Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

11598151 .. 11600873

Gene Structure 2723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1126100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGCTCGAGGACGTCGAGCGATTCGCTCAGGAGCTCGAGGACCACGAACGCACGGTATTGGAAATGATGAAGGCGAAAGAGGATCTCAGCCGTCGGATTCACGATCAGAAGTTCGCCGTCGAACTCCGCGACGTGCCCGAGGACTATTGGGCCCAGCACGGCGAGTATTACCAGCGTCCGTACTGTACGGACGGCGCGTCATCATCAAAACCTGCGGTGGTGGTGGAGACTGAGAATTTGAGGCTGTATTGCAAGGGTTTGGTGAGCGAGGAGATGGTTAGGGATGTCAAGTCCGTGGTGGCCGGGGTGGGTGTCGCGATCTGCGACCCGATGGACAATCTAATATTCGAGGCGAGGAAGAATCTGGAGGCGGTGGTTGACGGCGTCATGCTGAGCAATGAGGCGGCGGAGCTCGAGGCCATCATTGAAGGGCTTAACAATGCTCTCACTCTTGACTTGGAAGCTGTGACCTTTTTCTGTGATGACTACATGATTTACCGATATGTCACAAACAGAGTGCAACCTGGAAATAGCAAGGTTGCAACGTTAGTTAATCAAGTGGCTCTTCTACAGAAAAAATTTGAATATTGCAGCCCTTCTCTTGTGGCTCGTAGTGACATTAAGTTTGCACTTAAGATTGCAAGGGAGGCTATTGTTTCTCAGATCACCTGGCACGCAGAAACTAGTGAAGGAAAGAGTTTGAAGGAGACTTGTGTAATTTGCTTTGAAGAAATTGATGTTACTGAAATGTTTACAATCGATGGTTGTCTACACAGGTATTGCTTCTCTTGTATGAAACAACATGTGGAAGTAAAGTTTCTGAATGGGATGGTGGCAGGGTGCCCTCATGAAGGCTGTAAAACTGAGGTGAATATTGATAGCTGTGCAAAATTCTTGGCACCTAAACTAGTCGAGGCTATTAGCCAAAGAATCAAGGAATCTGCTATACCTGTTACGGACAAGGTTTATTGCCCAAATCCGAGGTGCTCTGCATTAATGTCTAACAACGAGGTCTTAGAATATACCAAAACTTCTTTTGTCGGTGCTGAGAAATCTGGAGCCAGGAGATGCAAGAAATGTCTTTACTATTTTTGTATCAATTGCAAGGTTCCTTGGCACTTCAATATGAACTGCTATGACTATAAGCTATTAAATCCCAATCCCCGCCCAGAAGATCAATTGCTGAACTCACTGGCTAAGAAGAAACACTGGCGTCAGTGCATCAAGTGCAGCAATATGGTCGAACTCGCAGAAGGTTGTTACCACATAACTTGCAGATGTGGATACGAGTTTTGCTATACTTGTGGTGCTGAATGGAAGAACAAGAAAGCAACGTGTAAATGTAAAATCTGGGATGAGCGTAACATCATACGTGAACAGCCACAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

464

Amino Acids

52.99

Weight (kDa)

6.02

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	97 - 217	5.7e-20	Reverse transcriptase-like
IBR	PF01485	320 - 378	1.7e-10	IBR domain, a half RING-finger domain
IBR	PF01485	393 - 446	5.6e-08	IBR domain, a half RING-finger domain
IBR_1	PF22191	405 - 443	2.8e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	15
Acc36I	ACCTGC	1 cut(s)	220
AccB1I	GGYRCC	2 cut(s)	840, 898
AccI	GTMKAC	1 cut(s)	769
AccII	CGCG	3 cut(s)	129, 197, 317
AciI	CCGC	6 cut(s)	127, 215, 371, 404, 407, 1165
AclI	AACGTT	1 cut(s)	545
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	3 cut(s)	235, 578, 890
AcyI	GRCGYC	3 cut(s)	12, 384, 1213
AfaI	GTAC	2 cut(s)	182, 187
AfiI	CCNNNNNNNGG	1 cut(s)	851
AflII	CTTAAG	1 cut(s)	632
AflIII	ACRYGT	2 cut(s)	802, 1334
AgsI	TTSAA	5 cut(s)	428, 584, 703, 728, 1123
AhdI	GACNNNNNGTC	1 cut(s)	196
AhlI	ACTAGT	2 cut(s)	683, 907
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	3 cut(s)	523, 668, 1061
AluBI	AGCT	5 cut(s)	34, 412, 464, 882, 1147
AluI	AGCT	5 cut(s)	34, 412, 464, 882, 1147
Alw21I	GWGCWC	3 cut(s)	36, 414, 989
Alw26I	GTCTC	2 cut(s)	221, 701
AlwI	GGATC	1 cut(s)	90
Ama87I	CYCGRG	4 cut(s)	5, 35, 137, 413
AoxI	GGCC	3 cut(s)	150, 300, 417
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	591, 1230
ApoI	RAATTY	3 cut(s)	235, 578, 890
ArsI	GACNNNNNNTTYG	4 cut(s)	220, 252, 608, 640
AseI	ATTAAT	1 cut(s)	995
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	40, 150, 151
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	3 cut(s)	274, 658, 880
AvaI	CYCGRG	4 cut(s)	5, 35, 137, 413
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	3 cut(s)	138, 154, 845
BanI	GGYRCC	2 cut(s)	840, 898
BanII	GRGCYC	3 cut(s)	36, 154, 414
Bbv12I	GWGCWC	3 cut(s)	36, 414, 989
BbvI	GCAGC	2 cut(s)	603, 1242
BccI	CCATC	5 cut(s)	268, 325, 428, 755, 823
BceAI	ACGGC	5 cut(s)	75, 101, 175, 208, 397
BcgI	CGANNNNNNTGC	2 cut(s)	1222, 1256
BciT130I	CCWGG	3 cut(s)	525, 670, 1063
BciVI	GTATCC	1 cut(s)	1277
BcnI	CCSGG	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	221, 701
BcuI	ACTAGT	2 cut(s)	683, 907
BfaI	CTAG	2 cut(s)	684, 908
BfmI	CTRYAG	1 cut(s)	569
BfrI	CTTAAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	220
BfuI	GTATCC	1 cut(s)	1277
BisI	GCNGC	3 cut(s)	405, 592, 1231
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	3 cut(s)	406, 593, 1232
Bme1390I	CCNGG	4 cut(s)	304, 525, 670, 1063
Bme18I	GGWCC	1 cut(s)	40
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmeT110I	CYCGRG	4 cut(s)	5, 35, 137, 413
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	3 cut(s)	40, 150, 151
BmiI	GGNNCC	5 cut(s)	152, 842, 900, 1060, 1110
BmrFI	CCNGG	4 cut(s)	304, 525, 670, 1063
BmsI	GCATC	2 cut(s)	1058, 1230
BpmI	CTGGAG	2 cut(s)	386, 1077
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	304
Bsa29I	ATCGAT	1 cut(s)	759
BsaAI	YACGTR	1 cut(s)	1373
BsaHI	GRCGYC	3 cut(s)	12, 384, 1213
BsaJI	CCNNGG	5 cut(s)	138, 294, 303, 980, 1112
Bsc4I	CCNNNNNNNGG	1 cut(s)	851
Bse1I	ACTGG	2 cut(s)	1197, 1214
Bse3DI	GCAATG	1 cut(s)	403
BseBI	CCWGG	3 cut(s)	525, 670, 1063
BseCI	ATCGAT	1 cut(s)	759
BseDI	CCNNGG	5 cut(s)	138, 294, 303, 980, 1112
BseGI	GGATG	3 cut(s)	289, 834, 1360
BseLI	CCNNNNNNNGG	1 cut(s)	851
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	7 cut(s)	41, 100, 222, 383, 674, 855, 1038
BseNI	ACTGG	2 cut(s)	1197, 1214
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	3 cut(s)	138, 154, 845
BseXI	GCAGC	2 cut(s)	603, 1242
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	1249
Bsh1236I	CGCG	3 cut(s)	129, 197, 317
BshFI	GGCC	3 cut(s)	152, 302, 419
BshNI	GGYRCC	2 cut(s)	840, 898
BshVI	ATCGAT	1 cut(s)	759
BsiHKAI	GWGCWC	3 cut(s)	36, 414, 989
BsiHKCI	CYCGRG	4 cut(s)	5, 35, 137, 413
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	851
BsmAI	GTCTC	2 cut(s)	221, 701
BsnI	GGCC	3 cut(s)	152, 302, 419
BsoBI	CYCGRG	4 cut(s)	5, 35, 137, 413
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	6 cut(s)	36, 138, 154, 414, 845, 989
Bsp143I	GATC	5 cut(s)	82, 103, 318, 663, 1174
Bsp1720I	GCTNAGC	1 cut(s)	392
Bsp68I	TCGCGA	1 cut(s)	317
BspACI	CCGC	6 cut(s)	127, 215, 371, 404, 407, 1165
BspANI	GGCC	3 cut(s)	152, 302, 419
BspCNI	CTCAG	7 cut(s)	40, 99, 223, 384, 673, 856, 1039
BspDI	ATCGAT	1 cut(s)	759
BspFNI	CGCG	3 cut(s)	129, 197, 317
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	5 cut(s)	152, 842, 900, 1060, 1110
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	90
BspQI	GCTCTTC	1 cut(s)	570
BspT107I	GGYRCC	2 cut(s)	840, 898
BspTI	CTTAAG	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	1197, 1214
BssECI	CCNNGG	5 cut(s)	138, 294, 303, 980, 1112
BssMI	GATC	5 cut(s)	82, 103, 318, 663, 1174
BssNI	GRCGYC	3 cut(s)	12, 384, 1213
BssT1I	CCWWGG	1 cut(s)	1112
Bst2UI	CCWGG	3 cut(s)	525, 670, 1063
Bst4CI	ACNGT	2 cut(s)	55, 185
Bst6I	CTCTTC	1 cut(s)	570
BstACI	GRCGYC	3 cut(s)	12, 384, 1213
BstAFI	CTTAAG	1 cut(s)	632
BstAPI	GCANNNNNTGC	1 cut(s)	1227
BstBAI	YACGTR	1 cut(s)	1373
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	9 cut(s)	27, 86, 231, 392, 660, 864, 1015, 1047, 1197
BstDSI	CCRYGG	1 cut(s)	294
BstENI	CCTNNNNNAGG	1 cut(s)	849
BstF5I	GGATG	3 cut(s)	289, 834, 1360
BstFNI	CGCG	3 cut(s)	129, 197, 317
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	5 cut(s)	85, 106, 321, 666, 1177
BstMAI	GTCTC	2 cut(s)	221, 701
BstMBI	GATC	5 cut(s)	82, 103, 318, 663, 1174
BstMWI	GCNNNNNNNGC	2 cut(s)	647, 1227
BstNI	CCWGG	3 cut(s)	525, 670, 1063
BstNSI	RCATGY	1 cut(s)	806
BstSCI	CCNGG	4 cut(s)	302, 523, 668, 1061
BstSFI	CTRYAG	1 cut(s)	569
BstSLI	GKGCMC	3 cut(s)	138, 154, 845
BstUI	CGCG	3 cut(s)	129, 197, 317
BstV1I	GCAGC	2 cut(s)	603, 1242
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
Bsu15I	ATCGAT	1 cut(s)	759
BsuI	GTATCC	1 cut(s)	1277
BsuRI	GGCC	3 cut(s)	152, 302, 419
BsuTUI	ATCGAT	1 cut(s)	759
BtgI	CCRYGG	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	289, 834, 1360
BtsIMutI	CAGTG	3 cut(s)	1190, 1207, 1223
BtuMI	TCGCGA	1 cut(s)	317
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	675
CciI	TCATGA	1 cut(s)	847
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	3 cut(s)	40, 150, 151
ClaI	ATCGAT	1 cut(s)	759
CseI	GACGC	4 cut(s)	164, 186, 373, 1202
Csp6I	GTAC	2 cut(s)	181, 186
CspCI	CAANNNNNGTGG	2 cut(s)	1253, 1288
CviAII	CATG	4 cut(s)	388, 490, 803, 848
CviQI	GTAC	2 cut(s)	181, 186
DdeI	CTNAG	9 cut(s)	27, 86, 231, 392, 660, 864, 1015, 1047, 1197
DpnI	GATC	5 cut(s)	84, 105, 320, 665, 1176
DpnII	GATC	5 cut(s)	82, 103, 318, 663, 1174
DriI	GACNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	570
Eam1105I	GACNNNNNGTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	570
EciI	GGCGGA	1 cut(s)	422
Ecl136II	GAGCTC	2 cut(s)	34, 412
Eco130I	CCWWGG	1 cut(s)	1112
Eco24I	GRGCYC	3 cut(s)	36, 154, 414
Eco47I	GGWCC	1 cut(s)	40
Eco53kI	GAGCTC	2 cut(s)	34, 412
Eco88I	CYCGRG	4 cut(s)	5, 35, 137, 413
EcoICRI	GAGCTC	2 cut(s)	34, 412
EcoNI	CCTNNNNNAGG	1 cut(s)	849
EcoRII	CCWGG	3 cut(s)	523, 668, 1061
EcoT14I	CCWWGG	1 cut(s)	1112
EcoT38I	GRGCYC	3 cut(s)	36, 154, 414
ErhI	CCWWGG	1 cut(s)	1112
FaeI	CATG	4 cut(s)	391, 493, 806, 851
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FatI	CATG	4 cut(s)	387, 489, 802, 847
FauI	CCCGC	1 cut(s)	1172
FblI	GTMKAC	1 cut(s)	769
Fnu4HI	GCNGC	3 cut(s)	405, 592, 1231
FokI	GGATG	3 cut(s)	296, 841, 1367
FriOI	GRGCYC	3 cut(s)	36, 154, 414
Fsp4HI	GCNGC	3 cut(s)	405, 592, 1231
FspBI	CTAG	2 cut(s)	684, 908
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	3 cut(s)	405, 592, 1231
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	2 cut(s)	386, 1077
HaeIII	GGCC	3 cut(s)	152, 302, 419
HapII	CCGG	1 cut(s)	303
HgaI	GACGC	4 cut(s)	164, 186, 373, 1202
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	3 cut(s)	12, 384, 1213
Hin1II	CATG	4 cut(s)	391, 493, 806, 851
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	5 cut(s)	21, 97, 361, 930, 938
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	3 cut(s)	274, 658, 880
Hpy166II	GTNNAC	4 cut(s)	379, 753, 770, 1376
Hpy188I	TCNGA	5 cut(s)	96, 108, 663, 822, 981
Hpy188III	TCNNGA	7 cut(s)	29, 101, 316, 365, 452, 848, 1056
Hpy8I	GTNNAC	4 cut(s)	379, 753, 770, 1376
Hpy99I	CGWCG	4 cut(s)	17, 96, 122, 134
HpyAV	CCTTC	7 cut(s)	64, 422, 606, 683, 697, 845, 1247
HpyCH4III	ACNGT	2 cut(s)	55, 185
HpyCH4IV	ACGT	5 cut(s)	12, 132, 545, 1334, 1372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	647, 1227
HpyF3I	CTNAG	9 cut(s)	27, 86, 231, 392, 660, 864, 1015, 1047, 1197
HpySE526I	ACGT	5 cut(s)	12, 132, 545, 1334, 1372
Hsp92I	GRCGYC	3 cut(s)	12, 384, 1213
Hsp92II	CATG	4 cut(s)	391, 493, 806, 851
HspAI	GCGC	1 cut(s)	195
Kzo9I	GATC	5 cut(s)	82, 103, 318, 663, 1174
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	3 cut(s)	31, 409, 1058
Lsp1109I	GCAGC	2 cut(s)	603, 1242
LweI	GCATC	2 cut(s)	1058, 1230
MaeI	CTAG	2 cut(s)	684, 908
MaeII	ACGT	5 cut(s)	12, 132, 545, 1334, 1372
MaeIII	GTNAC	7 cut(s)	466, 505, 614, 739, 952, 1259, 1361
MalI	GATC	5 cut(s)	84, 105, 320, 665, 1176
MboI	GATC	5 cut(s)	82, 103, 318, 663, 1174
MboII	GAAGA	6 cut(s)	370, 557, 740, 1184, 1213, 1330
MfeI	CAATTG	2 cut(s)	1099, 1178
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	6 cut(s)	36, 138, 154, 414, 845, 989
MluCI	AATT	7 cut(s)	235, 578, 717, 732, 890, 1099, 1178
MmeI	TCCRAC	1 cut(s)	74
MseI	TTAA	6 cut(s)	435, 552, 621, 633, 995, 1151
MslI	CAYNNNNRTG	1 cut(s)	1387
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	4 cut(s)	304, 525, 670, 1063
MunI	CAATTG	2 cut(s)	1099, 1178
MvaI	CCWGG	3 cut(s)	525, 670, 1063
MvnI	CGCG	3 cut(s)	129, 197, 317
MwoI	GCNNNNNNNGC	2 cut(s)	647, 1227
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	5 cut(s)	82, 103, 318, 663, 1174
NlaIII	CATG	4 cut(s)	391, 493, 806, 851
NlaIV	GGNNCC	5 cut(s)	152, 842, 900, 1060, 1110
NmuCI	GTSAC	3 cut(s)	466, 505, 614
NruI	TCGCGA	1 cut(s)	317
NspI	RCATGY	1 cut(s)	806
PaeR7I	CTCGAG	3 cut(s)	5, 35, 413
PagI	TCATGA	1 cut(s)	847
PciI	ACATGT	1 cut(s)	802
PciSI	GCTCTTC	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	5 cut(s)	12, 42, 126, 194, 321
PfeI	GAWTC	5 cut(s)	21, 97, 361, 930, 938
PflFI	GACNNNGTC	1 cut(s)	383
PkrI	GCNGC	3 cut(s)	406, 593, 1232
Ppu21I	YACGTR	1 cut(s)	1373
PscI	ACATGT	1 cut(s)	802
PshBI	ATTAAT	1 cut(s)	995
Psp124BI	GAGCTC	2 cut(s)	36, 414
Psp1406I	AACGTT	1 cut(s)	545
Psp6I	CCWGG	3 cut(s)	523, 668, 1061
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	3 cut(s)	523, 668, 1061
PspN4I	GGNNCC	5 cut(s)	152, 842, 900, 1060, 1110
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	3 cut(s)	40, 150, 151
PspXI	VCTCGAGB	3 cut(s)	5, 35, 413
PsuI	RGATCY	1 cut(s)	82
PsyI	GACNNNGTC	1 cut(s)	383
RruI	TCGCGA	1 cut(s)	317
RsaI	GTAC	2 cut(s)	182, 187
RsaNI	GTAC	2 cut(s)	181, 186
RseI	CAYNNNNRTG	1 cut(s)	1387
SacI	GAGCTC	2 cut(s)	36, 414
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	6 cut(s)	435, 552, 621, 633, 995, 1151
SatI	GCNGC	3 cut(s)	405, 592, 1231
Sau3AI	GATC	5 cut(s)	82, 103, 318, 663, 1174
Sau96I	GGNCC	3 cut(s)	40, 150, 151
ScrFI	CCNGG	4 cut(s)	304, 525, 670, 1063
SduI	GDGCHC	6 cut(s)	36, 138, 154, 414, 845, 989
SfaNI	GCATC	2 cut(s)	1058, 1230
SfcI	CTRYAG	1 cut(s)	569
Sfr274I	CTCGAG	3 cut(s)	5, 35, 413
SinI	GGWCC	1 cut(s)	40
SlaI	CTCGAG	3 cut(s)	5, 35, 413
SmiMI	CAYNNNNRTG	1 cut(s)	1387
SmlI	CTYRAG	4 cut(s)	5, 35, 413, 632
SmoI	CTYRAG	4 cut(s)	5, 35, 413, 632
SpeI	ACTAGT	2 cut(s)	683, 907
Sse9I	AATT	7 cut(s)	235, 578, 717, 732, 890, 1099, 1178
SsiI	CCGC	6 cut(s)	127, 215, 371, 404, 407, 1165
SspI	AATATT	3 cut(s)	345, 587, 874
SspMI	CTAG	2 cut(s)	684, 908
SstI	GAGCTC	2 cut(s)	36, 414
StyD4I	CCNGG	4 cut(s)	302, 523, 668, 1061
StyI	CCWWGG	1 cut(s)	1112
TaaI	ACNGT	2 cut(s)	55, 185
TaiI	ACGT	5 cut(s)	15, 135, 548, 1337, 1375
TaqI	TCGA	9 cut(s)	6, 15, 36, 120, 348, 414, 759, 912, 1242
TasI	AATT	7 cut(s)	235, 578, 717, 732, 890, 1099, 1178
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	5 cut(s)	21, 97, 361, 930, 938
Tru1I	TTAA	6 cut(s)	435, 552, 621, 633, 995, 1151
Tru9I	TTAA	6 cut(s)	435, 552, 621, 633, 995, 1151
TscAI	CASTG	3 cut(s)	1197, 1214, 1223
TseFI	GTSAC	3 cut(s)	466, 505, 614
TseI	GCWGC	2 cut(s)	591, 1230
Tsp45I	GTSAC	3 cut(s)	466, 505, 614
TspDTI	ATGAA	4 cut(s)	83, 809, 864, 1142
TspGWI	ACGGA	4 cut(s)	168, 203, 283, 971
TspRI	CASTG	3 cut(s)	1197, 1214, 1223
Tth111I	GACNNNGTC	1 cut(s)	383
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	1 cut(s)	40
VspI	ATTAAT	1 cut(s)	995
XagI	CCTNNNNNAGG	1 cut(s)	849
XapI	RAATTY	3 cut(s)	235, 578, 890
XceI	RCATGY	1 cut(s)	806
XhoI	CTCGAG	3 cut(s)	5, 35, 413
XmiI	GTMKAC	1 cut(s)	769
XspI	CTAG	2 cut(s)	684, 908
ZraI	GACGTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.