Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

68866768 .. 68873981

Gene Structure 7214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG397700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGGCCAGTACCAGCAGAGTCCCCCGCTCCGATCACCGCCGCGACGACGACGACGACGACTTCATGGACATCGATACGCTCGACTACGACGCCGAAATCGCCTTCAACCTCCAACTCCAAGAAGCCCTAACCGCCTCCCTCGCCCCTCAACCACCCTCCTCCGCCGCCCGAAACGACGCCGCGTCGGTACTCGTCCGACTGGAGCAGGCTCTGAAAGACAGCGTGCAGAGCGAGATCGAACTGCGGCGGGCGAGGGACGATCTCGCGCGTGTGATTCACGACGCCAAGGTTGCGAGGGAGATCGCGGACATTCCCGACGACGAGTGGGAAAAGTCCGGCGGCGACTTCGCCAAGCCCTTCGACGGAGGTTCGTCGGCGGCGGCGGCGGCGAGTGCGGAGAGCGAGGGCGAGTTCAGGCTCTATTTCAAGGGTTTGGTGAGCGAGGAACAGGTTGGGGATCGGAAATTGGTGCTGGCCGGGATCGGAGTAGCGATATGCGACCCCAGGGATAATCTGGTGTTCGAGGTTAGGAAACCGCTGATTGGGAATGGGCTTAGTAGAAATTCGGCCCAATTGAAGGCCTTGATCGAAGGGCTCACTGCTGCTCTGTCTTTGGGGCTGAAGCGAATCACCTTCTTCTGCGATAACTATCCAATCTTTCAGTTTGTTAATGGGAAATGGCCAGCAAAGCAGCGCAAGGTTGTAAATCTTGTTAATCAGGTTAAGAGCCTTCGAAACAAGTTTACGCAGTGCAATTCCAGGCTTGTGCCTCGGTTGGAAATTAAGTTTGCATTTAAACTTGCAAGAGATGCCATAGAGTCTCAGTCTCTGTCTCAGATGAAGCCTGCAGAATCTACCAGTCACAAGAATGTGAAAGAGACTTGCGTGATTTGTATGGAAGATAGTGATGTTAGTCAGATGTTTTCAGTTGATGCCTGCCTACATCGATATTGCTATTCTTGTATGAAACAGCATGTGGAGGTGAAGTTGCTTCATGGGATCCTTCCTAAATGCCCTCATGAAGACTGTAAGTCTGACCTTAGTGTCGACAGTTGTGCGAAATTCTTGACACCTAAACATGTTGACACTATGCGTCAACGTATAAAGGAAGCTTCAATTCCTGCAACTGAGAGAGTTTATTGCCCATATCCAAGGTGCTCTCTCTTAATGTCAAAAAGCGAGGTTTTACAACATGCTAAGAAAACCTTGATGGGGGCTGTGGAACAATCAGGGCTTAGGAGATGCATGAAATGTCACTACCTTTTTTGCATCAATTGTAAAGTCCCTTGGCACAGAAACATCACATGCGCTGACTACAAAAAGTCGAATCCTAATCCTCCAGAAGAGGACACAAAGCTAAAGTTCCTTGCCTCTAGTAAGCTTTGGCGCCAATGTGTGAAGTGCAGCCATATGATTGAACTTCTTGAAGGTTGCTACCACATGACTTGCAGGTGTAATTATGAGTTCTGCTATAATTGTGGAGCTGAGTGGAAAGACAAGAAGCCAACATGTACATGCCCGCTGTGGATTGAGGATAATATTTTGCATGAGGATGATGATTTTGATGGAGAGTCGGATTCTGAATCTGAAGTTGAATTTGTAAGTGAGCATGATGGTTGCCATTATTGTGGAGCTGAGTGGAAAGACAGAAAGGCAACATGTTCATGCCCACTATCAGATGAGGATAGCAGTTCGGATGGCCAAGTTGATAAATATTTTGAGGAGGAAGAAGATGATGAAGCTGAGGACTACAATGATGATGAATATCAAAGTGAAGATGAGGAGGAAAAAGAAGTTGGAGGTCATAAGTATGAAAACGATAGTGAAGATGAATATGAAAGTGAAAGCGGTATAAGTGAGGAAGAGGTTCAGGAGAGACAGGTTCAAGAGCAGTTTTTGGGGAAAGATATCGAGAATCATATCTTGTCTGATGAAGATGAATATTATGGGGTGGAGGAATATCAAAGTGAAGATGAGGAGGAAAAAGAAGTTGGAGGTCATAAGTATGAAAACGATAGTGAAGATGAATATGAAAGTGAAAGCGGTGTTAGTGAGGAAGAGGTTCAGGAGAGACAGGTTCAAGAGCAGTTTTTGGGGAAAGATATCGAGAATCAGATTTTGTCTGATGAAGGTGAATATTATGGGGTGGAGGAAGAAGATGACAACAACAGCGAGGACTTCAATAATAGTGAGTGTCAAAGTGAGGATGAGGAGGAAAATGAAGTTGGGGGTGATGAATATGAAAACGAAGGCATTGTAGTTGAGGATGAGGTGCAGGAGGGACAGATTCAAGAGGAGGTTTTGGACATGGATATGGGGGATCATATCTCGTCCTATGACGATGATATATATTTTGATGTAGAGTATGAGGAAGATGAAGAGGAGAACTATTGTGACTTCGATTGTTGTGACTCTGACTCGGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

809

Amino Acids

92.39

Weight (kDa)

4.35

Isoelectric Point (pI)

61.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	158 - 271	3.8e-26	Reverse transcriptase-like
IBR	PF01485	375 - 436	1.6e-10	IBR domain, a half RING-finger domain
IBR	PF01485	454 - 504	2.6e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	464 - 500	4e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1440
AasI	GACNNNNNNGTC	1 cut(s)	1043
Acc36I	ACCTGC	1 cut(s)	1440
AccB1I	GGYRCC	1 cut(s)	1386
AccBSI	CCGCTC	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	1047
AccII	CGCG	5 cut(s)	42, 182, 266, 268, 305
AclWI	GGATC	5 cut(s)	465, 488, 994, 1007, 2328
AcoI	YGGCCR	4 cut(s)	3, 474, 680, 1699
AcsI	RAATTY	3 cut(s)	562, 1061, 1595
AcuI	CTGAAG	2 cut(s)	641, 1608
AcyI	GRCGYC	4 cut(s)	90, 177, 282, 1387
AfaI	GTAC	3 cut(s)	10, 189, 1513
AfiI	CCNNNNNNNGG	4 cut(s)	362, 542, 577, 1212
AflIII	ACRYGT	3 cut(s)	1078, 1508, 1658
AhdI	GACNNNNNGTC	2 cut(s)	181, 1030
AjnI	CCWGG	2 cut(s)	503, 758
AjuI	GAANNNNNNNTTGG	6 cut(s)	1779, 1811, 1974, 2006, 2208, 2240
AluBI	AGCT	6 cut(s)	1112, 1357, 1381, 1484, 1634, 1742
AluI	AGCT	6 cut(s)	1112, 1357, 1381, 1484, 1634, 1742
Alw21I	GWGCWC	1 cut(s)	1160
Alw26I	GTCTC	6 cut(s)	825, 831, 837, 872, 1870, 2065
AlwI	GGATC	5 cut(s)	465, 488, 994, 1007, 2328
AlwNI	CAGNNNCTG	2 cut(s)	211, 829
AoxI	GGCC	6 cut(s)	3, 474, 567, 579, 680, 1699
ApeKI	GCWGC	3 cut(s)	602, 691, 1404
ApoI	RAATTY	3 cut(s)	562, 1061, 1595
Asp700I	GAANNNNTTC	2 cut(s)	1866, 2061
AspLEI	GCGC	4 cut(s)	268, 696, 1310, 1389
AspS9I	GGNCC	1 cut(s)	568
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	6 cut(s)	26, 448, 622, 994, 2144, 2243
AsuII	TTCGAA	1 cut(s)	733
BalI	TGGCCA	3 cut(s)	5, 682, 1701
BamHI	GGATCC	1 cut(s)	999
BanI	GGYRCC	1 cut(s)	1386
BanII	GRGCYC	1 cut(s)	597
BbsI	GAAGAC	1 cut(s)	1029
Bbv12I	GWGCWC	1 cut(s)	1160
BbvCI	CCTCAGC	1 cut(s)	1743
BbvI	GCAGC	3 cut(s)	589, 703, 1416
BccI	CCATC	4 cut(s)	1204, 1559, 1607, 1691
BcgI	CGANNNNNNTGC	2 cut(s)	1037, 1071
BciT130I	CCWGG	2 cut(s)	505, 760
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	6 cut(s)	825, 831, 837, 872, 1870, 2065
BfaI	CTAG	1 cut(s)	1374
BfmI	CTRYAG	1 cut(s)	846
BfoI	RGCGCY	1 cut(s)	1390
BfuAI	ACCTGC	1 cut(s)	1440
Bme1390I	CCNGG	3 cut(s)	478, 505, 760
BmeRI	GACNNNNNGTC	2 cut(s)	181, 1030
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	2 cut(s)	1001, 1388
BmrFI	CCNGG	3 cut(s)	478, 505, 760
BmsI	GCATC	4 cut(s)	799, 922, 1232, 1278
BpiI	GAAGAC	1 cut(s)	1029
BpmI	CTGGAG	2 cut(s)	221, 1323
Bpu10I	CCTNAGC	2 cut(s)	1235, 1743
Bpu14I	TTCGAA	1 cut(s)	733
BpuMI	CCSGG	1 cut(s)	478
Bsa29I	ATCGAT	2 cut(s)	72, 946
BsaBI	GATNNNNATC	2 cut(s)	648, 1764
BsaHI	GRCGYC	4 cut(s)	90, 177, 282, 1387
BsaJI	CCNNGG	6 cut(s)	285, 503, 504, 770, 1151, 1286
BsaXI	ACNNNNNCTCC	2 cut(s)	971, 1001
Bsc4I	CCNNNNNNNGG	4 cut(s)	362, 542, 577, 1212
Bse1I	ACTGG	3 cut(s)	6, 204, 858
Bse8I	GATNNNNATC	2 cut(s)	648, 1764
BseBI	CCWGG	2 cut(s)	505, 760
BseCI	ATCGAT	2 cut(s)	72, 946
BseDI	CCNNGG	6 cut(s)	285, 503, 504, 770, 1151, 1286
BseGI	GGATG	4 cut(s)	1558, 1702, 2212, 2272
BseJI	GATNNNNATC	2 cut(s)	648, 1764
BseLI	CCNNNNNNNGG	4 cut(s)	362, 542, 577, 1212
BseMII	CTCAG	6 cut(s)	836, 848, 1119, 1476, 1626, 1734
BseNI	ACTGG	3 cut(s)	6, 204, 858
BseRI	GAGGAG	7 cut(s)	148, 1736, 1796, 1991, 2225, 2309, 2396
BseXI	GCAGC	3 cut(s)	589, 703, 1416
BsgI	GTGCAG	3 cut(s)	245, 1423, 2294
Bsh1236I	CGCG	5 cut(s)	42, 182, 266, 268, 305
BshFI	GGCC	6 cut(s)	5, 476, 569, 581, 682, 1701
BshNI	GGYRCC	1 cut(s)	1386
BshVI	ATCGAT	2 cut(s)	72, 946
BsiHKAI	GWGCWC	1 cut(s)	1160
BsiSI	CCGG	2 cut(s)	336, 477
BslFI	GGGAC	4 cut(s)	5, 269, 1268, 2295
BslI	CCNNNNNNNGG	4 cut(s)	362, 542, 577, 1212
BsmAI	GTCTC	6 cut(s)	825, 831, 837, 872, 1870, 2065
BsmFI	GGGAC	4 cut(s)	5, 269, 1268, 2295
BsnI	GGCC	6 cut(s)	5, 476, 569, 581, 682, 1701
Bsp119I	TTCGAA	1 cut(s)	733
Bsp1286I	GDGCHC	2 cut(s)	597, 1160
Bsp1407I	TGTACA	1 cut(s)	1511
Bsp143I	GATC	9 cut(s)	31, 234, 259, 300, 457, 480, 585, 999, 2320
BspANI	GGCC	6 cut(s)	5, 476, 569, 581, 682, 1701
BspCNI	CTCAG	6 cut(s)	835, 847, 1120, 1477, 1627, 1735
BspDI	ATCGAT	2 cut(s)	72, 946
BspFNI	CGCG	5 cut(s)	42, 182, 266, 268, 305
BspHI	TCATGA	1 cut(s)	1018
BspLI	GGNNCC	2 cut(s)	1001, 1388
BspMAI	CTGCAG	1 cut(s)	850
BspMI	ACCTGC	1 cut(s)	1440
BspPI	GGATC	5 cut(s)	465, 488, 994, 1007, 2328
BspT104I	TTCGAA	1 cut(s)	733
BspT107I	GGYRCC	1 cut(s)	1386
BsrBI	CCGCTC	1 cut(s)	27
BsrGI	TGTACA	1 cut(s)	1511
BsrI	ACTGG	3 cut(s)	6, 204, 858
BssECI	CCNNGG	6 cut(s)	285, 503, 504, 770, 1151, 1286
BssMI	GATC	9 cut(s)	31, 234, 259, 300, 457, 480, 585, 999, 2320
BssNI	GRCGYC	4 cut(s)	90, 177, 282, 1387
BssT1I	CCWWGG	3 cut(s)	285, 1151, 1286
Bst2UI	CCWGG	2 cut(s)	505, 760
Bst4CI	ACNGT	2 cut(s)	1028, 1052
Bst6I	CTCTTC	4 cut(s)	1338, 1857, 2052, 2373
BstACI	GRCGYC	4 cut(s)	90, 177, 282, 1387
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstAUI	TGTACA	1 cut(s)	1511
BstBI	TTCGAA	1 cut(s)	733
BstC8I	GCNNGC	8 cut(s)	207, 224, 249, 474, 684, 846, 937, 1520
BstF5I	GGATG	4 cut(s)	1558, 1702, 2212, 2272
BstFNI	CGCG	5 cut(s)	42, 182, 266, 268, 305
BstH2I	RGCGCY	1 cut(s)	1390
BstHHI	GCGC	4 cut(s)	268, 696, 1310, 1389
BstKTI	GATC	9 cut(s)	34, 237, 262, 303, 460, 483, 588, 1002, 2323
BstMAI	GTCTC	6 cut(s)	825, 831, 837, 872, 1870, 2065
BstMBI	GATC	9 cut(s)	31, 234, 259, 300, 457, 480, 585, 999, 2320
BstNI	CCWGG	2 cut(s)	505, 760
BstNSI	RCATGY	7 cut(s)	977, 1082, 1196, 1308, 1512, 1518, 1662
BstSCI	CCNGG	3 cut(s)	476, 503, 758
BstSFI	CTRYAG	1 cut(s)	846
BstUI	CGCG	5 cut(s)	42, 182, 266, 268, 305
BstV1I	GCAGC	3 cut(s)	589, 703, 1416
BstV2I	GAAGAC	1 cut(s)	1029
BstX2I	RGATCY	1 cut(s)	999
BstXI	CCANNNNNNTGG	1 cut(s)	1628
BstYI	RGATCY	1 cut(s)	999
Bsu15I	ATCGAT	2 cut(s)	72, 946
BsuRI	GGCC	6 cut(s)	5, 476, 569, 581, 682, 1701
BsuTUI	ATCGAT	2 cut(s)	72, 946
BtsCI	GGATG	4 cut(s)	1558, 1702, 2212, 2272
BtsI	GCAGTG	2 cut(s)	597, 755
BtsIMutI	CAGTG	2 cut(s)	597, 755
BveI	ACCTGC	1 cut(s)	1440
Cac8I	GCNNGC	8 cut(s)	207, 224, 249, 474, 684, 846, 937, 1520
CaiI	CAGNNNCTG	2 cut(s)	211, 829
CciI	TCATGA	1 cut(s)	1018
CfoI	GCGC	4 cut(s)	268, 696, 1310, 1389
Cfr13I	GGNCC	1 cut(s)	568
ClaI	ATCGAT	2 cut(s)	72, 946
CseI	GACGC	5 cut(s)	98, 171, 185, 290, 1082
Csp6I	GTAC	3 cut(s)	9, 188, 1512
CspCI	CAANNNNNGTGG	2 cut(s)	1427, 1462
CviQI	GTAC	3 cut(s)	9, 188, 1512
DinI	GGCGCC	1 cut(s)	1388
DpnI	GATC	9 cut(s)	33, 236, 261, 302, 459, 482, 587, 1001, 2322
DpnII	GATC	9 cut(s)	31, 234, 259, 300, 457, 480, 585, 999, 2320
DraI	TTTAAA	1 cut(s)	796
DrdI	GACNNNNNNGTC	1 cut(s)	1043
DriI	GACNNNNNGTC	2 cut(s)	181, 1030
DseDI	GACNNNNNNGTC	1 cut(s)	1043
EaeI	YGGCCR	4 cut(s)	3, 474, 680, 1699
Eam1104I	CTCTTC	4 cut(s)	1338, 1857, 2052, 2373
Eam1105I	GACNNNNNGTC	2 cut(s)	181, 1030
EarI	CTCTTC	4 cut(s)	1338, 1857, 2052, 2373
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	3 cut(s)	285, 1151, 1286
Eco147I	AGGCCT	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	597
Eco32I	GATATC	2 cut(s)	1909, 2104
Eco57I	CTGAAG	2 cut(s)	641, 1608
EcoRII	CCWGG	2 cut(s)	503, 758
EcoRV	GATATC	2 cut(s)	1909, 2104
EcoT14I	CCWWGG	3 cut(s)	285, 1151, 1286
EcoT22I	ATGCAT	1 cut(s)	1247
EcoT38I	GRGCYC	1 cut(s)	597
EgeI	GGCGCC	1 cut(s)	1388
EheI	GGCGCC	1 cut(s)	1388
ErhI	CCWWGG	3 cut(s)	285, 1151, 1286
FalI	AAGNNNNNCTT	2 cut(s)	1190, 1222
FaqI	GGGAC	4 cut(s)	5, 269, 1268, 2295
FauI	CCCGC	3 cut(s)	32, 240, 1527
FauNDI	CATATG	1 cut(s)	1410
FblI	GTMKAC	1 cut(s)	1047
FokI	GGATG	4 cut(s)	1565, 1709, 2219, 2279
FriOI	GRGCYC	1 cut(s)	597
FspBI	CTAG	1 cut(s)	1374
GlaI	GCGC	4 cut(s)	267, 695, 1309, 1388
GsuI	CTGGAG	2 cut(s)	221, 1323
HaeII	RGCGCY	1 cut(s)	1390
HaeIII	GGCC	6 cut(s)	5, 476, 569, 581, 682, 1701
HapII	CCGG	2 cut(s)	336, 477
HgaI	GACGC	5 cut(s)	98, 171, 185, 290, 1082
HhaI	GCGC	4 cut(s)	268, 696, 1310, 1389
Hin1I	GRCGYC	4 cut(s)	90, 177, 282, 1387
Hin6I	GCGC	4 cut(s)	266, 694, 1308, 1387
HinP1I	GCGC	4 cut(s)	266, 694, 1308, 1387
HincII	GTYRAC	3 cut(s)	1048, 1084, 1097
HindII	GTYRAC	3 cut(s)	1048, 1084, 1097
HindIII	AAGCTT	2 cut(s)	1110, 1379
HpaII	CCGG	2 cut(s)	336, 477
HphI	GGTGA	6 cut(s)	26, 448, 622, 994, 2144, 2243
Hpy166II	GTNNAC	4 cut(s)	744, 1048, 1084, 1097
Hpy8I	GTNNAC	4 cut(s)	744, 1048, 1084, 1097
HpyCH4III	ACNGT	2 cut(s)	1028, 1052
HpyCH4IV	ACGT	1 cut(s)	1099
HpySE526I	ACGT	1 cut(s)	1099
Hsp92I	GRCGYC	4 cut(s)	90, 177, 282, 1387
HspAI	GCGC	4 cut(s)	266, 694, 1308, 1387
KasI	GGCGCC	1 cut(s)	1386
Kzo9I	GATC	9 cut(s)	31, 234, 259, 300, 457, 480, 585, 999, 2320
LmnI	GCTCC	4 cut(s)	32, 202, 1481, 1631
Lsp1109I	GCAGC	3 cut(s)	589, 703, 1416
LweI	GCATC	4 cut(s)	799, 922, 1232, 1278
MaeI	CTAG	1 cut(s)	1374
MaeII	ACGT	1 cut(s)	1099
MaeIII	GTNAC	4 cut(s)	860, 1253, 2393, 2408
MalI	GATC	9 cut(s)	33, 236, 261, 302, 459, 482, 587, 1001, 2322
MbiI	CCGCTC	1 cut(s)	27
MboI	GATC	9 cut(s)	31, 234, 259, 300, 457, 480, 585, 999, 2320
MfeI	CAATTG	2 cut(s)	572, 1273
MflI	RGATCY	1 cut(s)	999
MhlI	GDGCHC	2 cut(s)	597, 1160
MlsI	TGGCCA	3 cut(s)	5, 682, 1701
MluNI	TGGCCA	3 cut(s)	5, 682, 1701
Mly113I	GGCGCC	1 cut(s)	1387
MlyI	GAGTC	5 cut(s)	27, 827, 1580, 2405, 2411
MmeI	TCCRAC	6 cut(s)	136, 220, 756, 1554, 1777, 1972
Mox20I	TGGCCA	3 cut(s)	5, 682, 1701
Mph1103I	ATGCAT	1 cut(s)	1247
MroXI	GAANNNNTTC	2 cut(s)	1866, 2061
MscI	TGGCCA	3 cut(s)	5, 682, 1701
MseI	TTAA	6 cut(s)	669, 714, 723, 783, 795, 1166
MslI	CAYNNNNRTG	8 cut(s)	867, 1513, 1551, 1626, 1663, 1809, 2004, 2312
Msp20I	TGGCCA	3 cut(s)	5, 682, 1701
MspA1I	CMGCKG	2 cut(s)	538, 1522
MspI	CCGG	2 cut(s)	336, 477
MspR9I	CCNGG	3 cut(s)	478, 505, 760
MunI	CAATTG	2 cut(s)	572, 1273
MvaI	CCWGG	2 cut(s)	505, 760
MvnI	CGCG	5 cut(s)	42, 182, 266, 268, 305
NarI	GGCGCC	1 cut(s)	1387
NciI	CCSGG	1 cut(s)	478
NdeI	CATATG	1 cut(s)	1410
NdeII	GATC	9 cut(s)	31, 234, 259, 300, 457, 480, 585, 999, 2320
NlaIV	GGNNCC	2 cut(s)	1001, 1388
NmuCI	GTSAC	4 cut(s)	860, 1253, 2393, 2408
NsiI	ATGCAT	1 cut(s)	1247
NspI	RCATGY	7 cut(s)	977, 1082, 1196, 1308, 1512, 1518, 1662
NspV	TTCGAA	1 cut(s)	733
PagI	TCATGA	1 cut(s)	1018
PaqCI	CACCTGC	1 cut(s)	1440
PasI	CCCWGGG	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	581
PciI	ACATGT	3 cut(s)	1078, 1508, 1658
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 54, 78
PdmI	GAANNNNTTC	2 cut(s)	1866, 2061
PfeI	GAWTC	9 cut(s)	274, 627, 851, 1327, 1577, 1583, 1915, 2110, 2287
PleI	GAGTC	5 cut(s)	26, 826, 1579, 2405, 2411
PluTI	GGCGCC	1 cut(s)	1390
PpsI	GAGTC	5 cut(s)	26, 826, 1579, 2405, 2411
PscI	ACATGT	3 cut(s)	1078, 1508, 1658
Psp6I	CCWGG	2 cut(s)	503, 758
PspGI	CCWGG	2 cut(s)	503, 758
PspN4I	GGNNCC	2 cut(s)	1001, 1388
PspPI	GGNCC	1 cut(s)	568
PstI	CTGCAG	1 cut(s)	850
PstNI	CAGNNNCTG	2 cut(s)	211, 829
PsuI	RGATCY	1 cut(s)	999
RsaI	GTAC	3 cut(s)	10, 189, 1513
RsaNI	GTAC	3 cut(s)	9, 188, 1512
RseI	CAYNNNNRTG	8 cut(s)	867, 1513, 1551, 1626, 1663, 1809, 2004, 2312
SalI	GTCGAC	1 cut(s)	1046
SaqAI	TTAA	6 cut(s)	669, 714, 723, 783, 795, 1166
Sau3AI	GATC	9 cut(s)	31, 234, 259, 300, 457, 480, 585, 999, 2320
Sau96I	GGNCC	1 cut(s)	568
SchI	GAGTC	5 cut(s)	27, 827, 1580, 2405, 2411
ScrFI	CCNGG	3 cut(s)	478, 505, 760
SduI	GDGCHC	2 cut(s)	597, 1160
SfaNI	GCATC	4 cut(s)	799, 922, 1232, 1278
SfcI	CTRYAG	1 cut(s)	846
SfoI	GGCGCC	1 cut(s)	1388
SfuI	TTCGAA	1 cut(s)	733
SmiMI	CAYNNNNRTG	8 cut(s)	867, 1513, 1551, 1626, 1663, 1809, 2004, 2312
SseBI	AGGCCT	1 cut(s)	581
SspDI	GGCGCC	1 cut(s)	1386
SspI	AATATT	4 cut(s)	1540, 1715, 1943, 2138
SspMI	CTAG	1 cut(s)	1374
StuI	AGGCCT	1 cut(s)	581
StyD4I	CCNGG	3 cut(s)	476, 503, 758
StyI	CCWWGG	3 cut(s)	285, 1151, 1286
TaaI	ACNGT	2 cut(s)	1028, 1052
TaiI	ACGT	1 cut(s)	1102
TatI	WGTACW	1 cut(s)	1511
TauI	GCSGC	9 cut(s)	42, 167, 182, 247, 342, 380, 383, 386, 389
TfiI	GAWTC	9 cut(s)	274, 627, 851, 1327, 1577, 1583, 1915, 2110, 2287
Tru1I	TTAA	6 cut(s)	669, 714, 723, 783, 795, 1166
Tru9I	TTAA	6 cut(s)	669, 714, 723, 783, 795, 1166
TscAI	CASTG	2 cut(s)	604, 755
TseFI	GTSAC	4 cut(s)	860, 1253, 2393, 2408
TseI	GCWGC	3 cut(s)	602, 691, 1404
Tsp45I	GTSAC	4 cut(s)	860, 1253, 2393, 2408
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	604, 755
XapI	RAATTY	3 cut(s)	562, 1061, 1595
XceI	RCATGY	7 cut(s)	977, 1082, 1196, 1308, 1512, 1518, 1662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	1047
XmnI	GAANNNNTTC	2 cut(s)	1866, 2061
XspI	CTAG	1 cut(s)	1374
Zsp2I	ATGCAT	1 cut(s)	1247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.