Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

24283066 .. 24287420

Gene Structure 4355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2028 bp

ATGGCCACCCCTGCGTACCGAGACGACCTCCACACCATTCTCTCCGAGCAACGCCGAGAGCTCATGGCCGCCAAAACCCTTGACTCCGACCTCGACATCGCCTTCAGTCTCCAAATGCAGGAGGCCATGACCGCCTCCCTCTCTCAACAGCCCTCGTCTTCGCTCCCTCCTCCGCCTCCTCCGCCGCCGCCCATCCACGACGAATACGACGACGTATTGGACCTCGCCGTCGCGCTCATGCTCGAGGACGTCCAGAAATTCGCGCAGGAATACGACGACCACGAGCGGTCCCTCTTCGAAATAAGGAAGGCGAAGGAAGACCTCGACCGCCGGATTCACGATCAGAATTTCGCCGACGAGGTCCGCAACGTCCCGGAGGACTATTGGAGCAAGTACGGCGATTACTACGAGAAGCCGTACGGTGGCGACGGCGCGTCGTCGTCGTCGTCGAAACCGGCGGTGGAGACTGAGTGTTTGAGATTATATTGCAAGGGTTTGGTTGGCGAAGAGGTGGTTAGGGATTCGAAGGTGGTGGTGGCTGGGGCTGGGGTTGCGATCTGTGACCCTAGAGATAATCTGATATTCGAGGCGAGGAAGAATCTGGAGGCGTTTGATGGTGGTGTGGTGATGAGCAATGAGGCTGTGGAGCTTGAGGCTCTCATTGAAGGGCTCAATACAGCTCTCACTTTGGACTTGAAAAATGTCACATTTTTCTGTGATGGCTACATGCTTTACCAATATGTTACAGGCAGAGTGCTTCCTGGGAACAGCAAGATTGCAACATTAGTCAATCAATTAGGAGTTCTACGAAGAAAATTTGAATATTGCAGCCCTTCTTTTGTGGCACGTAGTGACATTAAGTTTGCATTTCAATTTGCAAGAGAAGCTATAGTTTCTCAAATAACCTGGCCTGCAGAAACTAGCAGTGGCAAATCTTTGAAGGAGACTTGTGTAATTTGTTTTGAGGACACTGATGTTGGTCGAATGTTTTCAATTGATGGTTGTCTGCACAGGTATTGCTTTTCTTGTATGAAACAGCATGTAGAAGTTAAGTTGCTTAATGGGCAGGTGGCACAGTGCCCTCACGAAGGCTGTAATTCTGAGATCAATATTGACAGTTGCGTACAATTCCTGGCACCTCAACTAGTTGAAGTTATGAGCCAAAGAATCAAGGAATCTTCTATTCCTGTCACAGAAAAAGTTTATTGCCCAAAACCCAGGTGTTCTGCATTAATGTCCAAAAAGGAGGTCTTGCAATATACAAGCAGCTTTTATGCGGGTGCTGAACAATCTGGAGCCAGGAGATGCATGAAATGTCATTCCTATTTTTGTATCAATTGCAAGGTCCCATGGCATTCGGACATGACATGCTATGATTACAAAAGATCGCATCCCTATCCCCTTGCAGAAGACCAGTTGCTGAAGTCGTTGGCTACAATGAAACACTGGCGCCAGTGTGTTAAGTGCAAGAATATGGTTGAACTCGCAGAAGGTTGTTACCACATTACCTGCAGATGTGGATATGAGTTCTGCTATACTTGCGGAGCTGAATGGAAGGACAAGAAACCAACATGTTCCTGCCCAATCTGGGATGTGCGCAACATCATACGCGAACAGCCACGACAAGTCCGGCCCATTATACGTGAGCAACCACGCCAAGTTCCCCAACAACTGCGGCAGCCCATTATGCCACAGCAGGTGCAGCCTATCAGACTTGAACACCAACGACAAGGCCAGCCCATTAGACATGAACAACCACAAAGATTTCAAGTGCAGCAGCCCATTGTGCCACAACAAGTACAGCATGTCATACATGAACAGCCACGACAAGGACAACCTGGACGTGAGCCACCTCAACAACTGCAGCCCAATATGTATCAGCAGCACCGATGTGGACAGCCTGTTGTACATGAACAGCCACGACAGGCACAGCCCATTAGACGTGAACAGCCCCGACAGGCACAGCCCATTAGACGTGAACAGCCACGACAGGTACGGCGACAAGATGATTACAACTACTATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

675

Amino Acids

77.59

Weight (kDa)

6.54

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	179 - 296	4e-19	Reverse transcriptase-like
IBR	PF01485	399 - 457	1.9e-10	IBR domain, a half RING-finger domain
IBR	PF01485	472 - 525	5.3e-08	IBR domain, a half RING-finger domain
IBR_1	PF22191	484 - 521	3.7e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1057, 1687
AasI	GACNNNNNNGTC	1 cut(s)	227
AatII	GACGTC	1 cut(s)	252
Acc16I	TGCGCA	1 cut(s)	1598
Acc36I	ACCTGC	3 cut(s)	1057, 1517, 1687
AccB1I	GGYRCC	2 cut(s)	1135, 1449
AccBSI	CCGCTC	1 cut(s)	286
AccII	CGCG	4 cut(s)	233, 263, 434, 1611
AcoI	YGGCCR	2 cut(s)	3, 66
AcsI	RAATTY	3 cut(s)	257, 346, 815
AcuI	CTGAAG	2 cut(s)	88, 1442
AcyI	GRCGYC	2 cut(s)	249, 1450
AdeI	CACNNNGTG	1 cut(s)	851
AfaI	GTAC	7 cut(s)	17, 395, 419, 1125, 1800, 1908, 1995
AfiI	CCNNNNNNNGG	5 cut(s)	118, 422, 1088, 1588, 1829
AflIII	ACRYGT	1 cut(s)	1571
AhdI	GACNNNNNGTC	1 cut(s)	433
AhlI	ACTAGT	1 cut(s)	1144
AjiI	CACGTC	3 cut(s)	1844, 1943, 1976
AjnI	CCWGG	6 cut(s)	760, 905, 1131, 1217, 1298, 1837
AleI	CACNNNNGTG	1 cut(s)	1890
AluBI	AGCT	6 cut(s)	61, 649, 680, 887, 1269, 1547
AluI	AGCT	6 cut(s)	61, 649, 680, 887, 1269, 1547
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	4 cut(s)	15, 113, 458, 938
AlwNI	CAGNNNCTG	1 cut(s)	1420
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	6 cut(s)	3, 66, 123, 908, 1631, 1732
ApeKI	GCWGC	8 cut(s)	828, 1266, 1678, 1702, 1774, 1777, 1864, 1882
ApoI	RAATTY	3 cut(s)	257, 346, 815
ArsI	GACNNNNNNTTYG	6 cut(s)	457, 489, 845, 877, 1233, 1265
AseI	ATTAAT	1 cut(s)	1232
Asp700I	GAANNNNTTC	1 cut(s)	988
AspLEI	GCGC	5 cut(s)	235, 265, 434, 1452, 1599
AspS9I	GGNCC	5 cut(s)	220, 288, 361, 1345, 1632
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	637
AsuII	TTCGAA	2 cut(s)	297, 524
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	4 cut(s)	220, 288, 361, 1345
BaeGI	GKGCMC	1 cut(s)	1082
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	1135, 1449
BanII	GRGCYC	2 cut(s)	63, 672
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	3 cut(s)	150, 324, 1416
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	8 cut(s)	840, 1278, 1690, 1714, 1786, 1789, 1876, 1894
BccI	CCATC	4 cut(s)	200, 608, 713, 992
BceAI	ACGGC	5 cut(s)	212, 400, 412, 445, 2012
BciT130I	CCWGG	6 cut(s)	762, 907, 1133, 1219, 1300, 1839
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	4 cut(s)	15, 113, 458, 938
BcuI	ACTAGT	1 cut(s)	1144
BfaI	CTAG	4 cut(s)	567, 921, 1145, 2026
BfmI	CTRYAG	4 cut(s)	888, 912, 1510, 1862
BfoI	RGCGCY	1 cut(s)	1453
BfuAI	ACCTGC	3 cut(s)	1057, 1517, 1687
Bme1390I	CCNGG	7 cut(s)	374, 762, 907, 1133, 1219, 1300, 1839
Bme18I	GGWCC	4 cut(s)	220, 288, 361, 1345
BmeRI	GACNNNNNGTC	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	242
BmgBI	CACGTC	3 cut(s)	1844, 1943, 1976
BmgT120I	GGNCC	5 cut(s)	220, 288, 361, 1345, 1632
BmiI	GGNNCC	5 cut(s)	290, 1137, 1297, 1347, 1451
BmrFI	CCNGG	7 cut(s)	374, 762, 907, 1133, 1219, 1300, 1839
BmsI	GCATC	2 cut(s)	1295, 1399
BpiI	GAAGAC	3 cut(s)	150, 324, 1416
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpmI	CTGGAG	2 cut(s)	623, 1314
Bpu14I	TTCGAA	2 cut(s)	297, 524
BpuEI	CTTGAG	1 cut(s)	671
BpuMI	CCSGG	1 cut(s)	374
BsaAI	YACGTR	2 cut(s)	848, 1643
BsaHI	GRCGYC	2 cut(s)	249, 1450
BsaJI	CCNNGG	3 cut(s)	761, 1217, 1349
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 422, 1088, 1588, 1829
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	3 cut(s)	1414, 1451, 1453
Bse3DI	GCAATG	1 cut(s)	640
BseBI	CCWGG	6 cut(s)	762, 907, 1133, 1219, 1300, 1839
BseDI	CCNNGG	3 cut(s)	761, 1217, 1349
BseGI	GGATG	3 cut(s)	192, 1390, 1597
BseLI	CCNNNNNNNGG	5 cut(s)	118, 422, 1088, 1588, 1829
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	2 cut(s)	459, 1092
BseNI	ACTGG	3 cut(s)	1414, 1451, 1453
BseRI	GAGGAG	2 cut(s)	159, 168
BseSI	GKGCMC	1 cut(s)	1082
BseXI	GCAGC	8 cut(s)	840, 1278, 1690, 1714, 1786, 1789, 1876, 1894
BseYI	CCCAGC	2 cut(s)	539, 545
BsgI	GTGCAG	3 cut(s)	992, 1721, 1793
Bsh1236I	CGCG	4 cut(s)	233, 263, 434, 1611
Bsh1285I	CGRYCG	1 cut(s)	328
BshFI	GGCC	6 cut(s)	5, 68, 125, 910, 1633, 1734
BshNI	GGYRCC	2 cut(s)	1135, 1449
BsiEI	CGRYCG	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	4 cut(s)	331, 374, 455, 1630
BsiWI	CGTACG	1 cut(s)	417
BslFI	GGGAC	3 cut(s)	274, 356, 1331
BslI	CCNNNNNNNGG	5 cut(s)	118, 422, 1088, 1588, 1829
BsmAI	GTCTC	4 cut(s)	15, 113, 458, 938
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	3 cut(s)	274, 356, 1331
BsmI	GAATGC	1 cut(s)	1354
BsnI	GGCC	6 cut(s)	5, 68, 125, 910, 1633, 1734
BsoBI	CYCGRG	1 cut(s)	242
Bsp119I	TTCGAA	2 cut(s)	297, 524
Bsp1286I	GDGCHC	3 cut(s)	63, 672, 1082
Bsp1407I	TGTACA	1 cut(s)	1906
Bsp143I	GATC	4 cut(s)	340, 555, 1104, 1385
Bsp19I	CCATGG	1 cut(s)	1349
BspANI	GGCC	6 cut(s)	5, 68, 125, 910, 1633, 1734
BspCNI	CTCAG	2 cut(s)	460, 1093
BspFNI	CGCG	4 cut(s)	233, 263, 434, 1611
BspLI	GGNNCC	5 cut(s)	290, 1137, 1297, 1347, 1451
BspMAI	CTGCAG	3 cut(s)	916, 1514, 1866
BspMI	ACCTGC	3 cut(s)	1057, 1517, 1687
BspT104I	TTCGAA	2 cut(s)	297, 524
BspT107I	GGYRCC	2 cut(s)	1135, 1449
BsrBI	CCGCTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	640
BsrFI	RCCGGY	1 cut(s)	454
BsrGI	TGTACA	1 cut(s)	1906
BsrI	ACTGG	3 cut(s)	1414, 1451, 1453
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	761, 1217, 1349
BssMI	GATC	4 cut(s)	340, 555, 1104, 1385
BssNI	GRCGYC	2 cut(s)	249, 1450
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	1349
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	6 cut(s)	762, 907, 1133, 1219, 1300, 1839
Bst4CI	ACNGT	3 cut(s)	422, 1077, 1118
Bst6I	CTCTTC	2 cut(s)	299, 501
BstACI	GRCGYC	2 cut(s)	249, 1450
BstAUI	TGTACA	1 cut(s)	1906
BstBAI	YACGTR	2 cut(s)	848, 1643
BstBI	TTCGAA	2 cut(s)	297, 524
BstC8I	GCNNGC	2 cut(s)	912, 1736
BstDEI	CTNAG	2 cut(s)	468, 1101
BstDSI	CCRYGG	1 cut(s)	1349
BstENI	CCTNNNNNAGG	1 cut(s)	1086
BstF5I	GGATG	3 cut(s)	192, 1390, 1597
BstFNI	CGCG	4 cut(s)	233, 263, 434, 1611
BstH2I	RGCGCY	1 cut(s)	1453
BstHHI	GCGC	5 cut(s)	235, 265, 434, 1452, 1599
BstKTI	GATC	4 cut(s)	343, 558, 1107, 1388
BstMAI	GTCTC	4 cut(s)	15, 113, 458, 938
BstMBI	GATC	4 cut(s)	340, 555, 1104, 1385
BstMCI	CGRYCG	1 cut(s)	328
BstNI	CCWGG	6 cut(s)	762, 907, 1133, 1219, 1300, 1839
BstNSI	RCATGY	5 cut(s)	730, 1043, 1371, 1575, 1808
BstSCI	CCNGG	7 cut(s)	372, 760, 905, 1131, 1217, 1298, 1837
BstSFI	CTRYAG	4 cut(s)	888, 912, 1510, 1862
BstSLI	GKGCMC	1 cut(s)	1082
BstUI	CGCG	4 cut(s)	233, 263, 434, 1611
BstV1I	GCAGC	8 cut(s)	840, 1278, 1690, 1714, 1786, 1789, 1876, 1894
BstV2I	GAAGAC	3 cut(s)	150, 324, 1416
BsuRI	GGCC	6 cut(s)	5, 68, 125, 910, 1633, 1734
BtgI	CCRYGG	1 cut(s)	1349
BtgZI	GCGATG	1 cut(s)	82
BtrI	CACGTC	3 cut(s)	1844, 1943, 1976
BtsCI	GGATG	3 cut(s)	192, 1390, 1597
BtsI	GCAGTG	1 cut(s)	931
BtsIMutI	CAGTG	5 cut(s)	931, 969, 1082, 1444, 1460
BveI	ACCTGC	3 cut(s)	1057, 1517, 1687
Cac8I	GCNNGC	2 cut(s)	912, 1736
CaiI	CAGNNNCTG	1 cut(s)	1420
CfoI	GCGC	5 cut(s)	235, 265, 434, 1452, 1599
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	5 cut(s)	220, 288, 361, 1345, 1632
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	7 cut(s)	16, 394, 418, 1124, 1799, 1907, 1994
CviQI	GTAC	7 cut(s)	16, 394, 418, 1124, 1799, 1907, 1994
DdeI	CTNAG	2 cut(s)	468, 1101
DinI	GGCGCC	1 cut(s)	1451
DpnI	GATC	4 cut(s)	342, 557, 1106, 1387
DpnII	GATC	4 cut(s)	340, 555, 1104, 1385
DraIII	CACNNNGTG	1 cut(s)	851
DrdI	GACNNNNNNGTC	1 cut(s)	227
DriI	GACNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	2 cut(s)	3, 66
Eam1104I	CTCTTC	2 cut(s)	299, 501
Eam1105I	GACNNNNNGTC	1 cut(s)	433
EarI	CTCTTC	2 cut(s)	299, 501
EciI	GGCGGA	2 cut(s)	162, 171
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	1349
Eco24I	GRGCYC	2 cut(s)	63, 672
Eco47I	GGWCC	4 cut(s)	220, 288, 361, 1345
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	88, 1442
Eco88I	CYCGRG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	1086
EcoO109I	RGGNCCY	1 cut(s)	1345
EcoRII	CCWGG	6 cut(s)	760, 905, 1131, 1217, 1298, 1837
EcoT14I	CCWWGG	1 cut(s)	1349
EcoT22I	ATGCAT	1 cut(s)	1310
EcoT38I	GRGCYC	2 cut(s)	63, 672
EgeI	GGCGCC	1 cut(s)	1451
EheI	GGCGCC	1 cut(s)	1451
ErhI	CCWWGG	1 cut(s)	1349
Esp3I	CGTCTC	1 cut(s)	15
FalI	AAGNNNNNCTT	2 cut(s)	1235, 1267
FaqI	GGGAC	3 cut(s)	274, 356, 1331
FauI	CCCGC	1 cut(s)	1270
FokI	GGATG	3 cut(s)	179, 1377, 1604
FriOI	GRGCYC	2 cut(s)	63, 672
FspBI	CTAG	4 cut(s)	567, 921, 1145, 2026
FspI	TGCGCA	1 cut(s)	1598
GlaI	GCGC	5 cut(s)	234, 264, 433, 1451, 1598
GsaI	CCCAGC	2 cut(s)	543, 549
GsuI	CTGGAG	2 cut(s)	623, 1314
HaeII	RGCGCY	1 cut(s)	1453
HaeIII	GGCC	6 cut(s)	5, 68, 125, 910, 1633, 1734
HapII	CCGG	4 cut(s)	331, 374, 455, 1630
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	5 cut(s)	235, 265, 434, 1452, 1599
Hin1I	GRCGYC	2 cut(s)	249, 1450
Hin6I	GCGC	5 cut(s)	233, 263, 432, 1450, 1597
HinP1I	GCGC	5 cut(s)	233, 263, 432, 1450, 1597
HinfI	GANTC	6 cut(s)	83, 334, 521, 598, 1167, 1175
HpaII	CCGG	4 cut(s)	331, 374, 455, 1630
HphI	GGTGA	1 cut(s)	637
Hpy166II	GTNNAC	3 cut(s)	1895, 1946, 1979
Hpy188I	TCNGA	7 cut(s)	46, 88, 345, 579, 1102, 1360, 1712
Hpy188III	TCNNGA	5 cut(s)	253, 338, 602, 1085, 1293
Hpy8I	GTNNAC	3 cut(s)	1895, 1946, 1979
HpyCH4III	ACNGT	3 cut(s)	422, 1077, 1118
HpyCH4IV	ACGT	8 cut(s)	213, 249, 369, 847, 1642, 1843, 1942, 1975
HpyF3I	CTNAG	2 cut(s)	468, 1101
HpySE526I	ACGT	8 cut(s)	213, 249, 369, 847, 1642, 1843, 1942, 1975
Hsp92I	GRCGYC	2 cut(s)	249, 1450
HspAI	GCGC	5 cut(s)	233, 263, 432, 1450, 1597
KasI	GGCGCC	1 cut(s)	1449
Kzo9I	GATC	4 cut(s)	340, 555, 1104, 1385
LmnI	GCTCC	5 cut(s)	168, 387, 646, 1295, 1544
Lsp1109I	GCAGC	8 cut(s)	840, 1278, 1690, 1714, 1786, 1789, 1876, 1894
LweI	GCATC	2 cut(s)	1295, 1399
MaeI	CTAG	4 cut(s)	567, 921, 1145, 2026
MaeII	ACGT	8 cut(s)	213, 249, 369, 847, 1642, 1843, 1942, 1975
MaeIII	GTNAC	6 cut(s)	560, 703, 742, 851, 1189, 1496
MalI	GATC	4 cut(s)	342, 557, 1106, 1387
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	4 cut(s)	340, 555, 1104, 1385
MboII	GAAGA	8 cut(s)	150, 286, 329, 518, 607, 822, 1170, 1421
MfeI	CAATTG	2 cut(s)	993, 1336
MhlI	GDGCHC	3 cut(s)	63, 672, 1082
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	1450
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	111
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1310
MroXI	GAANNNNTTC	1 cut(s)	988
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	858, 1050, 1059, 1232, 1461
MslI	CAYNNNNRTG	1 cut(s)	1890
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	331, 374, 455, 1630
MspR9I	CCNGG	7 cut(s)	374, 762, 907, 1133, 1219, 1300, 1839
MunI	CAATTG	2 cut(s)	993, 1336
Mva1269I	GAATGC	1 cut(s)	1354
MvaI	CCWGG	6 cut(s)	762, 907, 1133, 1219, 1300, 1839
MvnI	CGCG	4 cut(s)	233, 263, 434, 1611
NarI	GGCGCC	1 cut(s)	1450
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	1349
NdeII	GATC	4 cut(s)	340, 555, 1104, 1385
NlaIV	GGNNCC	5 cut(s)	290, 1137, 1297, 1347, 1451
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	4 cut(s)	560, 703, 851, 1189
NsbI	TGCGCA	1 cut(s)	1598
NsiI	ATGCAT	1 cut(s)	1310
NspI	RCATGY	5 cut(s)	730, 1043, 1371, 1575, 1808
NspV	TTCGAA	2 cut(s)	297, 524
OliI	CACNNNNGTG	1 cut(s)	1890
PaeR7I	CTCGAG	1 cut(s)	242
PaqCI	CACCTGC	2 cut(s)	1057, 1687
PciI	ACATGT	1 cut(s)	1571
PcsI	WCGNNNNNNNCGW	5 cut(s)	204, 207, 279, 443, 446
PctI	GAATGC	1 cut(s)	1354
PdmI	GAANNNNTTC	1 cut(s)	988
PfeI	GAWTC	5 cut(s)	334, 521, 598, 1167, 1175
Pfl23II	CGTACG	1 cut(s)	417
PflFI	GACNNNGTC	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	372
PleI	GAGTC	1 cut(s)	77
PluTI	GGCGCC	1 cut(s)	1453
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	2 cut(s)	848, 1643
PpuMI	RGGWCCY	1 cut(s)	1345
PscI	ACATGT	1 cut(s)	1571
PshBI	ATTAAT	1 cut(s)	1232
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	1345
Psp6I	CCWGG	6 cut(s)	760, 905, 1131, 1217, 1298, 1837
PspFI	CCCAGC	2 cut(s)	539, 545
PspGI	CCWGG	6 cut(s)	760, 905, 1131, 1217, 1298, 1837
PspLI	CGTACG	1 cut(s)	417
PspN4I	GGNNCC	5 cut(s)	290, 1137, 1297, 1347, 1451
PspPI	GGNCC	5 cut(s)	220, 288, 361, 1345, 1632
PspPPI	RGGWCCY	1 cut(s)	1345
PspXI	VCTCGAGB	1 cut(s)	242
PstI	CTGCAG	3 cut(s)	916, 1514, 1866
PstNI	CAGNNNCTG	1 cut(s)	1420
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	7 cut(s)	17, 395, 419, 1125, 1800, 1908, 1995
RsaNI	GTAC	7 cut(s)	16, 394, 418, 1124, 1799, 1907, 1994
RseI	CAYNNNNRTG	1 cut(s)	1890
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	5 cut(s)	858, 1050, 1059, 1232, 1461
Sau3AI	GATC	4 cut(s)	340, 555, 1104, 1385
Sau96I	GGNCC	5 cut(s)	220, 288, 361, 1345, 1632
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	7 cut(s)	374, 762, 907, 1133, 1219, 1300, 1839
SduI	GDGCHC	3 cut(s)	63, 672, 1082
SfaNI	GCATC	2 cut(s)	1295, 1399
SfcI	CTRYAG	4 cut(s)	888, 912, 1510, 1862
SfoI	GGCGCC	1 cut(s)	1451
Sfr274I	CTCGAG	1 cut(s)	242
SfuI	TTCGAA	2 cut(s)	297, 524
SinI	GGWCC	4 cut(s)	220, 288, 361, 1345
SlaI	CTCGAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	1890
SmlI	CTYRAG	2 cut(s)	242, 650
SmoI	CTYRAG	2 cut(s)	242, 650
SpeI	ACTAGT	1 cut(s)	1144
SspDI	GGCGCC	1 cut(s)	1449
SspI	AATATT	2 cut(s)	824, 1111
SspMI	CTAG	4 cut(s)	567, 921, 1145, 2026
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	7 cut(s)	372, 760, 905, 1131, 1217, 1298, 1837
StyI	CCWWGG	1 cut(s)	1349
TaaI	ACNGT	3 cut(s)	422, 1077, 1118
TaiI	ACGT	8 cut(s)	216, 252, 372, 850, 1645, 1846, 1945, 1978
TaqI	TCGA	8 cut(s)	93, 243, 297, 324, 449, 524, 585, 982
TatI	WGTACW	2 cut(s)	1798, 1906
TauI	GCSGC	4 cut(s)	71, 187, 190, 1678
TfiI	GAWTC	5 cut(s)	334, 521, 598, 1167, 1175
Tru1I	TTAA	5 cut(s)	858, 1050, 1059, 1232, 1461
Tru9I	TTAA	5 cut(s)	858, 1050, 1059, 1232, 1461
TscAI	CASTG	5 cut(s)	931, 976, 1082, 1451, 1460
TseFI	GTSAC	4 cut(s)	560, 703, 851, 1189
TseI	GCWGC	8 cut(s)	828, 1266, 1678, 1702, 1774, 1777, 1864, 1882
Tsp45I	GTSAC	4 cut(s)	560, 703, 851, 1189
TspDTI	ATGAA	6 cut(s)	1046, 1325, 1454, 1764, 1830, 1926
TspRI	CASTG	5 cut(s)	931, 976, 1082, 1451, 1460
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	4 cut(s)	220, 288, 361, 1345
VspI	ATTAAT	1 cut(s)	1232
XagI	CCTNNNNNAGG	1 cut(s)	1086
XapI	RAATTY	3 cut(s)	257, 346, 815
XceI	RCATGY	5 cut(s)	730, 1043, 1371, 1575, 1808
XhoI	CTCGAG	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	988
XspI	CTAG	4 cut(s)	567, 921, 1145, 2026
ZraI	GACGTC	1 cut(s)	250
Zsp2I	ATGCAT	1 cut(s)	1310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.