Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

24249019 .. 24252193

Gene Structure 3175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00019800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

ATGGAGGATCCAATCATGGATGATCATAGAGACGCAGAAGACCTCCAAGCCATTCTGGCGGAGCAGCGCAGAGAGCTCTTGGCAGCCAAAACCCTAGACTCCGACCTCGACATGGCATTCAATCTTCAAATGAAGGAAGCCCTCACCGCCTCTCTGGCTCTCCCTCCTCCAGACGTGGAGAGGTTTCCTCAGGAGTACGAGGACCACGAACGCAGCGTTTTGGAGGTGAAGAAACTGAAGACGGATCTCGACCGTCGGATTCACGACCAGAAGTTCGCTATCGACGTCCGTGACTTGCCTGAGGACTACTGGAGCGAGTACGGAGACGAATATGAAAGGCCGTACTGTACGGATGGGTCGTCGTCTTCAAAAGATGGGTTGCAGACTGAGTGTTTGAGATTGTATTGCAAGGGCTTGATTAGTGAAGAAGTGGTCAAGAATGTGAAGGTGGCGGTGGGTGGGATTGGGGTTGCGATTTGTGACCCGAGAGATAATCTGATTTTCGAGGCCAAGAAGAATCTAGAAGTGTTGATTGATGGCGAGATTATAAGCAATGAGGCTGCGGAGCTTGAGGCTCTCTGTGAAGGACTTAATAAAGCTCTCACACTGGACTTGAAAAATATCACCTTTTTCATTGATGACAACAAGCTTTACCAATATGTTACAGACGAAGTGGTTCCTGGGAACAGCAAGATTGCAACATTAGTCAATCAAGTTGCTCTTTTACAGAGAGAATTTGAATCTTGCAGCCCTTCTCTTGTGGCACCTAGTGAAATTAAGTTTGTGTTTAAATTTGCAAGAGATGCTATAGTTTCTCAGATCAGCTGGTGTGTAAAAACTCACAATGGCAAGAGTTTCAAGGAGACTTGTGCGATTTGTTTTGAAGAAACTGATGTTGCTCGCATGTTTTCAATCAATGATTGTCTGCACAGGTATTGCATTTCTTGTGTGAAAAAACATGTGGAAGTAAAGTTGCTTAGTGGGATGGTGGCACAGTGTCCACATGAAGCCTGTAATTCTGAGGTGAATATTGATAGCTATGAACAATTCTTGGCACCTAATCTTGTTGCGGTTATGAGCCAACAAATCAAGGAATCTTCTATTCCTGTTACAGAGAGAGTCTATTGCCCTTACCCCAAGTGTTCTGCCTTAATGTCCAAAATGGAGGTCTTTGAATATACCAAAACTTCTTACGTTGGTGCTGAAGAATCTGCAGCCAGGAAATGCATGAAATGTCATTACTATTTTTGTTTTGATTGCATGGTTCCTTGGCATTACAAAATGAGCTGCAAAGAGTACAAACAATCACATCCATTTCCCCCCAAAGAAGATCAACTGCTGAATTCATTGGCTACAACAAAACAGTGGCGCAACTGTAAGAAGTGCAACCACATGGTTGAACTTGCAGAAGGTTGTAACCACATCACTTGCAGGTGTGGATGTGAGTTCTGCTACACTTGTGGAGCTGAATGGAAGAACAAGAAACCAACATGTTCCTGCCCACTCTGGGATGAGCACTACATAATACATGAGCAGCCGCATCCAGTGCAGCCCATTATACATGAGCAGCCGCATCCAGTGCAGCCTATTGTACGTGTGCGCCCACGACAAGTTGCACCAGGAAATGAACAGCCAAGGCAGGATCCCAAACTTCTTCTGGAAAATAGTGGGGGTAAAGTTGATTGTAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

564

Amino Acids

64.35

Weight (kDa)

5.36

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	150 - 269	2.2e-17	Reverse transcriptase-like
IBR	PF01485	371 - 430	3e-10	IBR domain, a half RING-finger domain
IBR	PF01485	446 - 498	9.8e-06	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	548
AarI	CACCTGC	1 cut(s)	1422
AatII	GACGTC	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	1422
AccB1I	GGYRCC	2 cut(s)	763, 1054
AciI	CCGC	7 cut(s)	59, 147, 452, 563, 1070, 1538, 1571
AclWI	GGATC	5 cut(s)	2, 15, 252, 1637, 1650
AcsI	RAATTY	3 cut(s)	734, 791, 1342
AcuI	CTGAAG	2 cut(s)	257, 1224
AcyI	GRCGYC	1 cut(s)	285
AdeI	CACNNNGTG	1 cut(s)	770
AfaI	GTAC	6 cut(s)	197, 320, 344, 349, 1298, 1593
AfiI	CCNNNNNNNGG	2 cut(s)	112, 1507
AflIII	ACRYGT	3 cut(s)	958, 1490, 1594
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	3 cut(s)	679, 1217, 1618
AluBI	AGCT	8 cut(s)	76, 568, 599, 649, 825, 1038, 1287, 1466
AluI	AGCT	8 cut(s)	76, 568, 599, 649, 825, 1038, 1287, 1466
Alw21I	GWGCWC	2 cut(s)	78, 1518
Alw26I	GTCTC	3 cut(s)	24, 318, 857
AlwI	GGATC	5 cut(s)	2, 15, 252, 1637, 1650
Ama87I	CYCGRG	1 cut(s)	484
AoxI	GGCC	2 cut(s)	338, 507
ApoI	RAATTY	3 cut(s)	734, 791, 1342
ArsI	GACNNNNNNTTYG	6 cut(s)	257, 289, 376, 408, 1152, 1184
Asp700I	GAANNNNTTC	1 cut(s)	675
AspLEI	GCGC	3 cut(s)	69, 1371, 1602
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	4 cut(s)	136, 238, 616, 1036
AvaI	CYCGRG	1 cut(s)	484
AvaII	GGWCC	1 cut(s)	202
AxyI	CCTNAGG	2 cut(s)	189, 300
BamHI	GGATCC	2 cut(s)	7, 1642
BanI	GGYRCC	2 cut(s)	763, 1054
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	3 cut(s)	45, 245, 357
Bbv12I	GWGCWC	2 cut(s)	78, 1518
BccI	CCATC	4 cut(s)	347, 368, 530, 979
BceAI	ACGGC	1 cut(s)	325
BciT130I	CCWGG	3 cut(s)	681, 1219, 1620
BclI	TGATCA	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	24, 318, 857
BfaI	CTAG	3 cut(s)	95, 521, 768
BfmI	CTRYAG	2 cut(s)	807, 1212
BfuAI	ACCTGC	1 cut(s)	1422
BglI	GCCNNNNNGGC	2 cut(s)	56, 155
Bme1390I	CCNGG	3 cut(s)	681, 1219, 1620
Bme18I	GGWCC	1 cut(s)	202
BmeT110I	CYCGRG	1 cut(s)	484
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	6 cut(s)	9, 678, 765, 1056, 1266, 1644
BmrFI	CCNGG	3 cut(s)	681, 1219, 1620
BmsI	GCATC	3 cut(s)	793, 1549, 1582
BpiI	GAAGAC	3 cut(s)	45, 245, 357
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	2 cut(s)	153, 331
BpuEI	CTTGAG	1 cut(s)	590
BsaAI	YACGTR	1 cut(s)	1595
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	680, 1268, 1634
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 1507
Bse1I	ACTGG	4 cut(s)	314, 612, 1544, 1577
Bse21I	CCTNAGG	2 cut(s)	189, 300
Bse3DI	GCAATG	1 cut(s)	559
BseBI	CCWGG	3 cut(s)	681, 1219, 1620
BseDI	CCNNGG	3 cut(s)	680, 1268, 1634
BseGI	GGATG	8 cut(s)	25, 358, 990, 1309, 1445, 1516, 1540, 1573
BseLI	CCNNNNNNNGG	2 cut(s)	112, 1507
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	5 cut(s)	203, 291, 378, 830, 1011
BseNI	ACTGG	4 cut(s)	314, 612, 1544, 1577
BseRI	GAGGAG	1 cut(s)	156
BsgI	GTGCAG	3 cut(s)	911, 1568, 1601
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	340, 509
BshNI	GGYRCC	2 cut(s)	763, 1054
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	2 cut(s)	78, 1518
BsiHKCI	CYCGRG	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	112, 1507
BsmAI	GTCTC	3 cut(s)	24, 318, 857
BsmBI	CGTCTC	2 cut(s)	24, 318
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	340, 509
BsoBI	CYCGRG	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	78, 1518
Bsp143I	GATC	6 cut(s)	7, 22, 244, 819, 1330, 1642
BspACI	CCGC	7 cut(s)	59, 147, 452, 563, 1070, 1538, 1571
BspANI	GGCC	2 cut(s)	340, 509
BspCNI	CTCAG	5 cut(s)	202, 292, 379, 829, 1012
BspLI	GGNNCC	6 cut(s)	9, 678, 765, 1056, 1266, 1644
BspMAI	CTGCAG	1 cut(s)	1216
BspMI	ACCTGC	1 cut(s)	1422
BspPI	GGATC	5 cut(s)	2, 15, 252, 1637, 1650
BspT107I	GGYRCC	2 cut(s)	763, 1054
BsrDI	GCAATG	1 cut(s)	559
BsrI	ACTGG	4 cut(s)	314, 612, 1544, 1577
BssECI	CCNNGG	3 cut(s)	680, 1268, 1634
BssMI	GATC	6 cut(s)	7, 22, 244, 819, 1330, 1642
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	1268, 1634
Bst2UI	CCWGG	3 cut(s)	681, 1219, 1620
Bst4CI	ACNGT	5 cut(s)	254, 347, 996, 1365, 1376
BstACI	GRCGYC	1 cut(s)	285
BstAPI	GCANNNNNTGC	3 cut(s)	803, 1546, 1579
BstBAI	YACGTR	1 cut(s)	1595
BstC8I	GCNNGC	1 cut(s)	901
BstDEI	CTNAG	6 cut(s)	189, 300, 387, 816, 977, 1020
BstF5I	GGATG	8 cut(s)	25, 358, 990, 1309, 1445, 1516, 1540, 1573
BstHHI	GCGC	3 cut(s)	69, 1371, 1602
BstKTI	GATC	6 cut(s)	10, 25, 247, 822, 1333, 1645
BstMAI	GTCTC	3 cut(s)	24, 318, 857
BstMBI	GATC	6 cut(s)	7, 22, 244, 819, 1330, 1642
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 73, 146, 155, 803, 1546, 1579
BstNI	CCWGG	3 cut(s)	681, 1219, 1620
BstNSI	RCATGY	3 cut(s)	907, 962, 1494
BstSCI	CCNGG	3 cut(s)	679, 1217, 1618
BstSFI	CTRYAG	2 cut(s)	807, 1212
BstV2I	GAAGAC	3 cut(s)	45, 245, 357
BstX2I	RGATCY	3 cut(s)	7, 244, 1642
BstYI	RGATCY	3 cut(s)	7, 244, 1642
Bsu36I	CCTNAGG	2 cut(s)	189, 300
BsuRI	GGCC	2 cut(s)	340, 509
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	8 cut(s)	25, 358, 990, 1309, 1445, 1516, 1540, 1573
BtsIMutI	CAGTG	5 cut(s)	605, 1001, 1370, 1551, 1584
BveI	ACCTGC	1 cut(s)	1422
Cac8I	GCNNGC	1 cut(s)	901
CfoI	GCGC	3 cut(s)	69, 1371, 1602
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	6 cut(s)	196, 319, 343, 348, 1297, 1592
CspCI	CAANNNNNGTGG	2 cut(s)	1409, 1444
CviQI	GTAC	6 cut(s)	196, 319, 343, 348, 1297, 1592
DdeI	CTNAG	6 cut(s)	189, 300, 387, 816, 977, 1020
DpnI	GATC	6 cut(s)	9, 24, 246, 821, 1332, 1644
DpnII	GATC	6 cut(s)	7, 22, 244, 819, 1330, 1642
DraI	TTTAAA	1 cut(s)	790
DraIII	CACNNNGTG	1 cut(s)	770
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	1268, 1634
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	2 cut(s)	257, 1224
Eco81I	CCTNAGG	2 cut(s)	189, 300
Eco88I	CYCGRG	1 cut(s)	484
EcoICRI	GAGCTC	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	1342
EcoRII	CCWGG	3 cut(s)	679, 1217, 1618
EcoT14I	CCWWGG	2 cut(s)	1268, 1634
EcoT22I	ATGCAT	1 cut(s)	1229
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	2 cut(s)	1268, 1634
Esp3I	CGTCTC	2 cut(s)	24, 318
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FbaI	TGATCA	1 cut(s)	22
FokI	GGATG	8 cut(s)	32, 365, 997, 1296, 1452, 1523, 1527, 1560
FriOI	GRGCYC	1 cut(s)	78
FspBI	CTAG	3 cut(s)	95, 521, 768
GlaI	GCGC	3 cut(s)	68, 1370, 1601
GsuI	CTGGAG	2 cut(s)	153, 331
HaeIII	GGCC	2 cut(s)	340, 509
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	3 cut(s)	69, 1371, 1602
Hin1I	GRCGYC	1 cut(s)	285
Hin6I	GCGC	3 cut(s)	67, 1369, 1600
HinP1I	GCGC	3 cut(s)	67, 1369, 1600
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	7 cut(s)	98, 259, 517, 740, 1094, 1119, 1208
HphI	GGTGA	4 cut(s)	136, 238, 616, 1036
Hpy166II	GTNNAC	1 cut(s)	1001
Hpy188I	TCNGA	5 cut(s)	103, 258, 498, 819, 1021
Hpy188III	TCNNGA	7 cut(s)	170, 191, 248, 263, 436, 521, 1658
Hpy8I	GTNNAC	1 cut(s)	1001
Hpy99I	CGWCG	3 cut(s)	258, 287, 364
HpyAV	CCTTC	5 cut(s)	127, 439, 578, 762, 1403
HpyCH4III	ACNGT	5 cut(s)	254, 347, 996, 1365, 1376
HpyCH4IV	ACGT	4 cut(s)	174, 285, 1194, 1594
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 73, 146, 155, 803, 1546, 1579
HpyF3I	CTNAG	6 cut(s)	189, 300, 387, 816, 977, 1020
HpySE526I	ACGT	4 cut(s)	174, 285, 1194, 1594
Hsp92I	GRCGYC	1 cut(s)	285
HspAI	GCGC	3 cut(s)	67, 1369, 1600
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	6 cut(s)	7, 22, 244, 819, 1330, 1642
LmnI	GCTCC	4 cut(s)	61, 312, 565, 1463
LweI	GCATC	3 cut(s)	793, 1549, 1582
MaeI	CTAG	3 cut(s)	95, 521, 768
MaeII	ACGT	4 cut(s)	174, 285, 1194, 1594
MaeIII	GTNAC	5 cut(s)	290, 479, 661, 1108, 1415
MalI	GATC	6 cut(s)	9, 24, 246, 821, 1332, 1644
MboI	GATC	6 cut(s)	7, 22, 244, 819, 1330, 1642
MflI	RGATCY	3 cut(s)	7, 244, 1642
MhlI	GDGCHC	2 cut(s)	78, 1518
MluCI	AATT	6 cut(s)	734, 774, 791, 1015, 1046, 1342
MlyI	GAGTC	2 cut(s)	92, 1128
MmeI	TCCRAC	2 cut(s)	126, 236
Mph1103I	ATGCAT	1 cut(s)	1229
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	4 cut(s)	591, 777, 789, 1151
MspA1I	CMGCKG	1 cut(s)	825
MspR9I	CCNGG	3 cut(s)	681, 1219, 1620
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	3 cut(s)	681, 1219, 1620
MwoI	GCNNNNNNNGC	7 cut(s)	56, 73, 146, 155, 803, 1546, 1579
NdeII	GATC	6 cut(s)	7, 22, 244, 819, 1330, 1642
NlaIV	GGNNCC	6 cut(s)	9, 678, 765, 1056, 1266, 1644
NmuCI	GTSAC	2 cut(s)	290, 479
NsiI	ATGCAT	1 cut(s)	1229
NspI	RCATGY	3 cut(s)	907, 962, 1494
PaqCI	CACCTGC	1 cut(s)	1422
PciI	ACATGT	2 cut(s)	958, 1490
PcsI	WCGNNNNNNNCGW	4 cut(s)	204, 213, 282, 356
PctI	GAATGC	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	5 cut(s)	259, 517, 740, 1094, 1208
PleI	GAGTC	2 cut(s)	92, 1127
PpsI	GAGTC	2 cut(s)	92, 1127
Ppu21I	YACGTR	1 cut(s)	1595
PscI	ACATGT	2 cut(s)	958, 1490
PsiI	TTATAA	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	3 cut(s)	679, 1217, 1618
PspGI	CCWGG	3 cut(s)	679, 1217, 1618
PspN4I	GGNNCC	6 cut(s)	9, 678, 765, 1056, 1266, 1644
PspPI	GGNCC	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	1216
PsuI	RGATCY	3 cut(s)	7, 244, 1642
PvuII	CAGCTG	1 cut(s)	825
RsaI	GTAC	6 cut(s)	197, 320, 344, 349, 1298, 1593
RsaNI	GTAC	6 cut(s)	196, 319, 343, 348, 1297, 1592
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	4 cut(s)	591, 777, 789, 1151
Sau3AI	GATC	6 cut(s)	7, 22, 244, 819, 1330, 1642
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	92, 1128
ScrFI	CCNGG	3 cut(s)	681, 1219, 1620
SduI	GDGCHC	2 cut(s)	78, 1518
SfaNI	GCATC	3 cut(s)	793, 1549, 1582
SfcI	CTRYAG	2 cut(s)	807, 1212
SinI	GGWCC	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	6 cut(s)	734, 774, 791, 1015, 1046, 1342
SsiI	CCGC	7 cut(s)	59, 147, 452, 563, 1070, 1538, 1571
SspI	AATATT	1 cut(s)	1030
SspMI	CTAG	3 cut(s)	95, 521, 768
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	679, 1217, 1618
StyI	CCWWGG	2 cut(s)	1268, 1634
TaaI	ACNGT	5 cut(s)	254, 347, 996, 1365, 1376
TaiI	ACGT	4 cut(s)	177, 288, 1197, 1597
TaqI	TCGA	4 cut(s)	108, 249, 282, 504
TasI	AATT	6 cut(s)	734, 774, 791, 1015, 1046, 1342
TatI	WGTACW	1 cut(s)	1296
TauI	GCSGC	2 cut(s)	1540, 1573
TfiI	GAWTC	5 cut(s)	259, 517, 740, 1094, 1208
Tru1I	TTAA	4 cut(s)	591, 777, 789, 1151
Tru9I	TTAA	4 cut(s)	591, 777, 789, 1151
TscAI	CASTG	5 cut(s)	612, 1001, 1370, 1551, 1584
TseFI	GTSAC	2 cut(s)	290, 479
Tsp45I	GTSAC	2 cut(s)	290, 479
TspDTI	ATGAA	8 cut(s)	146, 348, 622, 1020, 1056, 1244, 1335, 1641
TspGWI	ACGGA	4 cut(s)	257, 278, 336, 365
TspRI	CASTG	5 cut(s)	612, 1001, 1370, 1551, 1584
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	3 cut(s)	734, 791, 1342
XbaI	TCTAGA	1 cut(s)	520
XceI	RCATGY	3 cut(s)	907, 962, 1494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1654
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	3 cut(s)	95, 521, 768
ZraI	GACGTC	1 cut(s)	286
Zsp2I	ATGCAT	1 cut(s)	1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.