	1046
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	2 cut(s)	857, 1358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XhoI	CTCGAG	1 cut(s)	80
XmaJI	CCTAGG	1 cut(s)	668
XmnI	GAANNNNTTC	1 cut(s)	802
XspI	CTAG	4 cut(s)	387, 669, 735, 795
Zsp2I	ATGCAT	1 cut(s)	1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.