Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

65964238 .. 65966748

Gene Structure 2511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G037490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGGAAACCCCAACGGAGCAAACCGACGTCCACGTCATCCTCTCGGAGCAGCGCAGGGAGCTCTTGGCGGCCAAAACCCTAGACGCCGACCTCGACTTGGCCTTCAATCTCCAAATGCAAGAAGCCATGACCGCCTCTCTGGCGCTCAATCCATCACCGAGTACTTCGCAGTCTCCTCCTCCGTCGCTGCGGTACGAGCCAAACGACGACGACGTGGAGAGGTTCTCGCAGGAGTACGAGGACCACGAGCGCAGCGTTTTGGAGGCGAGGAAGGCGAAGGAGGACCTGGACCGTCGGATTCACGACCACAAGTTCGCGATCGACGTCAGTGACTTGCCGGAGGAATACTGGAGGAATCACGGGGACGTGTACGAACGGCCGTTCTGTACGGATGGGGCGTCGTCGTCGTCGGGAAAAGCTGCGGCGGAGACAGAGTGTTTGAGATTGTACTGCAAGGGTTTGATTAGTGAAGAGTTGGTGAAGAATGTGAAAATGGCGGTGGGTGGAATTGGGGTTGCGATTTGTGACCCTAGAGATAATCTGGTTTTCGAGGTGAAGAAGAATATGGAGGCGGTGGTTGAGGGTGAGAGACTGAGCGATGAGGCCGCGGAGCTTGAGGCTCTGGTTGAAGGGCTTAATAAAGCTCTTACTATGGACTTGAAGAATGTCACATTTTTCTGTGATGATAACAAGCTTTACCAATATTTTACAAACAGAGTGGTTCCTGGAAACAGCAAAATTGCAACACTAGTCAACCAAGTTGCTCTTCTACAAAAAGAATTTGAATCCTGCAGCCCTTCACTTGTGGCACGTGGTGATATTAAGTTTGCATTTAAATTTGCAAGAGAGGCTATAGTTTCCCAGATCACCTGGCAAGCAGAAACAAGCAATGGCAAGTGTTTGAAGGAGACTTGTGTCATATGTTATGAAGAAACTGATGTTGCTCGAATGTTTTCAATCGATGGTTGTCTGCACAGGTATTGCATTTCTTGTATGAAACAGCACGTGGAAGTAAGGTTGCTTAATGGGATGGTGGCGCATTGTCCTCATGAAGGCTGCAAATCCGAAGTGAATATTGATAGCTATGAGAATTTCTTCTTGGCACCTAAACTAGTTGAGGTTATGAACCAACGAATCAAGGAGTCTTCTATTCATGTTACAGACAGAGTCTATTGCCAATATCCCAAGTGTTCTGCATTAATGTCCAAGAAGGAGATCTTAGAATACACAAAAACTTCTTATGTTGGTGCGGAGGAATCTGGAGCCAGAAAATGCATGAAATGCCACTACTATTTTTGTATCAAGTGCTTGGTTCCTTGGCATTTTGAATTGACCTGTGATGAGTACCAAACGTCACACAATTTCCCTAAAGAACATCAAATGCTGAAGTCACTGGCTACAAAGAGACTCTGGCGGCAGTGTGTTAAGTGCAACCACATGGTTGAACTTGCACAAGGTTGTTACCACATTACTTGCAGATGTGGATATCAGTTTTGCTACACTTGTGGAGCTGAATGGAAGGACAAGAAACCTTGTTCCTGCCCACTCTGGGACGAGCAGTACATACTTGCAACACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

526

Amino Acids

60.08

Weight (kDa)

5.5

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	165 - 284	6.4e-20	Reverse transcriptase-like
IBR	PF01485	385 - 446	4.2e-09	IBR domain, a half RING-finger domain
IBR	PF01485	462 - 512	7.2e-07	IBR domain, a half RING-finger domain
Rcat_RNF216	PF26200	463 - 507	6.3e-06	RNF216 Rcat domain
IBR_1	PF22191	473 - 510	8.6e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AatII	GACGTC	2 cut(s)	30, 327
AccB1I	GGYRCC	1 cut(s)	1102
AccII	CGCG	2 cut(s)	317, 608
AcoI	YGGCCR	2 cut(s)	69, 377
AcsI	RAATTY	3 cut(s)	779, 836, 1090
AcuI	CTGAAG	1 cut(s)	1406
AcvI	CACGTG	2 cut(s)	812, 1006
AcyI	GRCGYC	4 cut(s)	27, 84, 324, 398
AdeI	CACNNNGTG	1 cut(s)	815
AfaI	GTAC	8 cut(s)	163, 194, 236, 371, 388, 449, 1346, 1562
AfiI	CCNNNNNNNGG	3 cut(s)	97, 1052, 1549
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	8 cut(s)	106, 629, 661, 785, 904, 957, 1328, 1445
AhlI	ACTAGT	2 cut(s)	748, 1111
AjiI	CACGTC	3 cut(s)	34, 214, 367
AjnI	CCWGG	3 cut(s)	285, 724, 869
AjuI	GAANNNNNNNTTGG	4 cut(s)	750, 782, 1082, 1114
AluBI	AGCT	7 cut(s)	61, 419, 613, 644, 694, 1083, 1511
AluI	AGCT	7 cut(s)	61, 419, 613, 644, 694, 1083, 1511
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	5 cut(s)	177, 422, 583, 902, 1399
AoxI	GGCC	4 cut(s)	69, 99, 377, 603
ApeKI	GCWGC	6 cut(s)	49, 187, 252, 419, 792, 1056
ApoI	RAATTY	3 cut(s)	779, 836, 1090
ArsI	GACNNNNNNTTYG	4 cut(s)	296, 328, 421, 453
AseI	ATTAAT	1 cut(s)	1199
Asp700I	GAANNNNTTC	2 cut(s)	952, 1094
AspLEI	GCGC	4 cut(s)	54, 145, 252, 1039
AspS9I	GGNCC	3 cut(s)	241, 283, 289
AsuHPI	GGTGA	6 cut(s)	147, 490, 565, 596, 827, 859
AvaII	GGWCC	3 cut(s)	241, 283, 289
BanI	GGYRCC	1 cut(s)	1102
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	245
BbrPI	CACGTG	2 cut(s)	812, 1006
BbsI	GAAGAC	1 cut(s)	1137
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	6 cut(s)	61, 174, 264, 406, 804, 1043
BccI	CCATC	4 cut(s)	160, 386, 956, 1024
BceAI	ACGGC	2 cut(s)	364, 392
BciT130I	CCWGG	3 cut(s)	287, 726, 871
BcoDI	GTCTC	5 cut(s)	177, 422, 583, 902, 1399
BcuI	ACTAGT	2 cut(s)	748, 1111
BfaI	CTAG	4 cut(s)	80, 531, 749, 1112
BfmI	CTRYAG	2 cut(s)	790, 852
BfoI	RGCGCY	1 cut(s)	146
BglI	GCCNNNNNGGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	1215
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	3 cut(s)	287, 726, 871
Bme18I	GGWCC	3 cut(s)	241, 283, 289
BmgBI	CACGTC	3 cut(s)	34, 214, 367
BmgT120I	GGNCC	3 cut(s)	241, 283, 289
BmiI	GGNNCC	4 cut(s)	723, 1104, 1264, 1314
BmrFI	CCNGG	3 cut(s)	287, 726, 871
BoxI	GACNNNNGTC	1 cut(s)	914
BpiI	GAAGAC	1 cut(s)	1137
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	2 cut(s)	370, 1281
BpuEI	CTTGAG	1 cut(s)	635
Bsa29I	ATCGAT	1 cut(s)	960
BsaAI	YACGTR	2 cut(s)	812, 1006
BsaHI	GRCGYC	4 cut(s)	27, 84, 324, 398
BsaJI	CCNNGG	2 cut(s)	606, 1316
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 1052, 1549
Bse1I	ACTGG	2 cut(s)	353, 1398
Bse3DI	GCAATG	1 cut(s)	895
BseBI	CCWGG	3 cut(s)	287, 726, 871
BseCI	ATCGAT	1 cut(s)	960
BseDI	CCNNGG	2 cut(s)	606, 1316
BseGI	GGATG	3 cut(s)	36, 397, 1035
BseLI	CCNNNNNNNGG	3 cut(s)	97, 1052, 1549
BseMI	GCAATG	1 cut(s)	895
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	2 cut(s)	353, 1398
BseRI	GAGGAG	2 cut(s)	165, 168
BseX3I	CGGCCG	1 cut(s)	377
BseXI	GCAGC	6 cut(s)	61, 174, 264, 406, 804, 1043
BsgI	GTGCAG	1 cut(s)	956
Bsh1236I	CGCG	2 cut(s)	317, 608
Bsh1285I	CGRYCG	2 cut(s)	321, 380
BshFI	GGCC	4 cut(s)	71, 101, 379, 605
BshNI	GGYRCC	1 cut(s)	1102
BshVI	ATCGAT	1 cut(s)	960
BsiEI	CGRYCG	2 cut(s)	321, 380
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	338
BslFI	GGGAC	2 cut(s)	377, 1565
BslI	CCNNNNNNNGG	3 cut(s)	97, 1052, 1549
BsmAI	GTCTC	5 cut(s)	177, 422, 583, 902, 1399
BsmFI	GGGAC	2 cut(s)	377, 1565
BsnI	GGCC	4 cut(s)	71, 101, 379, 605
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	318, 864, 1215
Bsp68I	TCGCGA	1 cut(s)	317
BspANI	GGCC	4 cut(s)	71, 101, 379, 605
BspCNI	CTCAG	1 cut(s)	585
BspDI	ATCGAT	1 cut(s)	960
BspFNI	CGCG	2 cut(s)	317, 608
BspHI	TCATGA	1 cut(s)	1048
BspLI	GGNNCC	4 cut(s)	723, 1104, 1264, 1314
BspMAI	CTGCAG	1 cut(s)	794
BspQI	GCTCTTC	1 cut(s)	771
BspT107I	GGYRCC	1 cut(s)	1102
BsrDI	GCAATG	1 cut(s)	895
BsrI	ACTGG	2 cut(s)	353, 1398
BssECI	CCNNGG	2 cut(s)	606, 1316
BssMI	GATC	3 cut(s)	318, 864, 1215
BssNI	GRCGYC	4 cut(s)	27, 84, 324, 398
BssSI	CACGAG	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	1316
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	3 cut(s)	287, 726, 871
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	2 cut(s)	465, 771
BstACI	GRCGYC	4 cut(s)	27, 84, 324, 398
BstAPI	GCANNNNNTGC	1 cut(s)	1281
BstBAI	YACGTR	2 cut(s)	812, 1006
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	2 cut(s)	593, 1219
BstDSI	CCRYGG	1 cut(s)	606
BstENI	CCTNNNNNAGG	1 cut(s)	1050
BstF5I	GGATG	3 cut(s)	36, 397, 1035
BstFNI	CGCG	2 cut(s)	317, 608
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	4 cut(s)	54, 145, 252, 1039
BstKTI	GATC	3 cut(s)	321, 867, 1218
BstMAI	GTCTC	5 cut(s)	177, 422, 583, 902, 1399
BstMBI	GATC	3 cut(s)	318, 864, 1215
BstMCI	CGRYCG	2 cut(s)	321, 380
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 131, 140, 196, 272, 848, 1281
BstNI	CCWGG	3 cut(s)	287, 726, 871
BstPAI	GACNNNNGTC	1 cut(s)	914
BstSCI	CCNGG	3 cut(s)	285, 724, 869
BstSFI	CTRYAG	2 cut(s)	790, 852
BstUI	CGCG	2 cut(s)	317, 608
BstV1I	GCAGC	6 cut(s)	61, 174, 264, 406, 804, 1043
BstV2I	GAAGAC	1 cut(s)	1137
BstX2I	RGATCY	1 cut(s)	1215
BstYI	RGATCY	1 cut(s)	1215
BstZI	CGGCCG	1 cut(s)	377
Bsu15I	ATCGAT	1 cut(s)	960
BsuRI	GGCC	4 cut(s)	71, 101, 379, 605
BsuTUI	ATCGAT	1 cut(s)	960
BtgI	CCRYGG	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	612
BtrI	CACGTC	3 cut(s)	34, 214, 367
BtsCI	GGATG	3 cut(s)	36, 397, 1035
BtsI	GCAGTG	1 cut(s)	1424
BtsIMutI	CAGTG	3 cut(s)	334, 1391, 1424
BtuMI	TCGCGA	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	876
CciI	TCATGA	1 cut(s)	1048
CfoI	GCGC	4 cut(s)	54, 145, 252, 1039
Cfr13I	GGNCC	3 cut(s)	241, 283, 289
Cfr42I	CCGCGG	1 cut(s)	609
ClaI	ATCGAT	1 cut(s)	960
CseI	GACGC	2 cut(s)	92, 387
Csp6I	GTAC	8 cut(s)	162, 193, 235, 370, 387, 448, 1345, 1561
CspCI	CAANNNNNGTGG	4 cut(s)	699, 734, 1454, 1489
CviAII	CATG	5 cut(s)	127, 1049, 1154, 1276, 1438
CviQI	GTAC	8 cut(s)	162, 193, 235, 370, 387, 448, 1345, 1561
DdeI	CTNAG	2 cut(s)	593, 1219
DpnI	GATC	3 cut(s)	320, 866, 1217
DpnII	GATC	3 cut(s)	318, 864, 1215
DraI	TTTAAA	1 cut(s)	835
DraIII	CACNNNGTG	1 cut(s)	815
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	2 cut(s)	69, 377
EagI	CGGCCG	1 cut(s)	377
Eam1104I	CTCTTC	2 cut(s)	465, 771
EarI	CTCTTC	2 cut(s)	465, 771
EciI	GGCGGA	1 cut(s)	440
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	1316
Eco24I	GRGCYC	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	1487
Eco47I	GGWCC	3 cut(s)	241, 283, 289
Eco52I	CGGCCG	1 cut(s)	377
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	1406
Eco72I	CACGTG	2 cut(s)	812, 1006
EcoICRI	GAGCTC	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	1050
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	3 cut(s)	285, 724, 869
EcoRV	GATATC	1 cut(s)	1487
EcoT14I	CCWWGG	1 cut(s)	1316
EcoT22I	ATGCAT	1 cut(s)	1277
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	1316
FaeI	CATG	5 cut(s)	130, 1052, 1157, 1279, 1441
FalI	AAGNNNNNCTT	4 cut(s)	750, 782, 1202, 1234
FaqI	GGGAC	2 cut(s)	377, 1565
FatI	CATG	5 cut(s)	126, 1048, 1153, 1275, 1437
FauNDI	CATATG	1 cut(s)	920
FokI	GGATG	3 cut(s)	23, 404, 1042
FriOI	GRGCYC	1 cut(s)	63
FspBI	CTAG	4 cut(s)	80, 531, 749, 1112
GlaI	GCGC	4 cut(s)	53, 144, 251, 1038
GsuI	CTGGAG	2 cut(s)	370, 1281
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	4 cut(s)	71, 101, 379, 605
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	2 cut(s)	92, 387
HhaI	GCGC	4 cut(s)	54, 145, 252, 1039
Hin1I	GRCGYC	4 cut(s)	27, 84, 324, 398
Hin1II	CATG	5 cut(s)	130, 1052, 1157, 1279, 1441
Hin6I	GCGC	4 cut(s)	52, 143, 250, 1037
HinP1I	GCGC	4 cut(s)	52, 143, 250, 1037
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	8 cut(s)	298, 355, 785, 1134, 1142, 1167, 1256, 1407
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	6 cut(s)	147, 490, 565, 596, 827, 859
Hpy166II	GTNNAC	3 cut(s)	31, 370, 754
Hpy188I	TCNGA	3 cut(s)	46, 297, 1066
Hpy188III	TCNNGA	5 cut(s)	302, 316, 411, 1049, 1260
Hpy8I	GTNNAC	3 cut(s)	31, 370, 754
HpyAV	CCTTC	9 cut(s)	112, 265, 271, 623, 807, 898, 1046, 1204, 1513
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	8 cut(s)	27, 33, 213, 324, 366, 811, 1005, 1352
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 131, 140, 196, 272, 848, 1281
HpyF3I	CTNAG	2 cut(s)	593, 1219
HpySE526I	ACGT	8 cut(s)	27, 33, 213, 324, 366, 811, 1005, 1352
Hsp92I	GRCGYC	4 cut(s)	27, 84, 324, 398
Hsp92II	CATG	5 cut(s)	130, 1052, 1157, 1279, 1441
HspAI	GCGC	4 cut(s)	52, 143, 250, 1037
KspI	CCGCGG	1 cut(s)	609
Kzo9I	GATC	3 cut(s)	318, 864, 1215
LguI	GCTCTTC	1 cut(s)	771
LmnI	GCTCC	6 cut(s)	16, 46, 58, 610, 1262, 1508
Lsp1109I	GCAGC	6 cut(s)	61, 174, 264, 406, 804, 1043
MaeI	CTAG	4 cut(s)	80, 531, 749, 1112
MaeII	ACGT	8 cut(s)	27, 33, 213, 324, 366, 811, 1005, 1352
MaeIII	GTNAC	7 cut(s)	329, 524, 667, 1156, 1353, 1389, 1460
MalI	GATC	3 cut(s)	320, 866, 1217
MboI	GATC	3 cut(s)	318, 864, 1215
MboII	GAAGA	9 cut(s)	482, 493, 568, 571, 673, 758, 941, 1087, 1137
MflI	RGATCY	1 cut(s)	1215
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	7 cut(s)	507, 738, 779, 836, 1090, 1328, 1360
MlyI	GAGTC	3 cut(s)	1151, 1176, 1401
MmeI	TCCRAC	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	1277
MroXI	GAANNNNTTC	2 cut(s)	952, 1094
MseI	TTAA	6 cut(s)	636, 822, 834, 1023, 1199, 1425
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	3 cut(s)	287, 726, 871
MvaI	CCWGG	3 cut(s)	287, 726, 871
MvnI	CGCG	2 cut(s)	317, 608
MwoI	GCNNNNNNNGC	7 cut(s)	58, 131, 140, 196, 272, 848, 1281
NdeI	CATATG	1 cut(s)	920
NdeII	GATC	3 cut(s)	318, 864, 1215
NlaIII	CATG	5 cut(s)	130, 1052, 1157, 1279, 1441
NlaIV	GGNNCC	4 cut(s)	723, 1104, 1264, 1314
NmuCI	GTSAC	5 cut(s)	329, 524, 667, 1353, 1389
NruI	TCGCGA	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	1277
PagI	TCATGA	1 cut(s)	1048
PciSI	GCTCTTC	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	7 cut(s)	90, 201, 210, 243, 252, 321, 395
PdmI	GAANNNNTTC	2 cut(s)	952, 1094
PfeI	GAWTC	5 cut(s)	298, 355, 785, 1134, 1256
PflFI	GACNNNGTC	1 cut(s)	1166
PfoI	TCCNGGA	1 cut(s)	724
Ple19I	CGATCG	1 cut(s)	321
PleI	GAGTC	3 cut(s)	1150, 1175, 1401
PmaCI	CACGTG	2 cut(s)	812, 1006
PmlI	CACGTG	2 cut(s)	812, 1006
PpsI	GAGTC	3 cut(s)	1150, 1175, 1401
Ppu21I	YACGTR	2 cut(s)	812, 1006
PpuMI	RGGWCCY	1 cut(s)	283
PshAI	GACNNNNGTC	1 cut(s)	914
PshBI	ATTAAT	1 cut(s)	1199
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	3 cut(s)	285, 724, 869
PspCI	CACGTG	2 cut(s)	812, 1006
PspGI	CCWGG	3 cut(s)	285, 724, 869
PspN4I	GGNNCC	4 cut(s)	723, 1104, 1264, 1314
PspPI	GGNCC	3 cut(s)	241, 283, 289
PspPPI	RGGWCCY	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	1215
PsyI	GACNNNGTC	1 cut(s)	1166
PvuI	CGATCG	1 cut(s)	321
RruI	TCGCGA	1 cut(s)	317
RsaI	GTAC	8 cut(s)	163, 194, 236, 371, 388, 449, 1346, 1562
RsaNI	GTAC	8 cut(s)	162, 193, 235, 370, 387, 448, 1345, 1561
SacI	GAGCTC	1 cut(s)	63
SacII	CCGCGG	1 cut(s)	609
SapI	GCTCTTC	1 cut(s)	771
SaqAI	TTAA	6 cut(s)	636, 822, 834, 1023, 1199, 1425
Sau3AI	GATC	3 cut(s)	318, 864, 1215
Sau96I	GGNCC	3 cut(s)	241, 283, 289
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	3 cut(s)	1151, 1176, 1401
ScrFI	CCNGG	3 cut(s)	287, 726, 871
SduI	GDGCHC	1 cut(s)	63
SfcI	CTRYAG	2 cut(s)	790, 852
Sfr303I	CCGCGG	1 cut(s)	609
SgrBI	CCGCGG	1 cut(s)	609
SinI	GGWCC	3 cut(s)	241, 283, 289
SmiI	ATTTAAAT	1 cut(s)	835
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SpeI	ACTAGT	2 cut(s)	748, 1111
Sse9I	AATT	7 cut(s)	507, 738, 779, 836, 1090, 1328, 1360
SspI	AATATT	2 cut(s)	704, 1075
SspMI	CTAG	4 cut(s)	80, 531, 749, 1112
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	3 cut(s)	285, 724, 869
StyI	CCWWGG	1 cut(s)	1316
SwaI	ATTTAAAT	1 cut(s)	835
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	8 cut(s)	30, 36, 216, 327, 369, 814, 1008, 1355
TaqI	TCGA	5 cut(s)	93, 321, 549, 946, 960
TasI	AATT	7 cut(s)	507, 738, 779, 836, 1090, 1328, 1360
TatI	WGTACW	3 cut(s)	161, 447, 1560
TauI	GCSGC	4 cut(s)	71, 425, 608, 1417
TfiI	GAWTC	5 cut(s)	298, 355, 785, 1134, 1256
Tru1I	TTAA	6 cut(s)	636, 822, 834, 1023, 1199, 1425
Tru9I	TTAA	6 cut(s)	636, 822, 834, 1023, 1199, 1425
TscAI	CASTG	3 cut(s)	334, 1398, 1424
TseFI	GTSAC	5 cut(s)	329, 524, 667, 1353, 1389
TseI	GCWGC	6 cut(s)	49, 187, 252, 419, 792, 1056
Tsp45I	GTSAC	5 cut(s)	329, 524, 667, 1353, 1389
TspDTI	ATGAA	6 cut(s)	942, 1010, 1065, 1139, 1142, 1292
TspGWI	ACGGA	3 cut(s)	29, 171, 404
TspRI	CASTG	3 cut(s)	334, 1398, 1424
Tth111I	GACNNNGTC	1 cut(s)	1166
VpaK11BI	GGWCC	3 cut(s)	241, 283, 289
VspI	ATTAAT	1 cut(s)	1199
XagI	CCTNNNNNAGG	1 cut(s)	1050
XapI	RAATTY	3 cut(s)	779, 836, 1090
XmnI	GAANNNNTTC	2 cut(s)	952, 1094
XspI	CTAG	4 cut(s)	80, 531, 749, 1112
ZraI	GACGTC	2 cut(s)	28, 325
ZrmI	AGTACT	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	1277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.