Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

60169381 .. 60170560

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG434800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGTTATGTCAGAGACGACCCTCAGTCATGGAAGACCGTACGGACGAAGACAACCTCCGCTCCATTCTCTCCGACCACCTCAGGCACCTTAGGGAGGCCAAAACCCTCGAGTCCGACCACGACATGGCCTTCAATCTCCAACTACAGGAAGCCATGGCCACCTCTTTCCCTCTCCAACCCCCATCCACTTCTTCACCCAATCTCCACCCTCGCATTCAAGACAGCAATTTCGTAATCGATCTCACCGACTCGGCGGAGGCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

88

Amino Acids

10.1

Weight (kDa)

4.8

Isoelectric Point (pI)

77.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	84
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	60
AciI	CCGC	2 cut(s)	58, 254
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	3 cut(s)	94, 124, 145
AgsI	TTSAA	2 cut(s)	133, 218
AhdI	GACNNNNNGTC	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	7
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	4 cut(s)	96, 126, 156, 258
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AsuHPI	GGTGA	2 cut(s)	186, 235
AvaI	CYCGRG	1 cut(s)	107
AxyI	CCTNAGG	2 cut(s)	80, 89
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	39, 54
BccI	CCATC	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	7
BfmI	CTRYAG	1 cut(s)	143
BmeRI	GACNNNNNGTC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	86
BpiI	GAAGAC	2 cut(s)	39, 54
Bsa29I	ATCGAT	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	153
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 186, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 124, 145
Bse21I	CCTNAGG	2 cut(s)	80, 89
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	3 cut(s)	94, 124, 145
BseMII	CTCAG	2 cut(s)	36, 94
BshFI	GGCC	4 cut(s)	98, 128, 158, 260
BshNI	GGYRCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	107
BsiWI	CGTACG	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	94, 124, 145
BsmAI	GTCTC	1 cut(s)	7
BsmBI	CGTCTC	1 cut(s)	7
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	4 cut(s)	98, 128, 158, 260
BsoBI	CYCGRG	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	238
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	58, 254
BspANI	GGCC	4 cut(s)	98, 128, 158, 260
BspCNI	CTCAG	2 cut(s)	35, 93
BspDI	ATCGAT	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	84
BsrBI	CCGCTC	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	22, 80, 89
BstDSI	CCRYGG	1 cut(s)	153
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	182
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	143
BstV2I	GAAGAC	2 cut(s)	39, 54
Bsu15I	ATCGAT	1 cut(s)	237
Bsu36I	CCTNAGG	2 cut(s)	80, 89
BsuRI	GGCC	4 cut(s)	98, 128, 158, 260
BsuTUI	ATCGAT	1 cut(s)	237
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	3 cut(s)	28, 124, 154
CviJI	RGCY	5 cut(s)	98, 128, 152, 158, 260
CviKI_1	RGCY	5 cut(s)	98, 128, 152, 158, 260
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	3 cut(s)	22, 80, 89
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DriI	GACNNNNNGTC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	156
Eam1105I	GACNNNNNGTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	260
Eco81I	CCTNAGG	2 cut(s)	80, 89
Eco88I	CYCGRG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	7
FaeI	CATG	3 cut(s)	31, 127, 157
FaiI	YATR	4 cut(s)	7, 29, 125, 155
FatI	CATG	3 cut(s)	27, 123, 153
FokI	GGATG	1 cut(s)	169
HaeIII	GGCC	4 cut(s)	98, 128, 158, 260
Hin1II	CATG	3 cut(s)	31, 127, 157
HinfI	GANTC	2 cut(s)	110, 248
HphI	GGTGA	2 cut(s)	186, 235
Hpy188I	TCNGA	3 cut(s)	12, 73, 115
Hpy188III	TCNNGA	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	38
HpyF3I	CTNAG	3 cut(s)	22, 80, 89
Hsp92II	CATG	3 cut(s)	31, 127, 157
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	2 cut(s)	67, 131
MalI	GATC	1 cut(s)	240
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	1 cut(s)	238
MboII	GAAGA	3 cut(s)	44, 59, 183
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	1 cut(s)	226
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	2 cut(s)	119, 242
MmeI	TCCRAC	4 cut(s)	96, 138, 163, 199
MnlI	CCTC	9 cut(s)	31, 65, 88, 89, 116, 172, 180, 219, 250
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	3 cut(s)	31, 127, 157
NlaIV	GGNNCC	1 cut(s)	86
NmeAIII	GCCGAG	1 cut(s)	230
PaeR7I	CTCGAG	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	213
Pfl23II	CGTACG	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	124
PleI	GAGTC	2 cut(s)	118, 242
PpsI	GAGTC	2 cut(s)	118, 242
PspLI	CGTACG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	86
PspXI	VCTCGAGB	1 cut(s)	107
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	238
SchI	GAGTC	2 cut(s)	119, 242
SetI	ASST	4 cut(s)	57, 81, 90, 164
SfcI	CTRYAG	1 cut(s)	143
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	226
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	2 cut(s)	58, 254
StuI	AGGCCT	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	108, 237
TasI	AATT	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	124
XagI	CCTNNNNNAGG	1 cut(s)	92
XhoI	CTCGAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.