Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

66361338 .. 66364990

Gene Structure 3653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG409300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1944 bp

ATGACCGCCTCCCTCTCTCAACAGCCCTCGTCTTCGCGCCCTCCTCCGCCTCCGCCGCTCATCCACGACGAATACGACGACGTATTGGACCTCGCCGTCGCGCTCATGCTCGAGGACGTCCAGAAATTCGCGCAGGAATACGACGACCACGAGCGGTCCCTCTTCGAAATAAGGCAGGCGAAGGAAGACCTCGACCGCCGGATTCACGATCAGAATTTCGCCGACGAGGTCCGCAACGTCCCGGAGGACTATTGGAGCAAGTACGGCGATTACTACGAGAAGCCGTACTGTGGCGACGGCGCGTCTTCGTCGTCGTCGTCGAAACCGGCGGTGGAGACTGAGTGTTTGAGATTGTATTGCAAGGGTTTGGTTGGTGAAGAGGTGGTTAGGGATTCGAAGGTGGTGGTGGCTGGGGCTGGGGTTGCGATTTGTGACCCTAGAGATAATCTGATATTCGAGGCGAGGAAGAATCTGGAGGCGTTTGATGGTGGTGTGGTGATGAGCAATGAGGCTGTGGAGCTTGAGGCTCTCCTTGAAGGGCTCAATACAGCTCTCACTCTGGAGTTGAAAAATGTCACATTTTTCTGTGATGGCTACATGCTTTACCAATACGTTACAGGCAGAGTGCTTCCTGGGAACAGCAAGGTTGCAACATTAGTCAATCAATTAGGAGTTCTACGAAGAAAATTTGAATATTGCAGCCTTTCTTTTGTGGCACGTAGTGACATTAAGTTTGCATTTCAATTTGCAAGAGAAGCTATAGTTTCTCAAATAACCTGGCCTGCAGAAACTAGCAGTGGCAAATCTTTGAAGGAGACTTGTGTAATTTGTTTTGAGGACACTGATGTTGGTCGAATGTTTTCAATTGATGGTTGTCTGCACAGGTATTGCTTTTCTTGTATGAAACAGCATGTAGAAGTTAAGTTGCTTAATGGGCAGGTGGCACAGTGCCCTCACGAAGGCTGTAATTCTGAGGTCAATATTGACAGTTGCGTACAATTCCTGGCACCTCAACTAGTTGAGGTTATGAGCCAAAGAATCAAGGAATCTTCTATTCCTGTCACAGAAAAAGTTTATTGCCCAAAACCCAGGTGTTCTGCATTGATGTCCAAAAAGGAGGTCTTGCAATATACAAGCAGCTTTTATGCGGGTGCTGAACAATCTGGAGCCAGGAGATGCATGAAATGTCATTCCTATTTTTGTATCAATTGCAAGGTCCCATGGCATTCGGACATGACATGCTATGATTACAAAAGATCGCATCCCTATCCCCTTGCAGAAGACCAGTTGCTGAAGTCGTTGGCTACAATGAAACACTGGCGCCAGTGTGTTAAGTGCAAGAATATGGTTGAACTCGCAGAAGGTTGTTACCACATTACTTGCAGATGTGGATATGAGTTCTGCTATACTTGCGGAGCTGAATGGAAGGACAAGAAACCAACATGTTCCTGCCCAATCTGGGATGTGCGCAACATCATTCGCGAACAGCCACAACAAGTCCGGCCCATTATACGTGAGCAACCACGCCAAGTTCCCCAACAACTGCGGCAGCCCATTATGCCACGGCAGGTGCAGCCTATCAGACTTGAACACCAACGACAAGGCCAGCCCATTAGACATGAACAACGACAAAGATTTCAAGTGCAACAGCCCATTATGCCACAACAAGTACAGCATGTCATACATGAACAGCCACGACAAGGACAGCCTGGACGTGAGCCACCTCAACAACTGCAGCCCAATATATATCAGCAGCACCGACGTGGACAGCCTGTTGTACTTGAACAGCCACGACAGGCACAGCCCATTAGACGTGAACAGCCACGACAGGCACAGCCCATTAGACGTGAACAGCCACGACAGGTACGGCAACAACAGGATTATGACTACTATGAACAGCCACGACAGGTACGGCGACAAGATGATTACAACTACTATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

647

Amino Acids

74.91

Weight (kDa)

7.41

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	136 - 253	4.7e-20	Reverse transcriptase-like
IBR	PF01485	356 - 414	1.8e-10	IBR domain, a half RING-finger domain
IBR	PF01485	429 - 482	5.1e-08	IBR domain, a half RING-finger domain
IBR_1	PF22191	441 - 478	3.5e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	928, 1558
AasI	GACNNNNNNGTC	1 cut(s)	95
AatII	GACGTC	1 cut(s)	120
Acc16I	TGCGCA	1 cut(s)	1469
Acc36I	ACCTGC	2 cut(s)	928, 1558
AccB1I	GGYRCC	2 cut(s)	1006, 1320
AccBSI	CCGCTC	2 cut(s)	58, 154
AccII	CGCG	5 cut(s)	37, 101, 131, 302, 1482
AcsI	RAATTY	3 cut(s)	125, 214, 686
AcuI	CTGAAG	1 cut(s)	1313
AcyI	GRCGYC	2 cut(s)	117, 1321
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	7 cut(s)	263, 287, 996, 1671, 1779, 1866, 1911
AfiI	CCNNNNNNNGG	4 cut(s)	290, 959, 1459, 1700
AflIII	ACRYGT	1 cut(s)	1442
AhdI	GACNNNNNGTC	1 cut(s)	301
AhlI	ACTAGT	1 cut(s)	1015
AjiI	CACGTC	4 cut(s)	1715, 1763, 1814, 1847
AjnI	CCWGG	6 cut(s)	631, 776, 1002, 1088, 1169, 1708
AleI	CACNNNNGTG	1 cut(s)	1761
AluBI	AGCT	5 cut(s)	520, 551, 758, 1140, 1418
AluI	AGCT	5 cut(s)	520, 551, 758, 1140, 1418
Alw26I	GTCTC	2 cut(s)	329, 809
AlwNI	CAGNNNCTG	1 cut(s)	1291
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	3 cut(s)	779, 1502, 1603
ApeKI	GCWGC	6 cut(s)	699, 1137, 1549, 1573, 1735, 1753
ApoI	RAATTY	3 cut(s)	125, 214, 686
ArsI	GACNNNNNNTTYG	6 cut(s)	328, 360, 716, 748, 1104, 1136
Asp700I	GAANNNNTTC	1 cut(s)	859
AspLEI	GCGC	6 cut(s)	39, 103, 133, 302, 1323, 1470
AspS9I	GGNCC	5 cut(s)	88, 156, 229, 1216, 1503
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	386, 508
AsuII	TTCGAA	2 cut(s)	165, 395
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	4 cut(s)	88, 156, 229, 1216
BaeGI	GKGCMC	1 cut(s)	953
BanI	GGYRCC	2 cut(s)	1006, 1320
BanII	GRGCYC	1 cut(s)	543
BauI	CACGAG	1 cut(s)	149
BbsI	GAAGAC	4 cut(s)	24, 192, 297, 1287
BbvI	GCAGC	6 cut(s)	711, 1149, 1561, 1585, 1747, 1765
BccI	CCATC	3 cut(s)	479, 584, 863
BceAI	ACGGC	7 cut(s)	80, 268, 280, 313, 1580, 1883, 1928
BciT130I	CCWGG	6 cut(s)	633, 778, 1004, 1090, 1171, 1710
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	329, 809
BcuI	ACTAGT	1 cut(s)	1015
BfaI	CTAG	4 cut(s)	438, 792, 1016, 1942
BfmI	CTRYAG	3 cut(s)	759, 783, 1733
BfoI	RGCGCY	1 cut(s)	1324
BfuAI	ACCTGC	2 cut(s)	928, 1558
BisI	GCNGC	8 cut(s)	56, 700, 1138, 1547, 1550, 1574, 1736, 1754
BlsI	GCNGC	8 cut(s)	57, 701, 1139, 1548, 1551, 1575, 1737, 1755
Bme1390I	CCNGG	7 cut(s)	242, 633, 778, 1004, 1090, 1171, 1710
Bme18I	GGWCC	4 cut(s)	88, 156, 229, 1216
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	110
BmgBI	CACGTC	4 cut(s)	1715, 1763, 1814, 1847
BmgT120I	GGNCC	5 cut(s)	88, 156, 229, 1216, 1503
BmiI	GGNNCC	5 cut(s)	158, 1008, 1168, 1218, 1322
BmrFI	CCNGG	7 cut(s)	242, 633, 778, 1004, 1090, 1171, 1710
BmsI	GCATC	2 cut(s)	1166, 1270
BpiI	GAAGAC	4 cut(s)	24, 192, 297, 1287
BpmI	CTGGAG	3 cut(s)	494, 581, 1185
Bpu14I	TTCGAA	2 cut(s)	165, 395
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	1 cut(s)	242
BsaAI	YACGTR	2 cut(s)	719, 1514
BsaHI	GRCGYC	2 cut(s)	117, 1321
BsaJI	CCNNGG	4 cut(s)	632, 1088, 1220, 1562
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	4 cut(s)	290, 959, 1459, 1700
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	3 cut(s)	1285, 1322, 1324
Bse3DI	GCAATG	1 cut(s)	511
BseBI	CCWGG	6 cut(s)	633, 778, 1004, 1090, 1171, 1710
BseDI	CCNNGG	4 cut(s)	632, 1088, 1220, 1562
BseGI	GGATG	3 cut(s)	60, 1261, 1468
BseLI	CCNNNNNNNGG	4 cut(s)	290, 959, 1459, 1700
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	2 cut(s)	330, 963
BseNI	ACTGG	3 cut(s)	1285, 1322, 1324
BseRI	GAGGAG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	953
BseXI	GCAGC	6 cut(s)	711, 1149, 1561, 1585, 1747, 1765
BseYI	CCCAGC	2 cut(s)	410, 416
BsgI	GTGCAG	2 cut(s)	863, 1592
Bsh1236I	CGCG	5 cut(s)	37, 101, 131, 302, 1482
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	3 cut(s)	781, 1504, 1605
BshNI	GGYRCC	2 cut(s)	1006, 1320
BsiEI	CGRYCG	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	4 cut(s)	199, 242, 326, 1501
BslFI	GGGAC	3 cut(s)	142, 224, 1202
BslI	CCNNNNNNNGG	4 cut(s)	290, 959, 1459, 1700
BsmAI	GTCTC	2 cut(s)	329, 809
BsmFI	GGGAC	3 cut(s)	142, 224, 1202
BsmI	GAATGC	1 cut(s)	1225
BsnI	GGCC	3 cut(s)	781, 1504, 1605
BsoBI	CYCGRG	1 cut(s)	110
Bsp119I	TTCGAA	2 cut(s)	165, 395
Bsp1286I	GDGCHC	2 cut(s)	543, 953
Bsp143I	GATC	2 cut(s)	208, 1256
Bsp19I	CCATGG	1 cut(s)	1220
Bsp68I	TCGCGA	1 cut(s)	1482
BspANI	GGCC	3 cut(s)	781, 1504, 1605
BspCNI	CTCAG	2 cut(s)	331, 964
BspFNI	CGCG	5 cut(s)	37, 101, 131, 302, 1482
BspLI	GGNNCC	5 cut(s)	158, 1008, 1168, 1218, 1322
BspMAI	CTGCAG	2 cut(s)	787, 1737
BspMI	ACCTGC	2 cut(s)	928, 1558
BspT104I	TTCGAA	2 cut(s)	165, 395
BspT107I	GGYRCC	2 cut(s)	1006, 1320
BsrBI	CCGCTC	2 cut(s)	58, 154
BsrDI	GCAATG	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	3 cut(s)	1285, 1322, 1324
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	4 cut(s)	632, 1088, 1220, 1562
BssMI	GATC	2 cut(s)	208, 1256
BssNI	GRCGYC	2 cut(s)	117, 1321
BssSI	CACGAG	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	1220
Bst2BI	CACGAG	1 cut(s)	149
Bst2UI	CCWGG	6 cut(s)	633, 778, 1004, 1090, 1171, 1710
Bst4CI	ACNGT	3 cut(s)	290, 948, 989
Bst6I	CTCTTC	2 cut(s)	167, 372
BstACI	GRCGYC	2 cut(s)	117, 1321
BstBAI	YACGTR	2 cut(s)	719, 1514
BstBI	TTCGAA	2 cut(s)	165, 395
BstC8I	GCNNGC	3 cut(s)	177, 783, 1607
BstDEI	CTNAG	2 cut(s)	339, 972
BstDSI	CCRYGG	2 cut(s)	1220, 1562
BstENI	CCTNNNNNAGG	1 cut(s)	957
BstF5I	GGATG	3 cut(s)	60, 1261, 1468
BstFNI	CGCG	5 cut(s)	37, 101, 131, 302, 1482
BstH2I	RGCGCY	1 cut(s)	1324
BstHHI	GCGC	6 cut(s)	39, 103, 133, 302, 1323, 1470
BstKTI	GATC	2 cut(s)	211, 1259
BstMAI	GTCTC	2 cut(s)	329, 809
BstMBI	GATC	2 cut(s)	208, 1256
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	9 cut(s)	55, 264, 422, 755, 934, 1410, 1558, 1573, 1657
BstNI	CCWGG	6 cut(s)	633, 778, 1004, 1090, 1171, 1710
BstNSI	RCATGY	5 cut(s)	601, 914, 1242, 1446, 1679
BstSCI	CCNGG	7 cut(s)	240, 631, 776, 1002, 1088, 1169, 1708
BstSFI	CTRYAG	3 cut(s)	759, 783, 1733
BstSLI	GKGCMC	1 cut(s)	953
BstUI	CGCG	5 cut(s)	37, 101, 131, 302, 1482
BstV1I	GCAGC	6 cut(s)	711, 1149, 1561, 1585, 1747, 1765
BstV2I	GAAGAC	4 cut(s)	24, 192, 297, 1287
BsuRI	GGCC	3 cut(s)	781, 1504, 1605
BtgI	CCRYGG	2 cut(s)	1220, 1562
BtrI	CACGTC	4 cut(s)	1715, 1763, 1814, 1847
BtsCI	GGATG	3 cut(s)	60, 1261, 1468
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	5 cut(s)	802, 840, 953, 1315, 1331
BtuMI	TCGCGA	1 cut(s)	1482
BveI	ACCTGC	2 cut(s)	928, 1558
Cac8I	GCNNGC	3 cut(s)	177, 783, 1607
CaiI	CAGNNNCTG	1 cut(s)	1291
CfoI	GCGC	6 cut(s)	39, 103, 133, 302, 1323, 1470
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	5 cut(s)	88, 156, 229, 1216, 1503
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	7 cut(s)	262, 286, 995, 1670, 1778, 1865, 1910
CspCI	CAANNNNNGTGG	2 cut(s)	1361, 1396
CviQI	GTAC	7 cut(s)	262, 286, 995, 1670, 1778, 1865, 1910
DdeI	CTNAG	2 cut(s)	339, 972
DinI	GGCGCC	1 cut(s)	1322
DpnI	GATC	2 cut(s)	210, 1258
DpnII	GATC	2 cut(s)	208, 1256
DraIII	CACNNNGTG	1 cut(s)	722
DrdI	GACNNNNNNGTC	1 cut(s)	95
DriI	GACNNNNNGTC	1 cut(s)	301
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	167, 372
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	2 cut(s)	167, 372
EciI	GGCGGA	2 cut(s)	36, 42
Eco130I	CCWWGG	1 cut(s)	1220
Eco24I	GRGCYC	1 cut(s)	543
Eco47I	GGWCC	4 cut(s)	88, 156, 229, 1216
Eco57I	CTGAAG	1 cut(s)	1313
Eco88I	CYCGRG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	1216
EcoRII	CCWGG	6 cut(s)	631, 776, 1002, 1088, 1169, 1708
EcoT14I	CCWWGG	1 cut(s)	1220
EcoT22I	ATGCAT	1 cut(s)	1181
EcoT38I	GRGCYC	1 cut(s)	543
EgeI	GGCGCC	1 cut(s)	1322
EheI	GGCGCC	1 cut(s)	1322
ErhI	CCWWGG	1 cut(s)	1220
FalI	AAGNNNNNCTT	2 cut(s)	1106, 1138
FaqI	GGGAC	3 cut(s)	142, 224, 1202
FauI	CCCGC	1 cut(s)	1141
Fnu4HI	GCNGC	8 cut(s)	56, 700, 1138, 1547, 1550, 1574, 1736, 1754
FokI	GGATG	3 cut(s)	47, 1248, 1475
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	8 cut(s)	56, 700, 1138, 1547, 1550, 1574, 1736, 1754
FspBI	CTAG	4 cut(s)	438, 792, 1016, 1942
FspI	TGCGCA	1 cut(s)	1469
GlaI	GCGC	6 cut(s)	38, 102, 132, 301, 1322, 1469
GluI	GCNGC	8 cut(s)	56, 700, 1138, 1547, 1550, 1574, 1736, 1754
GsaI	CCCAGC	2 cut(s)	414, 420
GsuI	CTGGAG	3 cut(s)	494, 581, 1185
HaeII	RGCGCY	1 cut(s)	1324
HaeIII	GGCC	3 cut(s)	781, 1504, 1605
HapII	CCGG	4 cut(s)	199, 242, 326, 1501
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	6 cut(s)	39, 103, 133, 302, 1323, 1470
Hin1I	GRCGYC	2 cut(s)	117, 1321
Hin6I	GCGC	6 cut(s)	37, 101, 131, 300, 1321, 1468
HinP1I	GCGC	6 cut(s)	37, 101, 131, 300, 1321, 1468
HinfI	GANTC	5 cut(s)	202, 392, 469, 1038, 1046
HpaII	CCGG	4 cut(s)	199, 242, 326, 1501
HphI	GGTGA	2 cut(s)	386, 508
Hpy166II	GTNNAC	3 cut(s)	1766, 1817, 1850
Hpy188I	TCNGA	5 cut(s)	213, 450, 973, 1231, 1583
Hpy188III	TCNNGA	7 cut(s)	121, 206, 473, 560, 956, 1164, 1481
Hpy8I	GTNNAC	3 cut(s)	1766, 1817, 1850
HpyAV	CCTTC	7 cut(s)	175, 391, 530, 805, 953, 1355, 1420
HpyCH4III	ACNGT	3 cut(s)	290, 948, 989
HpyF10VI	GCNNNNNNNGC	9 cut(s)	55, 264, 422, 755, 934, 1410, 1558, 1573, 1657
HpyF3I	CTNAG	2 cut(s)	339, 972
Hsp92I	GRCGYC	2 cut(s)	117, 1321
HspAI	GCGC	6 cut(s)	37, 101, 131, 300, 1321, 1468
KasI	GGCGCC	1 cut(s)	1320
Kzo9I	GATC	2 cut(s)	208, 1256
LmnI	GCTCC	4 cut(s)	255, 517, 1166, 1415
Lsp1109I	GCAGC	6 cut(s)	711, 1149, 1561, 1585, 1747, 1765
LweI	GCATC	2 cut(s)	1166, 1270
MaeI	CTAG	4 cut(s)	438, 792, 1016, 1942
MaeIII	GTNAC	6 cut(s)	431, 574, 613, 722, 1060, 1367
MalI	GATC	2 cut(s)	210, 1258
MbiI	CCGCTC	2 cut(s)	58, 154
MboI	GATC	2 cut(s)	208, 1256
MboII	GAAGA	9 cut(s)	24, 154, 197, 297, 389, 478, 693, 1041, 1292
MfeI	CAATTG	2 cut(s)	864, 1207
MhlI	GDGCHC	2 cut(s)	543, 953
Mly113I	GGCGCC	1 cut(s)	1321
Mph1103I	ATGCAT	1 cut(s)	1181
MroXI	GAANNNNTTC	1 cut(s)	859
MseI	TTAA	4 cut(s)	729, 921, 930, 1332
MslI	CAYNNNNRTG	1 cut(s)	1761
MspI	CCGG	4 cut(s)	199, 242, 326, 1501
MspR9I	CCNGG	7 cut(s)	242, 633, 778, 1004, 1090, 1171, 1710
MunI	CAATTG	2 cut(s)	864, 1207
Mva1269I	GAATGC	1 cut(s)	1225
MvaI	CCWGG	6 cut(s)	633, 778, 1004, 1090, 1171, 1710
MvnI	CGCG	5 cut(s)	37, 101, 131, 302, 1482
MwoI	GCNNNNNNNGC	9 cut(s)	55, 264, 422, 755, 934, 1410, 1558, 1573, 1657
NarI	GGCGCC	1 cut(s)	1321
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	1220
NdeII	GATC	2 cut(s)	208, 1256
NlaIV	GGNNCC	5 cut(s)	158, 1008, 1168, 1218, 1322
NmuCI	GTSAC	4 cut(s)	431, 574, 722, 1060
NruI	TCGCGA	1 cut(s)	1482
NsbI	TGCGCA	1 cut(s)	1469
NsiI	ATGCAT	1 cut(s)	1181
NspI	RCATGY	5 cut(s)	601, 914, 1242, 1446, 1679
NspV	TTCGAA	2 cut(s)	165, 395
OliI	CACNNNNGTG	1 cut(s)	1761
PaeR7I	CTCGAG	1 cut(s)	110
PaqCI	CACCTGC	2 cut(s)	928, 1558
PciI	ACATGT	1 cut(s)	1442
PcsI	WCGNNNNNNNCGW	5 cut(s)	72, 75, 147, 314, 317
PctI	GAATGC	1 cut(s)	1225
PdmI	GAANNNNTTC	1 cut(s)	859
PfeI	GAWTC	5 cut(s)	202, 392, 469, 1038, 1046
PflFI	GACNNNGTC	1 cut(s)	227
PfoI	TCCNGGA	1 cut(s)	240
PkrI	GCNGC	8 cut(s)	57, 701, 1139, 1548, 1551, 1575, 1737, 1755
PluTI	GGCGCC	1 cut(s)	1324
Ppu21I	YACGTR	2 cut(s)	719, 1514
PpuMI	RGGWCCY	1 cut(s)	1216
PscI	ACATGT	1 cut(s)	1442
Psp5II	RGGWCCY	1 cut(s)	1216
Psp6I	CCWGG	6 cut(s)	631, 776, 1002, 1088, 1169, 1708
PspFI	CCCAGC	2 cut(s)	410, 416
PspGI	CCWGG	6 cut(s)	631, 776, 1002, 1088, 1169, 1708
PspN4I	GGNNCC	5 cut(s)	158, 1008, 1168, 1218, 1322
PspPI	GGNCC	5 cut(s)	88, 156, 229, 1216, 1503
PspPPI	RGGWCCY	1 cut(s)	1216
PspXI	VCTCGAGB	1 cut(s)	110
PstI	CTGCAG	2 cut(s)	787, 1737
PstNI	CAGNNNCTG	1 cut(s)	1291
PsyI	GACNNNGTC	1 cut(s)	227
RruI	TCGCGA	1 cut(s)	1482
RsaI	GTAC	7 cut(s)	263, 287, 996, 1671, 1779, 1866, 1911
RsaNI	GTAC	7 cut(s)	262, 286, 995, 1670, 1778, 1865, 1910
RseI	CAYNNNNRTG	1 cut(s)	1761
SaqAI	TTAA	4 cut(s)	729, 921, 930, 1332
SatI	GCNGC	8 cut(s)	56, 700, 1138, 1547, 1550, 1574, 1736, 1754
Sau3AI	GATC	2 cut(s)	208, 1256
Sau96I	GGNCC	5 cut(s)	88, 156, 229, 1216, 1503
ScrFI	CCNGG	7 cut(s)	242, 633, 778, 1004, 1090, 1171, 1710
SduI	GDGCHC	2 cut(s)	543, 953
SfaNI	GCATC	2 cut(s)	1166, 1270
SfcI	CTRYAG	3 cut(s)	759, 783, 1733
SfoI	GGCGCC	1 cut(s)	1322
Sfr274I	CTCGAG	1 cut(s)	110
SfuI	TTCGAA	2 cut(s)	165, 395
SinI	GGWCC	4 cut(s)	88, 156, 229, 1216
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	1761
SmlI	CTYRAG	2 cut(s)	110, 521
SmoI	CTYRAG	2 cut(s)	110, 521
SpeI	ACTAGT	1 cut(s)	1015
SspDI	GGCGCC	1 cut(s)	1320
SspI	AATATT	2 cut(s)	695, 982
SspMI	CTAG	4 cut(s)	438, 792, 1016, 1942
StyD4I	CCNGG	7 cut(s)	240, 631, 776, 1002, 1088, 1169, 1708
StyI	CCWWGG	1 cut(s)	1220
TaaI	ACNGT	3 cut(s)	290, 948, 989
TaqI	TCGA	7 cut(s)	111, 165, 192, 320, 395, 456, 853
TatI	WGTACW	2 cut(s)	1669, 1777
TauI	GCSGC	2 cut(s)	58, 1549
TfiI	GAWTC	5 cut(s)	202, 392, 469, 1038, 1046
Tru1I	TTAA	4 cut(s)	729, 921, 930, 1332
Tru9I	TTAA	4 cut(s)	729, 921, 930, 1332
TscAI	CASTG	5 cut(s)	802, 847, 953, 1322, 1331
TseFI	GTSAC	4 cut(s)	431, 574, 722, 1060
TseI	GCWGC	6 cut(s)	699, 1137, 1549, 1573, 1735, 1753
Tsp45I	GTSAC	4 cut(s)	431, 574, 722, 1060
TspDTI	ATGAA	6 cut(s)	917, 1196, 1325, 1635, 1701, 1908
TspRI	CASTG	5 cut(s)	802, 847, 953, 1322, 1331
Tth111I	GACNNNGTC	1 cut(s)	227
VpaK11BI	GGWCC	4 cut(s)	88, 156, 229, 1216
XagI	CCTNNNNNAGG	1 cut(s)	957
XapI	RAATTY	3 cut(s)	125, 214, 686
XceI	RCATGY	5 cut(s)	601, 914, 1242, 1446, 1679
XhoI	CTCGAG	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	859
XspI	CTAG	4 cut(s)	438, 792, 1016, 1942
ZraI	GACGTC	1 cut(s)	118
Zsp2I	ATGCAT	1 cut(s)	1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.