Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

40481773 .. 40483321

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0334200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCGACAAGCTTCGCAACCGCATCGACCGTCGTAGGCCTCGGAAGCTCGCTCTCGTCCAAGAGGACATGCCTCTCTTCAGACTTTGTGAAGCCTGTTATGGTTAGGAGCCCTCTGAGGCAAGCAAAAGCTTCTGGAGGAAGGTTCACCTGCATGAGCTTCCAGAGTGATTGGCTGAGGAGGGATCTGAATGTGATCGGGTTCGGGTTGATCGGATGGTTGGTGCCATCGAGCGTTCCGGCGATCGACGGCAAGAGTTTGACCGGGCTCTTCTTTGACAGCATTGGAGCCGAGCTCGCTCACTTCCCCACACCTCCAGCTCTCACTTCCCAGTTCTGGTTGTGGTTGATCTGCTGGCACTTGGGGCTTTTCATCACCCTTACTTTTGGGCAGATTGGCTTCAAGGGAAGGACTGACAAGTACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

142

Amino Acids

15.53

Weight (kDa)

9.73

Isoelectric Point (pI)

60.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsaO_TMD	PF22832	54 - 142	3.1e-43	PsaO transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	403
AluBI	AGCT	6 cut(s)	12, 48, 131, 159, 295, 320
AluI	AGCT	6 cut(s)	12, 48, 131, 159, 295, 320
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	139, 367
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	3 cut(s)	113, 270, 297
Bbv12I	GWGCWC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	176
BccI	CCATC	2 cut(s)	210, 235
BceAI	ACGGC	1 cut(s)	265
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BcnI	CCSGG	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	158
BmcAI	AGTACT	1 cut(s)	422
Bme1390I	CCNGG	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	110, 225, 289
BmrFI	CCNGG	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	325
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpmI	CTGGAG	2 cut(s)	156, 300
Bpu10I	CCTNAGC	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	107, 167
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	193
Bsh1285I	CGRYCG	2 cut(s)	30, 246
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	223
BsiEI	CGRYCG	2 cut(s)	30, 246
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	239, 264
BslI	CCNNNNNNNGG	1 cut(s)	336
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	3 cut(s)	113, 270, 297
Bsp143I	GATC	5 cut(s)	184, 195, 210, 243, 348
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	108, 168
BspLI	GGNNCC	3 cut(s)	110, 225, 289
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	192
BspQI	GCTCTTC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	5 cut(s)	184, 195, 210, 243, 348
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	2 cut(s)	82, 275
BstC8I	GCNNGC	4 cut(s)	50, 123, 297, 356
BstDEI	CTNAG	2 cut(s)	116, 176
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	5 cut(s)	187, 198, 213, 246, 351
BstMBI	GATC	5 cut(s)	184, 195, 210, 243, 348
BstMCI	CGRYCG	2 cut(s)	30, 246
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 296, 364
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	221
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	4 cut(s)	50, 123, 297, 356
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	2 cut(s)	69, 154
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	2 cut(s)	116, 176
DpnI	GATC	5 cut(s)	186, 197, 212, 245, 350
DpnII	GATC	5 cut(s)	184, 195, 210, 243, 348
Eam1104I	CTCTTC	2 cut(s)	82, 275
EarI	CTCTTC	2 cut(s)	82, 275
Ecl136II	GAGCTC	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	39
Eco24I	GRGCYC	3 cut(s)	113, 270, 297
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	295
EcoT38I	GRGCYC	3 cut(s)	113, 270, 297
FaeI	CATG	2 cut(s)	72, 157
FaiI	YATR	3 cut(s)	70, 101, 155
FatI	CATG	2 cut(s)	68, 153
FokI	GGATG	1 cut(s)	228
FriOI	GRGCYC	3 cut(s)	113, 270, 297
GsuI	CTGGAG	2 cut(s)	156, 300
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	2 cut(s)	239, 264
Hin1II	CATG	2 cut(s)	72, 157
HindIII	AAGCTT	2 cut(s)	10, 129
HpaII	CCGG	2 cut(s)	239, 264
HphI	GGTGA	2 cut(s)	139, 367
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	5 cut(s)	44, 82, 117, 189, 215
Hpy188III	TCNNGA	2 cut(s)	135, 163
Hpy8I	GTNNAC	1 cut(s)	147
Hpy99I	CGWCG	2 cut(s)	35, 251
HpyAV	CCTTC	2 cut(s)	135, 402
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 296, 364
HpyF3I	CTNAG	2 cut(s)	116, 176
Hsp92II	CATG	2 cut(s)	72, 157
Kzo9I	GATC	5 cut(s)	184, 195, 210, 243, 348
LguI	GCTCTTC	1 cut(s)	275
LmnI	GCTCC	2 cut(s)	108, 287
LweI	GCATC	1 cut(s)	32
MalI	GATC	5 cut(s)	186, 197, 212, 245, 350
MboI	GATC	5 cut(s)	184, 195, 210, 243, 348
MboII	GAAGA	2 cut(s)	69, 262
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	3 cut(s)	113, 270, 297
MnlI	CCTC	9 cut(s)	50, 57, 83, 111, 123, 131, 171, 174, 324
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	2 cut(s)	239, 264
MspR9I	CCNGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	3 cut(s)	45, 296, 364
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	5 cut(s)	184, 195, 210, 243, 348
NlaIII	CATG	2 cut(s)	72, 157
NlaIV	GGNNCC	3 cut(s)	110, 225, 289
NmeAIII	GCCGAG	1 cut(s)	316
NspI	RCATGY	1 cut(s)	72
PaqCI	CACCTGC	1 cut(s)	158
PceI	AGGCCT	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	275
Ple19I	CGATCG	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	297
PspN4I	GGNNCC	3 cut(s)	110, 225, 289
PsuI	RGATCY	1 cut(s)	184
PvuI	CGATCG	1 cut(s)	246
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	297
SapI	GCTCTTC	1 cut(s)	275
Sau3AI	GATC	5 cut(s)	184, 195, 210, 243, 348
ScaI	AGTACT	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	3 cut(s)	113, 270, 297
SetI	ASST	9 cut(s)	14, 50, 133, 146, 152, 161, 297, 316, 322
SfaNI	GCATC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	152
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	297
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	3 cut(s)	26, 230, 246
TatI	WGTACW	1 cut(s)	420
TspDTI	ATGAA	1 cut(s)	361
XceI	RCATGY	1 cut(s)	72
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.