Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

24238389 .. 24241149

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

ATGGAAGCCCTAACGGAGCAAACCGACGTCCACGTCATCCTCTCCGAGCAGCGCAGGGAGCTCTTGGCGGCCAAAATCCTAGACGCGGACCTCGACTTGGCCTTCAATCTCCAAATGCAAGAAGCCATGACCGCCTCTCTGGCGCTCAATCCATCACCGAGTACTTCGCAGTCTCCTCCTCCGTCGCAGCCGTACGAGCCAAACGACGACGTGTTGGACATCGCCGCCACGCTGATGCTGGAGGACGTGGAGAGGTTCTCGCAGGAGTACGAGGACCACGAGCGCAGCGTTTTGGAGGCGAGGAAGGCGAAGGAGGATCTGGACCGTCGGATTCACGACCAGAAGTTCGCGATCGACGTCCGTGACTTGCCGGAGGAATACTGGAGGAATCACGGGGACGTGTACGAACGGCCGTTTTGTACTGACGGGGCGTCGTCGTCGTCGTCGTCTTCGTCGTCGGGAAAAGCTGCGGCGGAGGCAGAGTGTTTGAGATTGTACTGCAAGGGTTTGATTAGTGAAGAATGTGAAGAATGGAAAATGGCGGTGGGTGGAATTGGGGTTGCGATTTGTGAGCCTAGAGATAATCTGGTTTTCGAGGTGAAGAAGAATATGGAGGCGGTGGTTGATGGTGAGAGACTGAGCGATGAGGCTGCGGAGCTTGAGGCTCTGGTTGAAGGGCTTAATAAAGCTCTAACTATGGACTTGAAGAATGTCACATTTTTCTGTGATGATAACAAGCTTTACCAATATTTTACAAACAGAGTGGTTCCTGGAAACAGCAAAATTGCAACACTAGTCAACCAAGTTGCTCTTCTACAAAAAGAATTTGAATCCTGCAACCCTTCACTTGTGGCACGTGGTGATATTAAGTTTGCATTTAAATTTGCAAGAGAGGCTATAGTTTCCCAGATCACCTGGCAAGCAGAAACAAGCAATGGCAAGTGTTTGAAGGAGACTTGTGTCATATGTTATGAAGAAACTGATGTTGCTCAAATGTTTTCAATCGATGGTTGTCTGCACAGGTATTGCATTTCTTGTATGAAACAGCACGTGGAAGTAAGGTTGCTTAATGGGATGGTGGCGCATTGTCCTCATGAAGGCTGCAAATCCGAAGTGAATATTGATAGCTATGAGAATTTCTTCTTGGCACCTAAACTAGTTGAGGTTATGAACCAACGAATCAAGGAGTCTTCTATTAATGTTACAGACAGAGTCTATTGCCAATATCCCAAGTGTTCTGCATTAATGTCCAAGAAGGAGGTCTTAGAATATACCAAAACTTCTTATGGTGGTGCTGAAGAATCTGGAGCCAGAAAATGCATGAAATGCCACTACTATTTTTGTATCAAGTGCTTGGTTCCTTGGCATTTTGAATTGACCTGTGATGAGTACCAAACGTCACACAATTTCCCTAAAGAACATCAAATGCTGAATTCACTGGCTACAAAGAGACTCTGGCGGCAGTGTGTTAAGTGCAACCACATGGTTGAACTTGCACAAGGTTGTTACCACATTACTTGCAGATGTGGATATCAGTTTTGCTACACTTGTGGAGCTGAATGGAAAGACAAGAAACCTTGTTCCTGCCCACTCTGGGACGAGCAGTACATACTTACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

540

Amino Acids

61.47

Weight (kDa)

5.12

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	182 - 299	9.3e-19	Reverse transcriptase-like
IBR	PF01485	395 - 461	3e-09	IBR domain, a half RING-finger domain
Rcat_RNF216	PF26200	477 - 522	1.3e-06	RNF216 Rcat domain
IBR	PF01485	478 - 527	8.8e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AatII	GACGTC	2 cut(s)	30, 360
AccB1I	GGYRCC	1 cut(s)	1147
AccII	CGCG	2 cut(s)	86, 350
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	2 cut(s)	69, 410
AcsI	RAATTY	4 cut(s)	824, 881, 1135, 1432
AcuI	CTGAAG	1 cut(s)	1317
AcvI	CACGTG	2 cut(s)	857, 1051
AcyI	GRCGYC	3 cut(s)	27, 357, 431
AdeI	CACNNNGTG	1 cut(s)	860
AfaI	GTAC	8 cut(s)	163, 194, 269, 404, 421, 497, 1391, 1607
AfiI	CCNNNNNNNGG	4 cut(s)	85, 97, 1097, 1594
AflIII	ACRYGT	2 cut(s)	210, 399
AgsI	TTSAA	8 cut(s)	106, 674, 706, 830, 949, 1002, 1373, 1490
AhdI	GACNNNNNGTC	1 cut(s)	430
AhlI	ACTAGT	2 cut(s)	793, 1156
AjiI	CACGTC	4 cut(s)	34, 211, 247, 400
AjnI	CCWGG	2 cut(s)	769, 914
AjuI	GAANNNNNNNTTGG	4 cut(s)	795, 827, 1127, 1159
AluBI	AGCT	7 cut(s)	61, 467, 658, 689, 739, 1128, 1556
AluI	AGCT	7 cut(s)	61, 467, 658, 689, 739, 1128, 1556
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	4 cut(s)	177, 628, 947, 1444
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	3 cut(s)	69, 99, 410
ApeKI	GCWGC	6 cut(s)	49, 187, 285, 467, 650, 1101
ApoI	RAATTY	4 cut(s)	824, 881, 1135, 1432
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AseI	ATTAAT	2 cut(s)	1197, 1244
Asp700I	GAANNNNTTC	1 cut(s)	1139
AspLEI	GCGC	4 cut(s)	54, 145, 285, 1084
AspS9I	GGNCC	3 cut(s)	88, 274, 322
AsuHPI	GGTGA	5 cut(s)	147, 610, 641, 872, 904
AvaII	GGWCC	3 cut(s)	88, 274, 322
BanI	GGYRCC	1 cut(s)	1147
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	278
BbrPI	CACGTG	2 cut(s)	857, 1051
BbsI	GAAGAC	2 cut(s)	441, 1182
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	6 cut(s)	61, 199, 297, 454, 637, 1088
BccI	CCATC	4 cut(s)	160, 620, 1001, 1069
BceAI	ACGGC	3 cut(s)	175, 397, 425
BcgI	CGANNNNNNTGC	2 cut(s)	632, 666
BciT130I	CCWGG	2 cut(s)	771, 916
BcoDI	GTCTC	4 cut(s)	177, 628, 947, 1444
BcuI	ACTAGT	2 cut(s)	793, 1156
BfaI	CTAG	4 cut(s)	80, 576, 794, 1157
BfmI	CTRYAG	1 cut(s)	897
BfoI	RGCGCY	1 cut(s)	146
BglI	GCCNNNNNGGC	1 cut(s)	140
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	771, 916
Bme18I	GGWCC	3 cut(s)	88, 274, 322
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmgBI	CACGTC	4 cut(s)	34, 211, 247, 400
BmgT120I	GGNCC	3 cut(s)	88, 274, 322
BmiI	GGNNCC	4 cut(s)	768, 1149, 1309, 1359
BmrFI	CCNGG	2 cut(s)	771, 916
BmsI	GCATC	1 cut(s)	225
BoxI	GACNNNNGTC	1 cut(s)	959
BpiI	GAAGAC	2 cut(s)	441, 1182
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	3 cut(s)	260, 403, 1326
BpuEI	CTTGAG	1 cut(s)	680
Bsa29I	ATCGAT	1 cut(s)	1005
BsaAI	YACGTR	2 cut(s)	857, 1051
BsaHI	GRCGYC	3 cut(s)	27, 357, 431
BsaJI	CCNNGG	1 cut(s)	1361
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 97, 1097, 1594
Bse1I	ACTGG	2 cut(s)	386, 1443
Bse3DI	GCAATG	1 cut(s)	940
BseBI	CCWGG	2 cut(s)	771, 916
BseCI	ATCGAT	1 cut(s)	1005
BseDI	CCNNGG	1 cut(s)	1361
BseGI	GGATG	2 cut(s)	36, 1080
BseLI	CCNNNNNNNGG	4 cut(s)	85, 97, 1097, 1594
BseMI	GCAATG	1 cut(s)	940
BseMII	CTCAG	1 cut(s)	629
BseNI	ACTGG	2 cut(s)	386, 1443
BseRI	GAGGAG	2 cut(s)	165, 168
BseX3I	CGGCCG	1 cut(s)	410
BseXI	GCAGC	6 cut(s)	61, 199, 297, 454, 637, 1088
BsgI	GTGCAG	1 cut(s)	1001
Bsh1236I	CGCG	2 cut(s)	86, 350
Bsh1285I	CGRYCG	2 cut(s)	354, 413
BshFI	GGCC	3 cut(s)	71, 101, 412
BshNI	GGYRCC	1 cut(s)	1147
BshVI	ATCGAT	1 cut(s)	1005
BsiEI	CGRYCG	2 cut(s)	354, 413
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	371
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	410, 1610
BslI	CCNNNNNNNGG	4 cut(s)	85, 97, 1097, 1594
BsmAI	GTCTC	4 cut(s)	177, 628, 947, 1444
BsmFI	GGGAC	2 cut(s)	410, 1610
BsnI	GGCC	3 cut(s)	71, 101, 412
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	316, 351, 909
Bsp68I	TCGCGA	1 cut(s)	350
BspANI	GGCC	3 cut(s)	71, 101, 412
BspCNI	CTCAG	1 cut(s)	630
BspDI	ATCGAT	1 cut(s)	1005
BspFNI	CGCG	2 cut(s)	86, 350
BspHI	TCATGA	1 cut(s)	1093
BspLI	GGNNCC	4 cut(s)	768, 1149, 1309, 1359
BspPI	GGATC	1 cut(s)	324
BspQI	GCTCTTC	1 cut(s)	816
BspT107I	GGYRCC	1 cut(s)	1147
BsrDI	GCAATG	1 cut(s)	940
BsrI	ACTGG	2 cut(s)	386, 1443
BssECI	CCNNGG	1 cut(s)	1361
BssMI	GATC	3 cut(s)	316, 351, 909
BssNI	GRCGYC	3 cut(s)	27, 357, 431
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	1361
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	2 cut(s)	771, 916
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	816
BstACI	GRCGYC	3 cut(s)	27, 357, 431
BstAPI	GCANNNNNTGC	1 cut(s)	1326
BstBAI	YACGTR	2 cut(s)	857, 1051
BstC8I	GCNNGC	1 cut(s)	921
BstDEI	CTNAG	2 cut(s)	638, 1264
BstENI	CCTNNNNNAGG	1 cut(s)	1095
BstF5I	GGATG	2 cut(s)	36, 1080
BstFNI	CGCG	2 cut(s)	86, 350
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	4 cut(s)	54, 145, 285, 1084
BstKTI	GATC	3 cut(s)	319, 354, 912
BstMAI	GTCTC	4 cut(s)	177, 628, 947, 1444
BstMBI	GATC	3 cut(s)	316, 351, 909
BstMCI	CGRYCG	2 cut(s)	354, 413
BstMWI	GCNNNNNNNGC	8 cut(s)	58, 131, 140, 196, 305, 476, 893, 1326
BstNI	CCWGG	2 cut(s)	771, 916
BstPAI	GACNNNNGTC	1 cut(s)	959
BstSCI	CCNGG	2 cut(s)	769, 914
BstSFI	CTRYAG	1 cut(s)	897
BstUI	CGCG	2 cut(s)	86, 350
BstV1I	GCAGC	6 cut(s)	61, 199, 297, 454, 637, 1088
BstV2I	GAAGAC	2 cut(s)	441, 1182
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BstZI	CGGCCG	1 cut(s)	410
Bsu15I	ATCGAT	1 cut(s)	1005
BsuRI	GGCC	3 cut(s)	71, 101, 412
BsuTUI	ATCGAT	1 cut(s)	1005
BtgZI	GCGATG	2 cut(s)	205, 657
BtrI	CACGTC	4 cut(s)	34, 211, 247, 400
BtsCI	GGATG	2 cut(s)	36, 1080
BtsI	GCAGTG	1 cut(s)	1469
BtsIMutI	CAGTG	2 cut(s)	1436, 1469
BtuMI	TCGCGA	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	921
CciI	TCATGA	1 cut(s)	1093
CfoI	GCGC	4 cut(s)	54, 145, 285, 1084
Cfr13I	GGNCC	3 cut(s)	88, 274, 322
ClaI	ATCGAT	1 cut(s)	1005
CseI	GACGC	2 cut(s)	92, 420
Csp6I	GTAC	8 cut(s)	162, 193, 268, 403, 420, 496, 1390, 1606
CspCI	CAANNNNNGTGG	4 cut(s)	744, 779, 1499, 1534
CviAII	CATG	4 cut(s)	127, 1094, 1321, 1483
CviQI	GTAC	8 cut(s)	162, 193, 268, 403, 420, 496, 1390, 1606
DdeI	CTNAG	2 cut(s)	638, 1264
DpnI	GATC	3 cut(s)	318, 353, 911
DpnII	GATC	3 cut(s)	316, 351, 909
DraI	TTTAAA	1 cut(s)	880
DraIII	CACNNNGTG	1 cut(s)	860
DrdI	GACNNNNNNGTC	1 cut(s)	32
DriI	GACNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	2 cut(s)	69, 410
EagI	CGGCCG	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	816
Eam1105I	GACNNNNNGTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	816
EciI	GGCGGA	1 cut(s)	488
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	1361
Eco24I	GRGCYC	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	1532
Eco47I	GGWCC	3 cut(s)	88, 274, 322
Eco52I	CGGCCG	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	1317
Eco72I	CACGTG	2 cut(s)	857, 1051
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	1095
EcoRI	GAATTC	1 cut(s)	1432
EcoRII	CCWGG	2 cut(s)	769, 914
EcoRV	GATATC	1 cut(s)	1532
EcoT14I	CCWWGG	1 cut(s)	1361
EcoT22I	ATGCAT	1 cut(s)	1322
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	1361
FaeI	CATG	4 cut(s)	130, 1097, 1324, 1486
FalI	AAGNNNNNCTT	4 cut(s)	795, 827, 1247, 1279
FaqI	GGGAC	2 cut(s)	410, 1610
FatI	CATG	4 cut(s)	126, 1093, 1320, 1482
FauNDI	CATATG	1 cut(s)	965
FokI	GGATG	2 cut(s)	23, 1087
FriOI	GRGCYC	1 cut(s)	63
FspBI	CTAG	4 cut(s)	80, 576, 794, 1157
GlaI	GCGC	4 cut(s)	53, 144, 284, 1083
GsuI	CTGGAG	3 cut(s)	260, 403, 1326
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	71, 101, 412
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	2 cut(s)	92, 420
HhaI	GCGC	4 cut(s)	54, 145, 285, 1084
Hin1I	GRCGYC	3 cut(s)	27, 357, 431
Hin1II	CATG	4 cut(s)	130, 1097, 1324, 1486
Hin6I	GCGC	4 cut(s)	52, 143, 283, 1082
HinP1I	GCGC	4 cut(s)	52, 143, 283, 1082
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	8 cut(s)	331, 388, 830, 1179, 1187, 1212, 1301, 1452
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	5 cut(s)	147, 610, 641, 872, 904
Hpy166II	GTNNAC	3 cut(s)	31, 403, 799
Hpy188I	TCNGA	3 cut(s)	46, 330, 1111
Hpy188III	TCNNGA	6 cut(s)	320, 335, 349, 459, 1094, 1305
Hpy8I	GTNNAC	3 cut(s)	31, 403, 799
HpyAV	CCTTC	8 cut(s)	112, 298, 304, 668, 852, 943, 1091, 1249
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	9 cut(s)	27, 33, 210, 246, 357, 399, 856, 1050, 1397
HpyF10VI	GCNNNNNNNGC	8 cut(s)	58, 131, 140, 196, 305, 476, 893, 1326
HpyF3I	CTNAG	2 cut(s)	638, 1264
HpySE526I	ACGT	9 cut(s)	27, 33, 210, 246, 357, 399, 856, 1050, 1397
Hsp92I	GRCGYC	3 cut(s)	27, 357, 431
Hsp92II	CATG	4 cut(s)	130, 1097, 1324, 1486
HspAI	GCGC	4 cut(s)	52, 143, 283, 1082
Kzo9I	GATC	3 cut(s)	316, 351, 909
LguI	GCTCTTC	1 cut(s)	816
LmnI	GCTCC	5 cut(s)	16, 58, 655, 1307, 1553
Lsp1109I	GCAGC	6 cut(s)	61, 199, 297, 454, 637, 1088
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	4 cut(s)	80, 576, 794, 1157
MaeII	ACGT	9 cut(s)	27, 33, 210, 246, 357, 399, 856, 1050, 1397
MaeIII	GTNAC	5 cut(s)	362, 712, 1201, 1398, 1505
MalI	GATC	3 cut(s)	318, 353, 911
MboI	GATC	3 cut(s)	316, 351, 909
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	8 cut(s)	552, 783, 824, 881, 1135, 1373, 1405, 1432
MlyI	GAGTC	3 cut(s)	1196, 1221, 1446
MmeI	TCCRAC	2 cut(s)	195, 308
Mph1103I	ATGCAT	1 cut(s)	1322
MroXI	GAANNNNTTC	1 cut(s)	1139
MseI	TTAA	7 cut(s)	681, 867, 879, 1068, 1197, 1244, 1470
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	771, 916
MvaI	CCWGG	2 cut(s)	771, 916
MvnI	CGCG	2 cut(s)	86, 350
MwoI	GCNNNNNNNGC	8 cut(s)	58, 131, 140, 196, 305, 476, 893, 1326
NdeI	CATATG	1 cut(s)	965
NdeII	GATC	3 cut(s)	316, 351, 909
NlaIII	CATG	4 cut(s)	130, 1097, 1324, 1486
NlaIV	GGNNCC	4 cut(s)	768, 1149, 1309, 1359
NmuCI	GTSAC	3 cut(s)	362, 712, 1398
NruI	TCGCGA	1 cut(s)	350
NsiI	ATGCAT	1 cut(s)	1322
PagI	TCATGA	1 cut(s)	1093
PciSI	GCTCTTC	1 cut(s)	816
PcsI	WCGNNNNNNNCGW	9 cut(s)	90, 201, 276, 285, 354, 440, 443, 449, 452
PdmI	GAANNNNTTC	1 cut(s)	1139
PfeI	GAWTC	5 cut(s)	331, 388, 830, 1179, 1301
Pfl23II	CGTACG	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	1211
PfoI	TCCNGGA	1 cut(s)	769
Ple19I	CGATCG	1 cut(s)	354
PleI	GAGTC	3 cut(s)	1195, 1220, 1446
PmaCI	CACGTG	2 cut(s)	857, 1051
PmlI	CACGTG	2 cut(s)	857, 1051
PpsI	GAGTC	3 cut(s)	1195, 1220, 1446
Ppu21I	YACGTR	2 cut(s)	857, 1051
PshAI	GACNNNNGTC	1 cut(s)	959
PshBI	ATTAAT	2 cut(s)	1197, 1244
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	769, 914
PspCI	CACGTG	2 cut(s)	857, 1051
PspGI	CCWGG	2 cut(s)	769, 914
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	4 cut(s)	768, 1149, 1309, 1359
PspPI	GGNCC	3 cut(s)	88, 274, 322
PsuI	RGATCY	1 cut(s)	316
PsyI	GACNNNGTC	1 cut(s)	1211
PvuI	CGATCG	1 cut(s)	354
RruI	TCGCGA	1 cut(s)	350
RsaI	GTAC	8 cut(s)	163, 194, 269, 404, 421, 497, 1391, 1607
RsaNI	GTAC	8 cut(s)	162, 193, 268, 403, 420, 496, 1390, 1606
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	816
SaqAI	TTAA	7 cut(s)	681, 867, 879, 1068, 1197, 1244, 1470
Sau3AI	GATC	3 cut(s)	316, 351, 909
Sau96I	GGNCC	3 cut(s)	88, 274, 322
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	3 cut(s)	1196, 1221, 1446
ScrFI	CCNGG	2 cut(s)	771, 916
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	897
SinI	GGWCC	3 cut(s)	88, 274, 322
SmiI	ATTTAAAT	1 cut(s)	880
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
SpeI	ACTAGT	2 cut(s)	793, 1156
Sse9I	AATT	8 cut(s)	552, 783, 824, 881, 1135, 1373, 1405, 1432
SspI	AATATT	2 cut(s)	749, 1120
SspMI	CTAG	4 cut(s)	80, 576, 794, 1157
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	769, 914
StyI	CCWWGG	1 cut(s)	1361
SwaI	ATTTAAAT	1 cut(s)	880
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	9 cut(s)	30, 36, 213, 249, 360, 402, 859, 1053, 1400
TaqI	TCGA	4 cut(s)	93, 354, 594, 1005
TasI	AATT	8 cut(s)	552, 783, 824, 881, 1135, 1373, 1405, 1432
TatI	WGTACW	4 cut(s)	161, 419, 495, 1605
TauI	GCSGC	4 cut(s)	71, 227, 473, 1462
TfiI	GAWTC	5 cut(s)	331, 388, 830, 1179, 1301
Tru1I	TTAA	7 cut(s)	681, 867, 879, 1068, 1197, 1244, 1470
Tru9I	TTAA	7 cut(s)	681, 867, 879, 1068, 1197, 1244, 1470
TscAI	CASTG	2 cut(s)	1443, 1469
TseFI	GTSAC	3 cut(s)	362, 712, 1398
TseI	GCWGC	6 cut(s)	49, 187, 285, 467, 650, 1101
Tsp45I	GTSAC	3 cut(s)	362, 712, 1398
TspDTI	ATGAA	5 cut(s)	987, 1055, 1110, 1184, 1337
TspGWI	ACGGA	3 cut(s)	29, 171, 350
TspRI	CASTG	2 cut(s)	1443, 1469
Tth111I	GACNNNGTC	1 cut(s)	1211
VpaK11BI	GGWCC	3 cut(s)	88, 274, 322
VspI	ATTAAT	2 cut(s)	1197, 1244
XagI	CCTNNNNNAGG	1 cut(s)	1095
XapI	RAATTY	4 cut(s)	824, 881, 1135, 1432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	1139
XspI	CTAG	4 cut(s)	80, 576, 794, 1157
ZraI	GACGTC	2 cut(s)	28, 358
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	1322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.