Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

24228318 .. 24231989

Gene Structure 3672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2352 bp

ATGGCCAGTACCAGCAGAGTCCGCCGCGACGACGACGACGACGACTACGACTTCATGGACATCGATACGCTCGACTACGACGCCGAAATCGCCTTCAACCTCCAGCTCCAAGAAGCCCTGACCGCCTCCCTCGCCCCTCAACCACCCTCCTCCGCCGCTCGAAACGACGCCGCGTCGGTACTCGTCCGACTGGAGCAGGCTCTGAAAGACCGCGTGCAGAGCGAGATCGAACTGCGGCGGGCGAGGGACGATCTCGCGCGTGTGATTCACGACGCCAAGGTCGCGAGGGAGATCACGGACATTCCCGACGACGAGTGGGAAAAGTCCGGCGGCGACTTCGCCAAGCCCTTCGACGGAGGCTCGTCGGGGGCGGCGGCGAGTGTGGAGAGCGAGGAGGGCGAGTTCAGGCTCTATTTCAAGGGTTTGGTGAGCGAGGAACAGGTTGGGGATCGGAAATCGGTGCTGGCCGGGATCGGAGTAGCAATATGCGACCCCAGGGATAATCTGGTGTTCGAGGTTAGGAAACCGCTGATTGGGAATGGGCTTAGTAGAAATTCGGCCCAATTGAAGGCCTTGATCGAAGGGCTCACTGCTGCTCTGTCTTTGGGGCTGAAGCGAATCACCTTCTTCTGCGATAACTATCCAATCTTTCAGTTTGTTAACGGGAAATGGCCAGCAAAGCAGCGCAAGGTTGTAAATCTTGTTAATCAGGTTAAGAGCCTTCGAAGTAAGTTTACGCAGTGCAACTCCAGGCTTGTGCCTCTGTTGGAAATTAAGTTTGCATTTAAACTTGCCAGAGATGCCATAGAGTCTCAGTCTCTGTCTCAGATGAAGCCTGCAGAATCTACCACTCACAAGAATGTGAAAGAGACCTGTGTGATTTGTATGGAAGATAGTGATGTTAGTCAGATGTTTTCAGTTGATGGCTGCCTACATCGATATTGCTATTCTTGTATGAAGCAGCATGTGGAGGTGAAGTTGCTTCATGGGATCCTTCCTAAATGCCCTCATGAAGACTGTAAGTCTGACCTTAGTGTCGACAGTTGTGCAAAATTCCTGACACCTAAACATGTTGACACCATGCGTCAACGTATAAAGGAAGCTTCAATTCCTGCAACTGAGAGAGTTTATTGCCCATATCCAAGGTGCTCTCTCTTAATGTCAAAAAGCGAGGTTTTACAACATGCTAAAAAAACCTTGATGGGGGCTGTGGAACAATCAGGACTTAGGAGATGCATGAAATGTCACTACCTTTTTTGCATCAATTGTAAAGTCCCTTGGCACAGAAACATTACATGCGCTGACTACAAAAAGTCGAATCCTAATCCTCCAGAAGAGGACACAAAGCTAAAGTTCCTTGCCTCTAGTAAGCTTTGGCGCCAATGTGTGAAGTGCAGCCATATGATTGAACTTCTTGAAGGTTGCTACCACATGACTTGCAGGTGTAATTATGAGTTCTGCTATAATTGTGGAGCTGAGTGGAAAGACAAGAAGGCAACATGTACATGCCCGCTGTGGATTGAGGATAATATTTTGCATGAGGATGATGATTTTGATGGAGAGTCGGATTCTGAATCTGAAGTTGAATTTAATTTTATACCGTGGTTGGGAATCTGCATTTTCAGTATCATGCTCGTTGGAACTGAAAGCTGGTGGATAGTAACTGTATTCATGTCATCTTGGTTGTCATTCTCATTCATTTATTGTTTCTGCAGAAGTGAGCATGATAGTTGCCATTATTGTGGAGCTGAGTGGAAAGACAGAAAGGCAACATGTTCATGCCCACTATCAGATGAGGATAGCAGTTTGGATGGCCAAGTTGATAAATATTTTGAGGAGGAAGAAGATGATGAAGATGAGGACTACAATGATGATGAATATCAAAGTGAAGATGAGGAGGAAAAAGAAGTTGGAGGTCATAAGTATGAAAACGATAGTGAAGAAGAATATGAAAGTGAAAGCGGTGTAAGTGAGGACGAGGTTCAGGAGAGACAGGTTCAAGAGCAGTTTCTGGGGAAAGATACCGAGAATCATATCTTGTCTGATGAAGGTGAATATTATGGGGTGGAGGAAGAAGAAGATGACAACAACGGCGAGGACTTCAATAATAGTGAGTGTCAAAGTGAGGATGAGGAGGAAAATGAAGTTGGGGGTGATGAATATGAAAACGAAGGCATTGTAGTTGAGGATGAGGTGCAGGAGGGACAGATTCAAGAGGAGGTTTTGGACCTGGATATGGAGGATCATATCTCGTCGTATGACGATGATATATATTTTGATGTAGAGTATGAGGAAGATGAAGAGGAGAACTATTGTGACTTCGATTGTTGTGACTCTGACTCGGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

783

Amino Acids

89.6

Weight (kDa)

4.39

Isoelectric Point (pI)

58.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	152 - 268	1.5e-25	Reverse transcriptase-like
IBR	PF01485	372 - 433	1.6e-10	IBR domain, a half RING-finger domain
IBR	PF01485	451 - 501	2.5e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	461 - 498	6.4e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1431
AasI	GACNNNNNNGTC	2 cut(s)	278, 1034
Acc36I	ACCTGC	1 cut(s)	1431
AccB1I	GGYRCC	1 cut(s)	1377
AccBSI	CCGCTC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	1038
AccII	CGCG	6 cut(s)	27, 173, 213, 257, 259, 284
AclWI	GGATC	5 cut(s)	456, 479, 985, 998, 2250
AcoI	YGGCCR	4 cut(s)	3, 465, 671, 1813
AcsI	RAATTY	3 cut(s)	553, 1052, 1586
AcuI	CTGAAG	2 cut(s)	632, 1599
AcyI	GRCGYC	4 cut(s)	81, 168, 273, 1378
AfaI	GTAC	3 cut(s)	10, 180, 1504
AfiI	CCNNNNNNNGG	6 cut(s)	353, 533, 568, 1203, 1607, 2236
AflIII	ACRYGT	3 cut(s)	1069, 1499, 1772
AhdI	GACNNNNNGTC	2 cut(s)	172, 1021
AjnI	CCWGG	3 cut(s)	494, 749, 2229
AjuI	GAANNNNNNNTTGG	4 cut(s)	1893, 1925, 2130, 2162
AloI	GAACNNNNNNTCC	2 cut(s)	386, 418
AluBI	AGCT	7 cut(s)	106, 1103, 1348, 1372, 1475, 1650, 1748
AluI	AGCT	7 cut(s)	106, 1103, 1348, 1372, 1475, 1650, 1748
Alw21I	GWGCWC	1 cut(s)	1151
Alw26I	GTCTC	5 cut(s)	816, 822, 828, 863, 1984
AlwI	GGATC	5 cut(s)	456, 479, 985, 998, 2250
AlwNI	CAGNNNCTG	3 cut(s)	202, 820, 2011
AoxI	GGCC	6 cut(s)	3, 465, 558, 570, 671, 1813
ApeKI	GCWGC	5 cut(s)	593, 682, 927, 961, 1395
ApoI	RAATTY	3 cut(s)	553, 1052, 1586
AspLEI	GCGC	4 cut(s)	259, 687, 1301, 1380
AspS9I	GGNCC	2 cut(s)	559, 2227
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	5 cut(s)	439, 613, 985, 2063, 2165
AsuII	TTCGAA	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	2227
BalI	TGGCCA	3 cut(s)	5, 673, 1815
BamHI	GGATCC	1 cut(s)	990
BanI	GGYRCC	1 cut(s)	1377
BanII	GRGCYC	1 cut(s)	588
BarI	GAAGNNNNNNTAC	2 cut(s)	718, 750
BbsI	GAAGAC	1 cut(s)	1020
Bbv12I	GWGCWC	1 cut(s)	1151
BbvI	GCAGC	5 cut(s)	580, 694, 914, 973, 1407
BccI	CCATC	4 cut(s)	917, 1195, 1550, 1805
BceAI	ACGGC	1 cut(s)	2107
BcgI	CGANNNNNNTGC	2 cut(s)	1028, 1062
BciT130I	CCWGG	3 cut(s)	496, 751, 2231
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	5 cut(s)	816, 822, 828, 863, 1984
BfaI	CTAG	1 cut(s)	1365
BfmI	CTRYAG	2 cut(s)	837, 1711
BfoI	RGCGCY	1 cut(s)	1381
BfuAI	ACCTGC	1 cut(s)	1431
Bme1390I	CCNGG	4 cut(s)	469, 496, 751, 2231
Bme18I	GGWCC	1 cut(s)	2227
BmeRI	GACNNNNNGTC	2 cut(s)	172, 1021
BmgT120I	GGNCC	2 cut(s)	559, 2227
BmiI	GGNNCC	2 cut(s)	992, 1379
BmrFI	CCNGG	4 cut(s)	469, 496, 751, 2231
BmsI	GCATC	3 cut(s)	790, 1223, 1269
BpiI	GAAGAC	1 cut(s)	1020
BpmI	CTGGAG	4 cut(s)	86, 212, 733, 1314
Bpu14I	TTCGAA	1 cut(s)	724
BpuMI	CCSGG	1 cut(s)	469
Bsa29I	ATCGAT	2 cut(s)	63, 937
BsaBI	GATNNNNATC	2 cut(s)	639, 1878
BsaHI	GRCGYC	4 cut(s)	81, 168, 273, 1378
BsaI	GGTCTC	1 cut(s)	863
BsaJI	CCNNGG	6 cut(s)	276, 494, 495, 1142, 1277, 1601
BsaXI	ACNNNNNCTCC	4 cut(s)	386, 416, 962, 992
Bsc4I	CCNNNNNNNGG	6 cut(s)	353, 533, 568, 1203, 1607, 2236
Bse1I	ACTGG	2 cut(s)	6, 195
Bse8I	GATNNNNATC	2 cut(s)	639, 1878
BseBI	CCWGG	3 cut(s)	496, 751, 2231
BseCI	ATCGAT	2 cut(s)	63, 937
BseDI	CCNNGG	6 cut(s)	276, 494, 495, 1142, 1277, 1601
BseGI	GGATG	4 cut(s)	1549, 1816, 2134, 2194
BseJI	GATNNNNATC	2 cut(s)	639, 1878
BseLI	CCNNNNNNNGG	6 cut(s)	353, 533, 568, 1203, 1607, 2236
BseMII	CTCAG	5 cut(s)	827, 839, 1110, 1467, 1740
BseNI	ACTGG	2 cut(s)	6, 195
BseRI	GAGGAG	7 cut(s)	139, 407, 1850, 1910, 2147, 2231, 2318
BseXI	GCAGC	5 cut(s)	580, 694, 914, 973, 1407
BsgI	GTGCAG	3 cut(s)	236, 1414, 2216
Bsh1236I	CGCG	6 cut(s)	27, 173, 213, 257, 259, 284
BshFI	GGCC	6 cut(s)	5, 467, 560, 572, 673, 1815
BshNI	GGYRCC	1 cut(s)	1377
BshVI	ATCGAT	2 cut(s)	63, 937
BsiHKAI	GWGCWC	1 cut(s)	1151
BsiSI	CCGG	2 cut(s)	327, 468
BslFI	GGGAC	3 cut(s)	260, 1259, 2217
BslI	CCNNNNNNNGG	6 cut(s)	353, 533, 568, 1203, 1607, 2236
BsmAI	GTCTC	5 cut(s)	816, 822, 828, 863, 1984
BsmFI	GGGAC	3 cut(s)	260, 1259, 2217
BsnI	GGCC	6 cut(s)	5, 467, 560, 572, 673, 1815
Bso31I	GGTCTC	1 cut(s)	863
Bsp119I	TTCGAA	1 cut(s)	724
Bsp1286I	GDGCHC	2 cut(s)	588, 1151
Bsp1407I	TGTACA	1 cut(s)	1502
Bsp143I	GATC	8 cut(s)	225, 250, 291, 448, 471, 576, 990, 2242
Bsp68I	TCGCGA	1 cut(s)	284
BspANI	GGCC	6 cut(s)	5, 467, 560, 572, 673, 1815
BspCNI	CTCAG	5 cut(s)	826, 838, 1111, 1468, 1741
BspDI	ATCGAT	2 cut(s)	63, 937
BspFNI	CGCG	6 cut(s)	27, 173, 213, 257, 259, 284
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	2 cut(s)	992, 1379
BspMAI	CTGCAG	2 cut(s)	841, 1715
BspMI	ACCTGC	1 cut(s)	1431
BspPI	GGATC	5 cut(s)	456, 479, 985, 998, 2250
BspT104I	TTCGAA	1 cut(s)	724
BspT107I	GGYRCC	1 cut(s)	1377
BspTNI	GGTCTC	1 cut(s)	863
BsrBI	CCGCTC	1 cut(s)	158
BsrGI	TGTACA	1 cut(s)	1502
BsrI	ACTGG	2 cut(s)	6, 195
BssECI	CCNNGG	6 cut(s)	276, 494, 495, 1142, 1277, 1601
BssMI	GATC	8 cut(s)	225, 250, 291, 448, 471, 576, 990, 2242
BssNI	GRCGYC	4 cut(s)	81, 168, 273, 1378
BssT1I	CCWWGG	3 cut(s)	276, 1142, 1277
Bst2UI	CCWGG	3 cut(s)	496, 751, 2231
Bst4CI	ACNGT	4 cut(s)	1019, 1043, 1602, 1666
Bst6I	CTCTTC	2 cut(s)	1329, 2295
BstACI	GRCGYC	4 cut(s)	81, 168, 273, 1378
BstAUI	TGTACA	1 cut(s)	1502
BstBI	TTCGAA	1 cut(s)	724
BstC8I	GCNNGC	7 cut(s)	198, 215, 240, 465, 675, 837, 1511
BstDEI	CTNAG	8 cut(s)	545, 813, 825, 1031, 1119, 1226, 1476, 1749
BstDSI	CCRYGG	1 cut(s)	1601
BstF5I	GGATG	4 cut(s)	1549, 1816, 2134, 2194
BstFNI	CGCG	6 cut(s)	27, 173, 213, 257, 259, 284
BstH2I	RGCGCY	1 cut(s)	1381
BstHHI	GCGC	4 cut(s)	259, 687, 1301, 1380
BstKTI	GATC	8 cut(s)	228, 253, 294, 451, 474, 579, 993, 2245
BstMAI	GTCTC	5 cut(s)	816, 822, 828, 863, 1984
BstMBI	GATC	8 cut(s)	225, 250, 291, 448, 471, 576, 990, 2242
BstMWI	GCNNNNNNNGC	9 cut(s)	21, 89, 122, 131, 219, 281, 396, 679, 800
BstNI	CCWGG	3 cut(s)	496, 751, 2231
BstNSI	RCATGY	7 cut(s)	968, 1073, 1187, 1299, 1503, 1509, 1776
BstSCI	CCNGG	4 cut(s)	467, 494, 749, 2229
BstSFI	CTRYAG	2 cut(s)	837, 1711
BstUI	CGCG	6 cut(s)	27, 173, 213, 257, 259, 284
BstV1I	GCAGC	5 cut(s)	580, 694, 914, 973, 1407
BstV2I	GAAGAC	1 cut(s)	1020
BstX2I	RGATCY	1 cut(s)	990
BstXI	CCANNNNNNTGG	1 cut(s)	1742
BstYI	RGATCY	1 cut(s)	990
Bsu15I	ATCGAT	2 cut(s)	63, 937
BsuRI	GGCC	6 cut(s)	5, 467, 560, 572, 673, 1815
BsuTUI	ATCGAT	2 cut(s)	63, 937
BtgI	CCRYGG	1 cut(s)	1601
BtsCI	GGATG	4 cut(s)	1549, 1816, 2134, 2194
BtsI	GCAGTG	2 cut(s)	588, 746
BtsIMutI	CAGTG	2 cut(s)	588, 746
BtuMI	TCGCGA	1 cut(s)	284
BveI	ACCTGC	1 cut(s)	1431
Cac8I	GCNNGC	7 cut(s)	198, 215, 240, 465, 675, 837, 1511
CaiI	CAGNNNCTG	3 cut(s)	202, 820, 2011
CciI	TCATGA	1 cut(s)	1009
CfoI	GCGC	4 cut(s)	259, 687, 1301, 1380
Cfr13I	GGNCC	2 cut(s)	559, 2227
ClaI	ATCGAT	2 cut(s)	63, 937
CseI	GACGC	5 cut(s)	89, 162, 176, 281, 1073
Csp6I	GTAC	3 cut(s)	9, 179, 1503
CspCI	CAANNNNNGTGG	2 cut(s)	1418, 1453
CviQI	GTAC	3 cut(s)	9, 179, 1503
DdeI	CTNAG	8 cut(s)	545, 813, 825, 1031, 1119, 1226, 1476, 1749
DinI	GGCGCC	1 cut(s)	1379
DpnI	GATC	8 cut(s)	227, 252, 293, 450, 473, 578, 992, 2244
DpnII	GATC	8 cut(s)	225, 250, 291, 448, 471, 576, 990, 2242
DraI	TTTAAA	1 cut(s)	787
DrdI	GACNNNNNNGTC	2 cut(s)	278, 1034
DriI	GACNNNNNGTC	2 cut(s)	172, 1021
DseDI	GACNNNNNNGTC	2 cut(s)	278, 1034
EaeI	YGGCCR	4 cut(s)	3, 465, 671, 1813
Eam1104I	CTCTTC	2 cut(s)	1329, 2295
Eam1105I	GACNNNNNGTC	2 cut(s)	172, 1021
EarI	CTCTTC	2 cut(s)	1329, 2295
EciI	GGCGGA	2 cut(s)	11, 142
Eco130I	CCWWGG	3 cut(s)	276, 1142, 1277
Eco147I	AGGCCT	1 cut(s)	572
Eco24I	GRGCYC	1 cut(s)	588
Eco31I	GGTCTC	1 cut(s)	863
Eco47I	GGWCC	1 cut(s)	2227
Eco57I	CTGAAG	2 cut(s)	632, 1599
EcoRII	CCWGG	3 cut(s)	494, 749, 2229
EcoT14I	CCWWGG	3 cut(s)	276, 1142, 1277
EcoT22I	ATGCAT	1 cut(s)	1238
EcoT38I	GRGCYC	1 cut(s)	588
EgeI	GGCGCC	1 cut(s)	1379
EheI	GGCGCC	1 cut(s)	1379
ErhI	CCWWGG	3 cut(s)	276, 1142, 1277
FaqI	GGGAC	3 cut(s)	260, 1259, 2217
FauI	CCCGC	2 cut(s)	231, 1518
FauNDI	CATATG	1 cut(s)	1401
FblI	GTMKAC	1 cut(s)	1038
FokI	GGATG	4 cut(s)	1556, 1823, 2141, 2201
FriOI	GRGCYC	1 cut(s)	588
FspBI	CTAG	1 cut(s)	1365
GlaI	GCGC	4 cut(s)	258, 686, 1300, 1379
GsuI	CTGGAG	4 cut(s)	86, 212, 733, 1314
HaeII	RGCGCY	1 cut(s)	1381
HaeIII	GGCC	6 cut(s)	5, 467, 560, 572, 673, 1815
HapII	CCGG	2 cut(s)	327, 468
HgaI	GACGC	5 cut(s)	89, 162, 176, 281, 1073
HhaI	GCGC	4 cut(s)	259, 687, 1301, 1380
Hin1I	GRCGYC	4 cut(s)	81, 168, 273, 1378
Hin6I	GCGC	4 cut(s)	257, 685, 1299, 1378
HinP1I	GCGC	4 cut(s)	257, 685, 1299, 1378
HincII	GTYRAC	4 cut(s)	661, 1039, 1075, 1088
HindII	GTYRAC	4 cut(s)	661, 1039, 1075, 1088
HindIII	AAGCTT	2 cut(s)	1101, 1370
HpaI	GTTAAC	1 cut(s)	661
HpaII	CCGG	2 cut(s)	327, 468
HphI	GGTGA	5 cut(s)	439, 613, 985, 2063, 2165
Hpy166II	GTNNAC	5 cut(s)	661, 735, 1039, 1075, 1088
Hpy8I	GTNNAC	5 cut(s)	661, 735, 1039, 1075, 1088
HpyCH4III	ACNGT	4 cut(s)	1019, 1043, 1602, 1666
HpyCH4IV	ACGT	1 cut(s)	1090
HpyF10VI	GCNNNNNNNGC	9 cut(s)	21, 89, 122, 131, 219, 281, 396, 679, 800
HpyF3I	CTNAG	8 cut(s)	545, 813, 825, 1031, 1119, 1226, 1476, 1749
HpySE526I	ACGT	1 cut(s)	1090
Hsp92I	GRCGYC	4 cut(s)	81, 168, 273, 1378
HspAI	GCGC	4 cut(s)	257, 685, 1299, 1378
KasI	GGCGCC	1 cut(s)	1377
KspAI	GTTAAC	1 cut(s)	661
Kzo9I	GATC	8 cut(s)	225, 250, 291, 448, 471, 576, 990, 2242
LmnI	GCTCC	4 cut(s)	111, 193, 1472, 1745
Lsp1109I	GCAGC	5 cut(s)	580, 694, 914, 973, 1407
LweI	GCATC	3 cut(s)	790, 1223, 1269
MaeI	CTAG	1 cut(s)	1365
MaeII	ACGT	1 cut(s)	1090
MaeIII	GTNAC	4 cut(s)	1244, 1660, 2315, 2330
MalI	GATC	8 cut(s)	227, 252, 293, 450, 473, 578, 992, 2244
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	8 cut(s)	225, 250, 291, 448, 471, 576, 990, 2242
MfeI	CAATTG	2 cut(s)	563, 1264
MflI	RGATCY	1 cut(s)	990
MhlI	GDGCHC	2 cut(s)	588, 1151
MlsI	TGGCCA	3 cut(s)	5, 673, 1815
MluNI	TGGCCA	3 cut(s)	5, 673, 1815
Mly113I	GGCGCC	1 cut(s)	1378
MlyI	GAGTC	5 cut(s)	27, 818, 1571, 2327, 2333
MmeI	TCCRAC	5 cut(s)	211, 747, 1545, 1618, 1891
Mox20I	TGGCCA	3 cut(s)	5, 673, 1815
Mph1103I	ATGCAT	1 cut(s)	1238
MscI	TGGCCA	3 cut(s)	5, 673, 1815
MseI	TTAA	7 cut(s)	660, 705, 714, 774, 786, 1157, 1590
MslI	CAYNNNNRTG	6 cut(s)	858, 1504, 1542, 1740, 1777, 1923
Msp20I	TGGCCA	3 cut(s)	5, 673, 1815
MspA1I	CMGCKG	2 cut(s)	529, 1513
MspI	CCGG	2 cut(s)	327, 468
MspR9I	CCNGG	4 cut(s)	469, 496, 751, 2231
MunI	CAATTG	2 cut(s)	563, 1264
MvaI	CCWGG	3 cut(s)	496, 751, 2231
MvnI	CGCG	6 cut(s)	27, 173, 213, 257, 259, 284
MwoI	GCNNNNNNNGC	9 cut(s)	21, 89, 122, 131, 219, 281, 396, 679, 800
NarI	GGCGCC	1 cut(s)	1378
NciI	CCSGG	1 cut(s)	469
NdeI	CATATG	1 cut(s)	1401
NdeII	GATC	8 cut(s)	225, 250, 291, 448, 471, 576, 990, 2242
NlaIV	GGNNCC	2 cut(s)	992, 1379
NmuCI	GTSAC	3 cut(s)	1244, 2315, 2330
NruI	TCGCGA	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	1238
NspI	RCATGY	7 cut(s)	968, 1073, 1187, 1299, 1503, 1509, 1776
NspV	TTCGAA	1 cut(s)	724
PagI	TCATGA	1 cut(s)	1009
PaqCI	CACCTGC	1 cut(s)	1431
PasI	CCCWGGG	1 cut(s)	495
PceI	AGGCCT	1 cut(s)	572
PciI	ACATGT	3 cut(s)	1069, 1499, 1772
PcsI	WCGNNNNNNNCGW	4 cut(s)	36, 39, 45, 69
PfeI	GAWTC	9 cut(s)	265, 618, 842, 1318, 1568, 1574, 1611, 2029, 2209
PleI	GAGTC	5 cut(s)	26, 817, 1570, 2327, 2333
PluTI	GGCGCC	1 cut(s)	1381
PpsI	GAGTC	5 cut(s)	26, 817, 1570, 2327, 2333
PscI	ACATGT	3 cut(s)	1069, 1499, 1772
Psp6I	CCWGG	3 cut(s)	494, 749, 2229
PspGI	CCWGG	3 cut(s)	494, 749, 2229
PspN4I	GGNNCC	2 cut(s)	992, 1379
PspPI	GGNCC	2 cut(s)	559, 2227
PstI	CTGCAG	2 cut(s)	841, 1715
PstNI	CAGNNNCTG	3 cut(s)	202, 820, 2011
PsuI	RGATCY	1 cut(s)	990
RruI	TCGCGA	1 cut(s)	284
RsaI	GTAC	3 cut(s)	10, 180, 1504
RsaNI	GTAC	3 cut(s)	9, 179, 1503
RseI	CAYNNNNRTG	6 cut(s)	858, 1504, 1542, 1740, 1777, 1923
SalI	GTCGAC	1 cut(s)	1037
SaqAI	TTAA	7 cut(s)	660, 705, 714, 774, 786, 1157, 1590
Sau3AI	GATC	8 cut(s)	225, 250, 291, 448, 471, 576, 990, 2242
Sau96I	GGNCC	2 cut(s)	559, 2227
SchI	GAGTC	5 cut(s)	27, 818, 1571, 2327, 2333
ScrFI	CCNGG	4 cut(s)	469, 496, 751, 2231
SduI	GDGCHC	2 cut(s)	588, 1151
SfaNI	GCATC	3 cut(s)	790, 1223, 1269
SfcI	CTRYAG	2 cut(s)	837, 1711
SfoI	GGCGCC	1 cut(s)	1379
SfuI	TTCGAA	1 cut(s)	724
SinI	GGWCC	1 cut(s)	2227
SmiMI	CAYNNNNRTG	6 cut(s)	858, 1504, 1542, 1740, 1777, 1923
SseBI	AGGCCT	1 cut(s)	572
SspDI	GGCGCC	1 cut(s)	1377
SspI	AATATT	3 cut(s)	1531, 1829, 2057
SspMI	CTAG	1 cut(s)	1365
StuI	AGGCCT	1 cut(s)	572
StyD4I	CCNGG	4 cut(s)	467, 494, 749, 2229
StyI	CCWWGG	3 cut(s)	276, 1142, 1277
TaaI	ACNGT	4 cut(s)	1019, 1043, 1602, 1666
TaiI	ACGT	1 cut(s)	1093
TatI	WGTACW	1 cut(s)	1502
TauI	GCSGC	7 cut(s)	27, 158, 173, 238, 333, 374, 377
TfiI	GAWTC	9 cut(s)	265, 618, 842, 1318, 1568, 1574, 1611, 2029, 2209
Tru1I	TTAA	7 cut(s)	660, 705, 714, 774, 786, 1157, 1590
Tru9I	TTAA	7 cut(s)	660, 705, 714, 774, 786, 1157, 1590
TscAI	CASTG	2 cut(s)	595, 746
TseFI	GTSAC	3 cut(s)	1244, 2315, 2330
TseI	GCWGC	5 cut(s)	593, 682, 927, 961, 1395
Tsp45I	GTSAC	3 cut(s)	1244, 2315, 2330
TspGWI	ACGGA	2 cut(s)	311, 369
TspRI	CASTG	2 cut(s)	595, 746
VpaK11BI	GGWCC	1 cut(s)	2227
XapI	RAATTY	3 cut(s)	553, 1052, 1586
XceI	RCATGY	7 cut(s)	968, 1073, 1187, 1299, 1503, 1509, 1776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	1038
XspI	CTAG	1 cut(s)	1365
Zsp2I	ATGCAT	1 cut(s)	1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.