Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024212.1

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1859

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024212.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

gttacctacaaagtgcatcctgaaaactttaagattacgacattagtcactcaagttgctcttctacaaagaaaatttgaacattgcactccttctcttgtggaacctagtgccattaagtttccattccaatttgcaagagaggctatagtttctcagatcacctggacagctagtaatggcaagagattcaatgagacttgtgtcatttgttttgaagaaacagatgttactagaatgttttcaattgaaggctgtcttcacaggtattgctgtaattgtatgaaacagcatattgaagcaaagttgcttaatgggagcatggtgcagtgtcctcatgaaggctgtgagtctgaagtgagtattgatagctgtgaaacattcttggagcctaaacttgttcaggtcatgcgccaacgaatcaaggaatcttctattcctgttacagagaaagtttactgtccagatcccaagtgttctgcattgatgtcaaaaaatgatgtcttggaatatactaagaattattttgttgctgttgaacaatctggtgtcaggttatgcatggaatgtcatcgctgtttttgtatcaattgcaaagttccattcgacaatcatacctgctatgactacaagaaatcaaatccttctgcagaagagcaattggtgaagtcactggctaaaaagaagcactggcgccagtgtgtgaactgcagccatatggttgaacttgcagaaggttgttaccacataacttgcagatgtggatatgagttttgctatacttgtggagctgaatggaaggacaagacaccaacatgttcctgcccaatctgggatgagtgcaacattatacgagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

286

Amino Acids

32.99

Weight (kDa)

6.82

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	693
AclWI	GGATC	1 cut(s)	461
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	375
AcyI	GRCGYC	1 cut(s)	694
AfiI	CCNNNNNNNGG	2 cut(s)	341, 832
AflIII	ACRYGT	1 cut(s)	815
AgsI	TTSAA	8 cut(s)	80, 193, 218, 246, 251, 299, 539, 725
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	3 cut(s)	173, 372, 791
AluI	AGCT	3 cut(s)	173, 372, 791
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	461
ApeKI	GCWGC	1 cut(s)	711
ApoI	RAATTY	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	241
AspLEI	GCGC	2 cut(s)	414, 696
AsuHPI	GGTGA	2 cut(s)	154, 676
BanI	GGYRCC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	723
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	3 cut(s)	108, 174, 234
BfmI	CTRYAG	3 cut(s)	147, 648, 709
BfoI	RGCGCY	1 cut(s)	697
BfuAI	ACCTGC	1 cut(s)	626
BisI	GCNGC	1 cut(s)	712
BlsI	GCNGC	1 cut(s)	713
Bme1390I	CCNGG	1 cut(s)	166
BmiI	GGNNCC	3 cut(s)	105, 390, 695
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	25
BoxI	GACNNNNGTC	2 cut(s)	44, 203
BpiI	GAAGAC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 832
Bse1I	ACTGG	3 cut(s)	678, 695, 697
Bse3DI	GCAATG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	16, 841
BseLI	CCNNNNNNNGG	2 cut(s)	341, 832
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	3 cut(s)	678, 695, 697
BseXI	GCAGC	1 cut(s)	723
BsgI	GTGCAG	1 cut(s)	347
BshNI	GGYRCC	1 cut(s)	693
BslI	CCNNNNNNNGG	2 cut(s)	341, 832
BsmAI	GTCTC	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	159, 466
BspCNI	CTCAG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	3 cut(s)	105, 390, 695
BspMAI	CTGCAG	2 cut(s)	652, 713
BspMI	ACCTGC	1 cut(s)	626
BspPI	GGATC	1 cut(s)	461
BspQI	GCTCTTC	2 cut(s)	66, 648
BspT107I	GGYRCC	1 cut(s)	693
BsrDI	GCAATG	1 cut(s)	82
BsrI	ACTGG	3 cut(s)	678, 695, 697
BssMI	GATC	2 cut(s)	159, 466
BssNI	GRCGYC	1 cut(s)	694
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	2 cut(s)	66, 648
BstACI	GRCGYC	1 cut(s)	694
BstDEI	CTNAG	2 cut(s)	156, 516
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	16, 841
BstH2I	RGCGCY	1 cut(s)	697
BstHHI	GCGC	2 cut(s)	414, 696
BstKTI	GATC	2 cut(s)	162, 469
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	2 cut(s)	159, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	819
BstPAI	GACNNNNGTC	2 cut(s)	44, 203
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	3 cut(s)	147, 648, 709
BstV1I	GCAGC	1 cut(s)	723
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BtgZI	GCGATG	1 cut(s)	557
BtsCI	GGATG	2 cut(s)	16, 841
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	4 cut(s)	335, 671, 688, 704
BveI	ACCTGC	1 cut(s)	626
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	2 cut(s)	414, 696
CspCI	CAANNNNNGTGG	2 cut(s)	734, 769
CviAII	CATG	5 cut(s)	322, 338, 409, 562, 816
CviJI	RGCY	9 cut(s)	146, 173, 255, 345, 372, 391, 677, 714, 791
CviKI_1	RGCY	9 cut(s)	146, 173, 255, 345, 372, 391, 677, 714, 791
DdeI	CTNAG	2 cut(s)	156, 516
DinI	GGCGCC	1 cut(s)	695
DpnI	GATC	2 cut(s)	161, 468
DpnII	GATC	2 cut(s)	159, 466
Eam1104I	CTCTTC	2 cut(s)	66, 648
EarI	CTCTTC	2 cut(s)	66, 648
Eco57I	CTGAAG	1 cut(s)	375
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoRII	CCWGG	1 cut(s)	164
EcoT22I	ATGCAT	1 cut(s)	563
EgeI	GGCGCC	1 cut(s)	695
EheI	GGCGCC	1 cut(s)	695
FaeI	CATG	5 cut(s)	325, 341, 412, 565, 819
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 243, 275
FatI	CATG	5 cut(s)	321, 337, 408, 561, 815
FauNDI	CATATG	1 cut(s)	717
Fnu4HI	GCNGC	1 cut(s)	712
FokI	GGATG	2 cut(s)	3, 848
Fsp4HI	GCNGC	1 cut(s)	712
FspBI	CTAG	3 cut(s)	108, 174, 234
GlaI	GCGC	2 cut(s)	413, 695
GluI	GCNGC	1 cut(s)	712
HaeII	RGCGCY	1 cut(s)	697
HhaI	GCGC	2 cut(s)	414, 696
Hin1I	GRCGYC	1 cut(s)	694
Hin1II	CATG	5 cut(s)	325, 341, 412, 565, 819
Hin6I	GCGC	2 cut(s)	412, 694
HinP1I	GCGC	2 cut(s)	412, 694
HinfI	GANTC	4 cut(s)	189, 350, 420, 428
HphI	GGTGA	2 cut(s)	154, 676
Hpy166II	GTNNAC	2 cut(s)	457, 706
Hpy188I	TCNGA	2 cut(s)	159, 355
Hpy188III	TCNNGA	3 cut(s)	20, 338, 464
Hpy8I	GTNNAC	2 cut(s)	457, 706
HpyAV	CCTTC	6 cut(s)	102, 245, 335, 654, 728, 793
HpyCH4III	ACNGT	1 cut(s)	461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	156, 516
Hsp92I	GRCGYC	1 cut(s)	694
Hsp92II	CATG	5 cut(s)	325, 341, 412, 565, 819
HspAI	GCGC	2 cut(s)	412, 694
KasI	GGCGCC	1 cut(s)	693
Kzo9I	GATC	2 cut(s)	159, 466
LguI	GCTCTTC	2 cut(s)	66, 648
LmnI	GCTCC	3 cut(s)	318, 388, 788
Lsp1109I	GCAGC	1 cut(s)	723
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	3 cut(s)	108, 174, 234
MaeIII	GTNAC	5 cut(s)	46, 229, 442, 669, 740
MalI	GATC	2 cut(s)	161, 468
MboI	GATC	2 cut(s)	159, 466
MboII	GAAGA	5 cut(s)	53, 230, 251, 423, 665
MfeI	CAATTG	3 cut(s)	246, 589, 659
MflI	RGATCY	1 cut(s)	466
MluCI	AATT	7 cut(s)	74, 131, 246, 277, 520, 589, 659
Mly113I	GGCGCC	1 cut(s)	694
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	2 cut(s)	136, 345
Mph1103I	ATGCAT	1 cut(s)	563
MroXI	GAANNNNTTC	1 cut(s)	241
MseI	TTAA	3 cut(s)	30, 117, 312
MslI	CAYNNNNRTG	1 cut(s)	814
MspR9I	CCNGG	1 cut(s)	166
MunI	CAATTG	3 cut(s)	246, 589, 659
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	143
NarI	GGCGCC	1 cut(s)	694
NdeI	CATATG	1 cut(s)	717
NdeII	GATC	2 cut(s)	159, 466
NlaIII	CATG	5 cut(s)	325, 341, 412, 565, 819
NlaIV	GGNNCC	3 cut(s)	105, 390, 695
NmuCI	GTSAC	2 cut(s)	46, 669
NsiI	ATGCAT	1 cut(s)	563
NspI	RCATGY	1 cut(s)	819
PagI	TCATGA	1 cut(s)	337
PciI	ACATGT	1 cut(s)	815
PciSI	GCTCTTC	2 cut(s)	66, 648
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	189, 420, 428
PkrI	GCNGC	1 cut(s)	713
PleI	GAGTC	1 cut(s)	358
PluTI	GGCGCC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	358
PscI	ACATGT	1 cut(s)	815
PshAI	GACNNNNGTC	2 cut(s)	44, 203
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	3 cut(s)	105, 390, 695
PstI	CTGCAG	2 cut(s)	652, 713
PsuI	RGATCY	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	814
SapI	GCTCTTC	2 cut(s)	66, 648
SaqAI	TTAA	3 cut(s)	30, 117, 312
SatI	GCNGC	1 cut(s)	712
Sau3AI	GATC	2 cut(s)	159, 466
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	166
SfaNI	GCATC	1 cut(s)	25
SfcI	CTRYAG	3 cut(s)	147, 648, 709
SfoI	GGCGCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	814
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
Sse9I	AATT	7 cut(s)	74, 131, 246, 277, 520, 589, 659
SspDI	GGCGCC	1 cut(s)	693
SspMI	CTAG	3 cut(s)	108, 174, 234
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	461
TaqI	TCGA	1 cut(s)	606
TasI	AATT	7 cut(s)	74, 131, 246, 277, 520, 589, 659
TfiI	GAWTC	3 cut(s)	189, 420, 428
Tru1I	TTAA	3 cut(s)	30, 117, 312
Tru9I	TTAA	3 cut(s)	30, 117, 312
TscAI	CASTG	4 cut(s)	335, 678, 695, 704
TseFI	GTSAC	2 cut(s)	46, 669
TseI	GCWGC	1 cut(s)	711
Tsp45I	GTSAC	2 cut(s)	46, 669
TspDTI	ATGAA	2 cut(s)	299, 354
TspRI	CASTG	4 cut(s)	335, 678, 695, 704
XagI	CCTNNNNNAGG	1 cut(s)	339
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	819
XmnI	GAANNNNTTC	1 cut(s)	241
XspI	CTAG	3 cut(s)	108, 174, 234
Zsp2I	ATGCAT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.