Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

60068033 .. 60072025

Gene Structure 3993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG434100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2070 bp

ATGGCCACCCCTGCGTACCGAGACGACCTCCACACCATTCTCTCCGAGCAACGCCGAGAGCTCATGGCCGCCAAAACCCTAGACTCCGACCTCGACATCGCCTTCAGTCTCCAAATGCAGGAAGCCATGACCGCCTCCCTCTCTCAACAGCCCTCGTCTTCGCGCCCTCCTCCGCCTCCGCCGCTCATCCACGACGAATACGACGACGTATTGGACCTCGCCGTCGCGCTCATGCTCGAGGACGTCCAGAAATTCGCGCAGGAATACGACGACCACGAGCGGTCCCTCTTCGAAATAAGGCAGGCGAAGGAAGACCTCGACCGCCGGATTCACGATCAGAATTTCGCCGACGAGGTCCGCAACGTCCCGGAGGACTATTGGAGCAAGTACGGCGATTACTACGAGAAGCCGTACTGTGGCGACGGCGCGTCTTCGTCGTCGTCGTCGAAACCGGCGGTGGAGACTGAGTGTTTGAGATTGTATTGCAAGGGTTTGGTTGGTGAAGAGGTGGTTAGGGATTCGAAGGTGGTGGTGGCTGGGGCTGGGGTTGCGATTTGTGACCCTAGAGATAATCTGATATTCGAGGCGAGGAAGAATCTGGAGGCGTTTGATGGTGGTGTGGTGATGAGCAATGAGGCTGTGGAGCTTGAGGCTCTCCTTGAAGGGCTCAATACAGCTCTCACTCTGGAGTTGAAAAATGTCACATTTTTCTGTGATGGCTACATGCTTTACCAATACGTTACAGGCAGAGTGCTTCCTGGGAACAGCAAGGTTGCAACATTAGTCAATCAATTAGGAGTTCTACGAAGAAAATTTGAATATTGCAGCCTTTCTTTTGTGGCACGTAGTGACATTAAGTTTGCATTTCAATTTGCAAGAGAAGCTATAGTTTCTCAAATAACCTGGCCTGCAGAAACTAGCAGTGGCAAATCTTTGAAGGAGACTTGTGTAATTTGTTTTGAGGACACTGATGTTGGTCGAATGTTTTCAATTGATGGTTGTCTGCACAGGTATTGCTTTTCTTGTATGAAACAGCATGTAGAAGTTAAGTTGCTTAATGGGCAGGTGGCACAGTGCCCTCACGAAGGCTGTAATTCTGAGGTCAATATTGACAGTTGCGTACAATTCCTGGCACCTCAACTAGTTGAGGTTATGAGCCAAAGAATCAAGGAATCTTCTATTCCTGTCACAGAAAAAGTTTATTGCCCAAAACCCAGGTGTTCTGCATTGATGTCCAAAAAGGAGGTCTTGCAATATACAAGCAGCTTTTATGCGGGTGCTGAACAATCTGGAGCCAGGAGATGCATGAAATGTCATTCCTATTTTTGTATCAATTGCAAGGTCCCATGGCATTCGGACATGACATGCTATGATTACAAAAGATCGCATCCCTATCCCCTTGCAGAAGACCAGTTGCTGAAGTCGTTGGCTACAATGAAACACTGGCGCCAGTGTGTTAAGTGCAAGAATATGGTTGAACTCGCAGAAGGTTGTTACCACATTACTTGCAGATGTGGATATGAGTTCTGCTATACTTGCGGAGCTGAATGGAAGGACAAGAAACCAACATGTTCCTGCCCAATCTGGGATGTGCGCAACATCATTCGCGAACAGCCACAACAAGTCCGGCCCATTATACGTGAGCAACCACGCCAAGTTCCCCAACAACTGCGGCAGCCCATTATGCCACGGCAGGTGCAGCCTATCAGACTTGAACACCAACGACAAGGCCAGCCCATTAGACATGAACAACGACAAAGATTTCAAGTGCAACAGCCCATTATGCCACAACAAGTACAGCATGTCATACATGAACAGCCACGACAAGGACAGCCTGGACGTGAGCCACCTCAACAACTGCAGCCCAATATATATCAGCAGCACCGACGTGGACAGCCTGTTGTACTTGAACAGCCACGACAGGCACAGCCCATTAGACGTGAACAGCCACGACAGGCACAGCCCATTAGACGTGAACAGCCACGACAGGTACGGCAACAACAGGATTATGACTACTATGAACAGCCACGACAGGTACGGCGACAAGATGATTACAACTACTATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

689

Amino Acids

79.69

Weight (kDa)

6.64

Isoelectric Point (pI)

59.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	178 - 295	5.2e-20	Reverse transcriptase-like
IBR	PF01485	398 - 456	2e-10	IBR domain, a half RING-finger domain
IBR	PF01485	471 - 524	5.5e-08	IBR domain, a half RING-finger domain
IBR_1	PF22191	483 - 520	3.8e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1054, 1684
AasI	GACNNNNNNGTC	1 cut(s)	221
AatII	GACGTC	1 cut(s)	246
Acc16I	TGCGCA	1 cut(s)	1595
Acc36I	ACCTGC	2 cut(s)	1054, 1684
AccB1I	GGYRCC	2 cut(s)	1132, 1446
AccBSI	CCGCTC	2 cut(s)	184, 280
AccII	CGCG	5 cut(s)	163, 227, 257, 428, 1608
AcoI	YGGCCR	2 cut(s)	3, 66
AcsI	RAATTY	3 cut(s)	251, 340, 812
AcuI	CTGAAG	2 cut(s)	88, 1439
AcyI	GRCGYC	2 cut(s)	243, 1447
AdeI	CACNNNGTG	1 cut(s)	848
AfaI	GTAC	8 cut(s)	17, 389, 413, 1122, 1797, 1905, 1992, 2037
AfiI	CCNNNNNNNGG	5 cut(s)	118, 416, 1085, 1585, 1826
AflIII	ACRYGT	1 cut(s)	1568
AhdI	GACNNNNNGTC	1 cut(s)	427
AhlI	ACTAGT	1 cut(s)	1141
AjiI	CACGTC	4 cut(s)	1841, 1889, 1940, 1973
AjnI	CCWGG	6 cut(s)	757, 902, 1128, 1214, 1295, 1834
AleI	CACNNNNGTG	1 cut(s)	1887
AluBI	AGCT	6 cut(s)	61, 646, 677, 884, 1266, 1544
AluI	AGCT	6 cut(s)	61, 646, 677, 884, 1266, 1544
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	4 cut(s)	15, 113, 455, 935
AlwNI	CAGNNNCTG	1 cut(s)	1417
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	5 cut(s)	3, 66, 905, 1628, 1729
ApeKI	GCWGC	6 cut(s)	825, 1263, 1675, 1699, 1861, 1879
ApoI	RAATTY	3 cut(s)	251, 340, 812
ArsI	GACNNNNNNTTYG	6 cut(s)	454, 486, 842, 874, 1230, 1262
Asp700I	GAANNNNTTC	1 cut(s)	985
AspLEI	GCGC	6 cut(s)	165, 229, 259, 428, 1449, 1596
AspS9I	GGNCC	5 cut(s)	214, 282, 355, 1342, 1629
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	2 cut(s)	512, 634
AsuII	TTCGAA	2 cut(s)	291, 521
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	4 cut(s)	214, 282, 355, 1342
BaeGI	GKGCMC	1 cut(s)	1079
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	1132, 1446
BanII	GRGCYC	2 cut(s)	63, 669
BauI	CACGAG	1 cut(s)	275
BbsI	GAAGAC	4 cut(s)	150, 318, 423, 1413
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	6 cut(s)	837, 1275, 1687, 1711, 1873, 1891
BccI	CCATC	3 cut(s)	605, 710, 989
BceAI	ACGGC	7 cut(s)	206, 394, 406, 439, 1706, 2009, 2054
BciT130I	CCWGG	6 cut(s)	759, 904, 1130, 1216, 1297, 1836
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	4 cut(s)	15, 113, 455, 935
BcuI	ACTAGT	1 cut(s)	1141
BfaI	CTAG	5 cut(s)	80, 564, 918, 1142, 2068
BfmI	CTRYAG	3 cut(s)	885, 909, 1859
BfoI	RGCGCY	1 cut(s)	1450
BfuAI	ACCTGC	2 cut(s)	1054, 1684
BisI	GCNGC	9 cut(s)	69, 182, 826, 1264, 1673, 1676, 1700, 1862, 1880
BlsI	GCNGC	9 cut(s)	70, 183, 827, 1265, 1674, 1677, 1701, 1863, 1881
Bme1390I	CCNGG	7 cut(s)	368, 759, 904, 1130, 1216, 1297, 1836
Bme18I	GGWCC	4 cut(s)	214, 282, 355, 1342
BmeRI	GACNNNNNGTC	1 cut(s)	427
BmeT110I	CYCGRG	1 cut(s)	236
BmgBI	CACGTC	4 cut(s)	1841, 1889, 1940, 1973
BmgT120I	GGNCC	5 cut(s)	214, 282, 355, 1342, 1629
BmiI	GGNNCC	5 cut(s)	284, 1134, 1294, 1344, 1448
BmrFI	CCNGG	7 cut(s)	368, 759, 904, 1130, 1216, 1297, 1836
BmsI	GCATC	2 cut(s)	1292, 1396
BpiI	GAAGAC	4 cut(s)	150, 318, 423, 1413
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpmI	CTGGAG	3 cut(s)	620, 707, 1311
Bpu14I	TTCGAA	2 cut(s)	291, 521
BpuEI	CTTGAG	1 cut(s)	668
BpuMI	CCSGG	1 cut(s)	368
BsaAI	YACGTR	2 cut(s)	845, 1640
BsaHI	GRCGYC	2 cut(s)	243, 1447
BsaJI	CCNNGG	4 cut(s)	758, 1214, 1346, 1688
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 416, 1085, 1585, 1826
Bse118I	RCCGGY	1 cut(s)	451
Bse1I	ACTGG	3 cut(s)	1411, 1448, 1450
Bse3DI	GCAATG	1 cut(s)	637
BseBI	CCWGG	6 cut(s)	759, 904, 1130, 1216, 1297, 1836
BseDI	CCNNGG	4 cut(s)	758, 1214, 1346, 1688
BseGI	GGATG	3 cut(s)	186, 1387, 1594
BseLI	CCNNNNNNNGG	5 cut(s)	118, 416, 1085, 1585, 1826
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	2 cut(s)	456, 1089
BseNI	ACTGG	3 cut(s)	1411, 1448, 1450
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	1079
BseXI	GCAGC	6 cut(s)	837, 1275, 1687, 1711, 1873, 1891
BseYI	CCCAGC	2 cut(s)	536, 542
BsgI	GTGCAG	2 cut(s)	989, 1718
Bsh1236I	CGCG	5 cut(s)	163, 227, 257, 428, 1608
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	5 cut(s)	5, 68, 907, 1630, 1731
BshNI	GGYRCC	2 cut(s)	1132, 1446
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	4 cut(s)	325, 368, 452, 1627
BslFI	GGGAC	3 cut(s)	268, 350, 1328
BslI	CCNNNNNNNGG	5 cut(s)	118, 416, 1085, 1585, 1826
BsmAI	GTCTC	4 cut(s)	15, 113, 455, 935
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	3 cut(s)	268, 350, 1328
BsmI	GAATGC	1 cut(s)	1351
BsnI	GGCC	5 cut(s)	5, 68, 907, 1630, 1731
BsoBI	CYCGRG	1 cut(s)	236
Bsp119I	TTCGAA	2 cut(s)	291, 521
Bsp1286I	GDGCHC	3 cut(s)	63, 669, 1079
Bsp143I	GATC	2 cut(s)	334, 1382
Bsp19I	CCATGG	1 cut(s)	1346
Bsp68I	TCGCGA	1 cut(s)	1608
BspANI	GGCC	5 cut(s)	5, 68, 907, 1630, 1731
BspCNI	CTCAG	2 cut(s)	457, 1090
BspFNI	CGCG	5 cut(s)	163, 227, 257, 428, 1608
BspLI	GGNNCC	5 cut(s)	284, 1134, 1294, 1344, 1448
BspMAI	CTGCAG	2 cut(s)	913, 1863
BspMI	ACCTGC	2 cut(s)	1054, 1684
BspT104I	TTCGAA	2 cut(s)	291, 521
BspT107I	GGYRCC	2 cut(s)	1132, 1446
BsrBI	CCGCTC	2 cut(s)	184, 280
BsrDI	GCAATG	1 cut(s)	637
BsrFI	RCCGGY	1 cut(s)	451
BsrI	ACTGG	3 cut(s)	1411, 1448, 1450
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	4 cut(s)	758, 1214, 1346, 1688
BssMI	GATC	2 cut(s)	334, 1382
BssNI	GRCGYC	2 cut(s)	243, 1447
BssSI	CACGAG	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	1346
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	6 cut(s)	759, 904, 1130, 1216, 1297, 1836
Bst4CI	ACNGT	3 cut(s)	416, 1074, 1115
Bst6I	CTCTTC	2 cut(s)	293, 498
BstACI	GRCGYC	2 cut(s)	243, 1447
BstBAI	YACGTR	2 cut(s)	845, 1640
BstBI	TTCGAA	2 cut(s)	291, 521
BstC8I	GCNNGC	3 cut(s)	303, 909, 1733
BstDEI	CTNAG	2 cut(s)	465, 1098
BstDSI	CCRYGG	2 cut(s)	1346, 1688
BstENI	CCTNNNNNAGG	1 cut(s)	1083
BstF5I	GGATG	3 cut(s)	186, 1387, 1594
BstFNI	CGCG	5 cut(s)	163, 227, 257, 428, 1608
BstH2I	RGCGCY	1 cut(s)	1450
BstHHI	GCGC	6 cut(s)	165, 229, 259, 428, 1449, 1596
BstKTI	GATC	2 cut(s)	337, 1385
BstMAI	GTCTC	4 cut(s)	15, 113, 455, 935
BstMBI	GATC	2 cut(s)	334, 1382
BstMCI	CGRYCG	1 cut(s)	322
BstNI	CCWGG	6 cut(s)	759, 904, 1130, 1216, 1297, 1836
BstNSI	RCATGY	5 cut(s)	727, 1040, 1368, 1572, 1805
BstSCI	CCNGG	7 cut(s)	366, 757, 902, 1128, 1214, 1295, 1834
BstSFI	CTRYAG	3 cut(s)	885, 909, 1859
BstSLI	GKGCMC	1 cut(s)	1079
BstUI	CGCG	5 cut(s)	163, 227, 257, 428, 1608
BstV1I	GCAGC	6 cut(s)	837, 1275, 1687, 1711, 1873, 1891
BstV2I	GAAGAC	4 cut(s)	150, 318, 423, 1413
BsuRI	GGCC	5 cut(s)	5, 68, 907, 1630, 1731
BtgI	CCRYGG	2 cut(s)	1346, 1688
BtgZI	GCGATG	1 cut(s)	82
BtrI	CACGTC	4 cut(s)	1841, 1889, 1940, 1973
BtsCI	GGATG	3 cut(s)	186, 1387, 1594
BtsI	GCAGTG	1 cut(s)	928
BtsIMutI	CAGTG	5 cut(s)	928, 966, 1079, 1441, 1457
BtuMI	TCGCGA	1 cut(s)	1608
BveI	ACCTGC	2 cut(s)	1054, 1684
Cac8I	GCNNGC	3 cut(s)	303, 909, 1733
CaiI	CAGNNNCTG	1 cut(s)	1417
CfoI	GCGC	6 cut(s)	165, 229, 259, 428, 1449, 1596
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	5 cut(s)	214, 282, 355, 1342, 1629
CseI	GACGC	1 cut(s)	417
Csp6I	GTAC	8 cut(s)	16, 388, 412, 1121, 1796, 1904, 1991, 2036
CspCI	CAANNNNNGTGG	2 cut(s)	1487, 1522
CviQI	GTAC	8 cut(s)	16, 388, 412, 1121, 1796, 1904, 1991, 2036
DdeI	CTNAG	2 cut(s)	465, 1098
DinI	GGCGCC	1 cut(s)	1448
DpnI	GATC	2 cut(s)	336, 1384
DpnII	GATC	2 cut(s)	334, 1382
DraIII	CACNNNGTG	1 cut(s)	848
DrdI	GACNNNNNNGTC	1 cut(s)	221
DriI	GACNNNNNGTC	1 cut(s)	427
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	3, 66
Eam1104I	CTCTTC	2 cut(s)	293, 498
Eam1105I	GACNNNNNGTC	1 cut(s)	427
EarI	CTCTTC	2 cut(s)	293, 498
EciI	GGCGGA	2 cut(s)	162, 168
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	1346
Eco24I	GRGCYC	2 cut(s)	63, 669
Eco47I	GGWCC	4 cut(s)	214, 282, 355, 1342
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	88, 1439
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	1083
EcoO109I	RGGNCCY	1 cut(s)	1342
EcoRII	CCWGG	6 cut(s)	757, 902, 1128, 1214, 1295, 1834
EcoT14I	CCWWGG	1 cut(s)	1346
EcoT22I	ATGCAT	1 cut(s)	1307
EcoT38I	GRGCYC	2 cut(s)	63, 669
EgeI	GGCGCC	1 cut(s)	1448
EheI	GGCGCC	1 cut(s)	1448
ErhI	CCWWGG	1 cut(s)	1346
Esp3I	CGTCTC	1 cut(s)	15
FalI	AAGNNNNNCTT	2 cut(s)	1232, 1264
FaqI	GGGAC	3 cut(s)	268, 350, 1328
FauI	CCCGC	1 cut(s)	1267
Fnu4HI	GCNGC	9 cut(s)	69, 182, 826, 1264, 1673, 1676, 1700, 1862, 1880
FokI	GGATG	3 cut(s)	173, 1374, 1601
FriOI	GRGCYC	2 cut(s)	63, 669
Fsp4HI	GCNGC	9 cut(s)	69, 182, 826, 1264, 1673, 1676, 1700, 1862, 1880
FspBI	CTAG	5 cut(s)	80, 564, 918, 1142, 2068
FspI	TGCGCA	1 cut(s)	1595
GlaI	GCGC	6 cut(s)	164, 228, 258, 427, 1448, 1595
GluI	GCNGC	9 cut(s)	69, 182, 826, 1264, 1673, 1676, 1700, 1862, 1880
GsaI	CCCAGC	2 cut(s)	540, 546
GsuI	CTGGAG	3 cut(s)	620, 707, 1311
HaeII	RGCGCY	1 cut(s)	1450
HaeIII	GGCC	5 cut(s)	5, 68, 907, 1630, 1731
HapII	CCGG	4 cut(s)	325, 368, 452, 1627
HgaI	GACGC	1 cut(s)	417
HhaI	GCGC	6 cut(s)	165, 229, 259, 428, 1449, 1596
Hin1I	GRCGYC	2 cut(s)	243, 1447
Hin6I	GCGC	6 cut(s)	163, 227, 257, 426, 1447, 1594
HinP1I	GCGC	6 cut(s)	163, 227, 257, 426, 1447, 1594
HinfI	GANTC	6 cut(s)	83, 328, 518, 595, 1164, 1172
HpaII	CCGG	4 cut(s)	325, 368, 452, 1627
HphI	GGTGA	2 cut(s)	512, 634
Hpy166II	GTNNAC	3 cut(s)	1892, 1943, 1976
Hpy188I	TCNGA	7 cut(s)	46, 88, 339, 576, 1099, 1357, 1709
Hpy188III	TCNNGA	7 cut(s)	247, 332, 599, 686, 1082, 1290, 1607
Hpy8I	GTNNAC	3 cut(s)	1892, 1943, 1976
HpyAV	CCTTC	8 cut(s)	112, 301, 517, 656, 931, 1079, 1481, 1546
HpyCH4III	ACNGT	3 cut(s)	416, 1074, 1115
HpyF3I	CTNAG	2 cut(s)	465, 1098
Hsp92I	GRCGYC	2 cut(s)	243, 1447
HspAI	GCGC	6 cut(s)	163, 227, 257, 426, 1447, 1594
KasI	GGCGCC	1 cut(s)	1446
Kzo9I	GATC	2 cut(s)	334, 1382
LmnI	GCTCC	4 cut(s)	381, 643, 1292, 1541
Lsp1109I	GCAGC	6 cut(s)	837, 1275, 1687, 1711, 1873, 1891
LweI	GCATC	2 cut(s)	1292, 1396
MaeI	CTAG	5 cut(s)	80, 564, 918, 1142, 2068
MaeIII	GTNAC	6 cut(s)	557, 700, 739, 848, 1186, 1493
MalI	GATC	2 cut(s)	336, 1384
MbiI	CCGCTC	2 cut(s)	184, 280
MboI	GATC	2 cut(s)	334, 1382
MboII	GAAGA	9 cut(s)	150, 280, 323, 423, 515, 604, 819, 1167, 1418
MfeI	CAATTG	2 cut(s)	990, 1333
MhlI	GDGCHC	3 cut(s)	63, 669, 1079
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	1447
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	111
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1307
MroXI	GAANNNNTTC	1 cut(s)	985
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	855, 1047, 1056, 1458
MslI	CAYNNNNRTG	1 cut(s)	1887
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	325, 368, 452, 1627
MspR9I	CCNGG	7 cut(s)	368, 759, 904, 1130, 1216, 1297, 1836
MunI	CAATTG	2 cut(s)	990, 1333
Mva1269I	GAATGC	1 cut(s)	1351
MvaI	CCWGG	6 cut(s)	759, 904, 1130, 1216, 1297, 1836
MvnI	CGCG	5 cut(s)	163, 227, 257, 428, 1608
NarI	GGCGCC	1 cut(s)	1447
NciI	CCSGG	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	1346
NdeII	GATC	2 cut(s)	334, 1382
NlaIV	GGNNCC	5 cut(s)	284, 1134, 1294, 1344, 1448
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	4 cut(s)	557, 700, 848, 1186
NruI	TCGCGA	1 cut(s)	1608
NsbI	TGCGCA	1 cut(s)	1595
NsiI	ATGCAT	1 cut(s)	1307
NspI	RCATGY	5 cut(s)	727, 1040, 1368, 1572, 1805
NspV	TTCGAA	2 cut(s)	291, 521
OliI	CACNNNNGTG	1 cut(s)	1887
PaeR7I	CTCGAG	1 cut(s)	236
PaqCI	CACCTGC	2 cut(s)	1054, 1684
PciI	ACATGT	1 cut(s)	1568
PcsI	WCGNNNNNNNCGW	5 cut(s)	198, 201, 273, 440, 443
PctI	GAATGC	1 cut(s)	1351
PdmI	GAANNNNTTC	1 cut(s)	985
PfeI	GAWTC	5 cut(s)	328, 518, 595, 1164, 1172
PflFI	GACNNNGTC	1 cut(s)	353
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	9 cut(s)	70, 183, 827, 1265, 1674, 1677, 1701, 1863, 1881
PleI	GAGTC	1 cut(s)	77
PluTI	GGCGCC	1 cut(s)	1450
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	2 cut(s)	845, 1640
PpuMI	RGGWCCY	1 cut(s)	1342
PscI	ACATGT	1 cut(s)	1568
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	1342
Psp6I	CCWGG	6 cut(s)	757, 902, 1128, 1214, 1295, 1834
PspFI	CCCAGC	2 cut(s)	536, 542
PspGI	CCWGG	6 cut(s)	757, 902, 1128, 1214, 1295, 1834
PspN4I	GGNNCC	5 cut(s)	284, 1134, 1294, 1344, 1448
PspPI	GGNCC	5 cut(s)	214, 282, 355, 1342, 1629
PspPPI	RGGWCCY	1 cut(s)	1342
PspXI	VCTCGAGB	1 cut(s)	236
PstI	CTGCAG	2 cut(s)	913, 1863
PstNI	CAGNNNCTG	1 cut(s)	1417
PsyI	GACNNNGTC	1 cut(s)	353
RruI	TCGCGA	1 cut(s)	1608
RsaI	GTAC	8 cut(s)	17, 389, 413, 1122, 1797, 1905, 1992, 2037
RsaNI	GTAC	8 cut(s)	16, 388, 412, 1121, 1796, 1904, 1991, 2036
RseI	CAYNNNNRTG	1 cut(s)	1887
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	4 cut(s)	855, 1047, 1056, 1458
SatI	GCNGC	9 cut(s)	69, 182, 826, 1264, 1673, 1676, 1700, 1862, 1880
Sau3AI	GATC	2 cut(s)	334, 1382
Sau96I	GGNCC	5 cut(s)	214, 282, 355, 1342, 1629
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	7 cut(s)	368, 759, 904, 1130, 1216, 1297, 1836
SduI	GDGCHC	3 cut(s)	63, 669, 1079
SfaNI	GCATC	2 cut(s)	1292, 1396
SfcI	CTRYAG	3 cut(s)	885, 909, 1859
SfoI	GGCGCC	1 cut(s)	1448
Sfr274I	CTCGAG	1 cut(s)	236
SfuI	TTCGAA	2 cut(s)	291, 521
SinI	GGWCC	4 cut(s)	214, 282, 355, 1342
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	1887
SmlI	CTYRAG	2 cut(s)	236, 647
SmoI	CTYRAG	2 cut(s)	236, 647
SpeI	ACTAGT	1 cut(s)	1141
SspDI	GGCGCC	1 cut(s)	1446
SspI	AATATT	2 cut(s)	821, 1108
SspMI	CTAG	5 cut(s)	80, 564, 918, 1142, 2068
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	7 cut(s)	366, 757, 902, 1128, 1214, 1295, 1834
StyI	CCWWGG	1 cut(s)	1346
TaaI	ACNGT	3 cut(s)	416, 1074, 1115
TaqI	TCGA	8 cut(s)	93, 237, 291, 318, 446, 521, 582, 979
TatI	WGTACW	2 cut(s)	1795, 1903
TauI	GCSGC	3 cut(s)	71, 184, 1675
TfiI	GAWTC	5 cut(s)	328, 518, 595, 1164, 1172
Tru1I	TTAA	4 cut(s)	855, 1047, 1056, 1458
Tru9I	TTAA	4 cut(s)	855, 1047, 1056, 1458
TscAI	CASTG	5 cut(s)	928, 973, 1079, 1448, 1457
TseFI	GTSAC	4 cut(s)	557, 700, 848, 1186
TseI	GCWGC	6 cut(s)	825, 1263, 1675, 1699, 1861, 1879
Tsp45I	GTSAC	4 cut(s)	557, 700, 848, 1186
TspDTI	ATGAA	6 cut(s)	1043, 1322, 1451, 1761, 1827, 2034
TspRI	CASTG	5 cut(s)	928, 973, 1079, 1448, 1457
Tth111I	GACNNNGTC	1 cut(s)	353
VpaK11BI	GGWCC	4 cut(s)	214, 282, 355, 1342
XagI	CCTNNNNNAGG	1 cut(s)	1083
XapI	RAATTY	3 cut(s)	251, 340, 812
XceI	RCATGY	5 cut(s)	727, 1040, 1368, 1572, 1805
XhoI	CTCGAG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	985
XspI	CTAG	5 cut(s)	80, 564, 918, 1142, 2068
ZraI	GACGTC	1 cut(s)	244
Zsp2I	ATGCAT	1 cut(s)	1307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.