Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Reverse (-)

67717970 .. 67722193

Gene Structure 4224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG424800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2442 bp

ATGGCCAGTACCAGCAGAGTCCCCCGCTCCGATCACCGCCGCGACGACGACGATGACGACGACTTCATGGACATCGATACGCTCGACTACGACGCCGAAATTGCCTTCAACCTCCAACTCCAAGAAGCCTTAACCGCCTCCCTCGCCCCTCAACCACCCTCCTCCGCCGCCCGAAACGACGCCGCGTCGGTACTCGTCCGACTGGAGCAGGCTCTGAAAGACCGCGTGCAGAGCGAGATCGAACTGCGGCGGGCGAGGGACGATCTCGCGCGTGTCATTCACGACGCCAAGGTCGCGAGGGAGATCGCGGACATTCCAGACGACGAGTGGGAAAAGTCCGGCAGCGACTTCGCCAAGCCCTTCGACGGAGGCTCGTCGTCGGCGGCGGCGGCGGCGAGTGTGGAGAGCGAGGAGGGCGAGTTCAGGCTCTATTTCAAGGGTTTGGTGAGCGAGGAACAGGTTGGGGATCGGAAATTGGTGCTGGCCGGGATCGGAGTAGCGATATGCGACCCCAGGGATAATCTGGTGTTCGAGGTTAGGAAACCGCTGATTGGGAATGGGCTTAGTAGAAATTCGGCCCAATTGAAGGCCTTGATCGAAGGGCTCACTGCTGCTCTGTCTTTGGGGCTGAAGCGAATCACCTTCTTCTGCGATAACTATCCAATCTTTCAGTTTGTTAATGGGAAATGGCCAGCAAAGCAGCGCAAGGTTTTAAATCTTGTTAATCAGGTTAAGAGCCTTCGAAGCAAGTTTATGCAGTGCAATTCCAGGCTTGTGCCTCGGTTGGAAATTAAGTTTGCATTTAAACTTGCAAGAGATGCCATAGAGTCTCAGTCTCCTTCTCAGATGAAGCCTGCAGAATCTACCAGTCACAAGAATGTGAAAGAGACTTGTGTGATTTGTATGGAAGATAGTGATGTTAGTCAGATGTTTTCAGTTGATGGCTGCCTACATCGATATTGCTATTCTTGTATGAAACAGCATGTGGAGGTGAAGTTGCTTCATGGGATCCTTCCTAAATGCCCTCATGAAGACTGTAAGTCCGACCTTAGTGTCGACAGTTGTGCGAAATTCTTGACACCTAAACATGTTGACACTATGCGTCAACGTATAAAGGAAGCTTCAATTCCTGCAACTGAGAGAGTTTATTGCCCATATCCAAGGTGCTCTCTCTTAATGTCAAAAAGCGAGGTTTTACAACATGCTAAGAAAACCTTGATGGGGGCTGTGGAACAATCAGGGCTTAGGAGATGCATGAAATGTCACTACCTTTTTTGCATCAATTGTAAAGTCCCTTGGCACAGAAACATCACATGCGCTGACTACAAAAAGTCAAATCCTAATCCTCCAGAAGAGGACACAAAGCTAAAGTTCCTTGCCTCTAGTAAGCTTTGGCGCCAATGTGTGAAGTGCAGCCATATGATTGAACTTCTTGAAGGTTGCTACCACATGACTTGCAGGTGTAATTATGAGTTCTGCTATAATTGTGGAGCTGAGTGGAAAGACAAGAAGGCAACATGTACATGCCCGCTGTGGATTGAGGATAATATTTTGCATGAGGATGATGATTTTGATGGAGAGTCGGATTCTGAATCTGAAGTTGAATTTGTAAGTGAGCATGATGGTTGCCATTATTGTGGAGCTGAGTGGAAAGACAGAAAGGCAACATGTTCATGCCCACTATCAGATGAGGATAGCAGTTTGGATGGCCAAGTTGATAAATATTTTGAGGAGGAAGAAGATGATGAAGATGAGGACTACAATGATGATGAATATCAAAGGGAAGATGAGGAGGAAAAAGAAGTTGGAGGTCATAAGTATGAAAACGATAGTGAAGATGAATATGAAAGTGAAAGCGGTGTAAGTGAGGAAGAGGTTCAGGAGAGACAGGTTCAAGAGCAGTTTTTGGGGAAAGATATCGAGAATCACATCTTGTCTAATGAAGATGAATATTATGGGGTGGAGGAATATCAAAGTGAAGATGAGGAGGAAAAAGAAGTTGGAGGTGATAAGTATGAAAACGATAGTGAAGATGAATATGAAAATGAAAGCGGTGTTAGTGTGGAAGAGGTTCAGGAGAGACAGGTTCAAGAGCAGTTTTTGGGGAAAGATATTGAGAATCAGATCTTGTCTGATGAAGGTGAATATTATGGGGTGGAGGAAGAAGAAGATGACAACGACGGCGAGGACTTCAATAATAGTGAGTGTCAAAGTGAGGATGAGGAGGAAAATGAAGTTGGGGGTGATGAATATGAAAACGAAGGCATTGTAGTTGAGGATGAGGTGCAGAAGGGACAGATTCAAGAGGAGGTTTTGGACATGGATAGGGGGGATCATATCTCGTCCTATGACGATGATATATATTTTGATGTAGAGTATGAGGAAGATGAAGAGGAGAACTATTGTGACTTCGATTGTTGTGACTCTGACTCGGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

813

Amino Acids

93.03

Weight (kDa)

4.36

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	161 - 274	1e-25	Reverse transcriptase-like
IBR	PF01485	378 - 439	1.7e-10	IBR domain, a half RING-finger domain
IBR	PF01485	457 - 507	2.6e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	467 - 504	3.8e-06	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1449
AasI	GACNNNNNNGTC	2 cut(s)	290, 1052
Acc36I	ACCTGC	1 cut(s)	1449
AccB1I	GGYRCC	1 cut(s)	1395
AccBSI	CCGCTC	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	1056
AccII	CGCG	7 cut(s)	42, 185, 225, 269, 271, 296, 308
AclWI	GGATC	5 cut(s)	474, 497, 1003, 1016, 2340
AcoI	YGGCCR	4 cut(s)	3, 483, 689, 1708
AcsI	RAATTY	3 cut(s)	571, 1070, 1604
AcuI	CTGAAG	2 cut(s)	650, 1617
AcyI	GRCGYC	4 cut(s)	93, 180, 285, 1396
AfaI	GTAC	3 cut(s)	10, 192, 1522
AfiI	CCNNNNNNNGG	4 cut(s)	365, 551, 586, 1221
AflIII	ACRYGT	3 cut(s)	1087, 1517, 1667
AhdI	GACNNNNNGTC	2 cut(s)	184, 1039
AjnI	CCWGG	2 cut(s)	512, 767
AjuI	GAANNNNNNNTTGG	6 cut(s)	1788, 1820, 1983, 2015, 2220, 2252
AloI	GAACNNNNNNTCC	2 cut(s)	404, 436
AluBI	AGCT	5 cut(s)	1121, 1366, 1390, 1493, 1643
AluI	AGCT	5 cut(s)	1121, 1366, 1390, 1493, 1643
Alw21I	GWGCWC	1 cut(s)	1169
Alw26I	GTCTC	5 cut(s)	834, 840, 881, 1879, 2074
AlwI	GGATC	5 cut(s)	474, 497, 1003, 1016, 2340
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	6 cut(s)	3, 483, 576, 588, 689, 1708
ApeKI	GCWGC	5 cut(s)	342, 611, 700, 945, 1413
ApoI	RAATTY	3 cut(s)	571, 1070, 1604
Asp700I	GAANNNNTTC	2 cut(s)	1875, 2070
AspLEI	GCGC	4 cut(s)	271, 705, 1319, 1398
AspS9I	GGNCC	1 cut(s)	577
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	7 cut(s)	26, 457, 631, 1003, 2018, 2153, 2255
AsuII	TTCGAA	1 cut(s)	742
BalI	TGGCCA	3 cut(s)	5, 691, 1710
BamHI	GGATCC	1 cut(s)	1008
BanI	GGYRCC	1 cut(s)	1395
BanII	GRGCYC	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	1038
Bbv12I	GWGCWC	1 cut(s)	1169
BbvI	GCAGC	5 cut(s)	354, 598, 712, 932, 1425
BccI	CCATC	5 cut(s)	935, 1213, 1568, 1616, 1700
BceAI	ACGGC	1 cut(s)	2197
BcgI	CGANNNNNNTGC	4 cut(s)	331, 365, 1046, 1080
BciT130I	CCWGG	2 cut(s)	514, 769
BcnI	CCSGG	1 cut(s)	487
BcoDI	GTCTC	5 cut(s)	834, 840, 881, 1879, 2074
BfaI	CTAG	1 cut(s)	1383
BfmI	CTRYAG	1 cut(s)	855
BfoI	RGCGCY	1 cut(s)	1399
BfuAI	ACCTGC	1 cut(s)	1449
BglII	AGATCT	1 cut(s)	2124
Bme1390I	CCNGG	3 cut(s)	487, 514, 769
BmeRI	GACNNNNNGTC	2 cut(s)	184, 1039
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	2 cut(s)	1010, 1397
BmrFI	CCNGG	3 cut(s)	487, 514, 769
BmsI	GCATC	3 cut(s)	808, 1241, 1287
BpiI	GAAGAC	1 cut(s)	1038
BpmI	CTGGAG	2 cut(s)	224, 1332
Bpu10I	CCTNAGC	1 cut(s)	1244
Bpu14I	TTCGAA	1 cut(s)	742
BpuMI	CCSGG	1 cut(s)	487
Bsa29I	ATCGAT	2 cut(s)	75, 955
BsaBI	GATNNNNATC	2 cut(s)	657, 1773
BsaHI	GRCGYC	4 cut(s)	93, 180, 285, 1396
BsaJI	CCNNGG	6 cut(s)	288, 512, 513, 779, 1160, 1295
BsaXI	ACNNNNNCTCC	4 cut(s)	404, 434, 980, 1010
Bsc4I	CCNNNNNNNGG	4 cut(s)	365, 551, 586, 1221
Bse1I	ACTGG	3 cut(s)	6, 207, 867
Bse8I	GATNNNNATC	2 cut(s)	657, 1773
BseBI	CCWGG	2 cut(s)	514, 769
BseCI	ATCGAT	2 cut(s)	75, 955
BseDI	CCNNGG	6 cut(s)	288, 512, 513, 779, 1160, 1295
BseGI	GGATG	4 cut(s)	1567, 1711, 2224, 2284
BseJI	GATNNNNATC	2 cut(s)	657, 1773
BseLI	CCNNNNNNNGG	4 cut(s)	365, 551, 586, 1221
BseMII	CTCAG	5 cut(s)	845, 857, 1128, 1485, 1635
BseNI	ACTGG	3 cut(s)	6, 207, 867
BseRI	GAGGAG	8 cut(s)	151, 425, 1745, 1805, 2000, 2237, 2321, 2408
BseXI	GCAGC	5 cut(s)	354, 598, 712, 932, 1425
BsgI	GTGCAG	3 cut(s)	248, 1432, 2306
Bsh1236I	CGCG	7 cut(s)	42, 185, 225, 269, 271, 296, 308
BshFI	GGCC	6 cut(s)	5, 485, 578, 590, 691, 1710
BshNI	GGYRCC	1 cut(s)	1395
BshVI	ATCGAT	2 cut(s)	75, 955
BsiHKAI	GWGCWC	1 cut(s)	1169
BsiSI	CCGG	2 cut(s)	339, 486
BslFI	GGGAC	4 cut(s)	5, 272, 1277, 2307
BslI	CCNNNNNNNGG	4 cut(s)	365, 551, 586, 1221
BsmAI	GTCTC	5 cut(s)	834, 840, 881, 1879, 2074
BsmFI	GGGAC	4 cut(s)	5, 272, 1277, 2307
BsnI	GGCC	6 cut(s)	5, 485, 578, 590, 691, 1710
Bsp119I	TTCGAA	1 cut(s)	742
Bsp1286I	GDGCHC	2 cut(s)	606, 1169
Bsp1407I	TGTACA	1 cut(s)	1520
Bsp68I	TCGCGA	1 cut(s)	296
BspANI	GGCC	6 cut(s)	5, 485, 578, 590, 691, 1710
BspCNI	CTCAG	5 cut(s)	844, 856, 1129, 1486, 1636
BspDI	ATCGAT	2 cut(s)	75, 955
BspFNI	CGCG	7 cut(s)	42, 185, 225, 269, 271, 296, 308
BspHI	TCATGA	1 cut(s)	1027
BspLI	GGNNCC	2 cut(s)	1010, 1397
BspMAI	CTGCAG	1 cut(s)	859
BspMI	ACCTGC	1 cut(s)	1449
BspPI	GGATC	5 cut(s)	474, 497, 1003, 1016, 2340
BspT104I	TTCGAA	1 cut(s)	742
BspT107I	GGYRCC	1 cut(s)	1395
BsrBI	CCGCTC	1 cut(s)	27
BsrGI	TGTACA	1 cut(s)	1520
BsrI	ACTGG	3 cut(s)	6, 207, 867
BssECI	CCNNGG	6 cut(s)	288, 512, 513, 779, 1160, 1295
BssNI	GRCGYC	4 cut(s)	93, 180, 285, 1396
BssT1I	CCWWGG	3 cut(s)	288, 1160, 1295
Bst2UI	CCWGG	2 cut(s)	514, 769
Bst4CI	ACNGT	2 cut(s)	1037, 1061
Bst6I	CTCTTC	4 cut(s)	1347, 1866, 2061, 2385
BstACI	GRCGYC	4 cut(s)	93, 180, 285, 1396
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstAUI	TGTACA	1 cut(s)	1520
BstBI	TTCGAA	1 cut(s)	742
BstC8I	GCNNGC	7 cut(s)	210, 227, 252, 483, 693, 855, 1529
BstDEI	CTNAG	9 cut(s)	563, 831, 843, 1049, 1137, 1206, 1244, 1494, 1644
BstF5I	GGATG	4 cut(s)	1567, 1711, 2224, 2284
BstFNI	CGCG	7 cut(s)	42, 185, 225, 269, 271, 296, 308
BstH2I	RGCGCY	1 cut(s)	1399
BstHHI	GCGC	4 cut(s)	271, 705, 1319, 1398
BstMAI	GTCTC	5 cut(s)	834, 840, 881, 1879, 2074
BstNI	CCWGG	2 cut(s)	514, 769
BstNSI	RCATGY	7 cut(s)	986, 1091, 1205, 1317, 1521, 1527, 1671
BstSCI	CCNGG	3 cut(s)	485, 512, 767
BstSFI	CTRYAG	1 cut(s)	855
BstUI	CGCG	7 cut(s)	42, 185, 225, 269, 271, 296, 308
BstV1I	GCAGC	5 cut(s)	354, 598, 712, 932, 1425
BstV2I	GAAGAC	1 cut(s)	1038
BstX2I	RGATCY	2 cut(s)	1008, 2124
BstXI	CCANNNNNNTGG	1 cut(s)	1637
BstYI	RGATCY	2 cut(s)	1008, 2124
Bsu15I	ATCGAT	2 cut(s)	75, 955
BsuRI	GGCC	6 cut(s)	5, 485, 578, 590, 691, 1710
BsuTUI	ATCGAT	2 cut(s)	75, 955
BtsCI	GGATG	4 cut(s)	1567, 1711, 2224, 2284
BtsI	GCAGTG	2 cut(s)	606, 764
BtsIMutI	CAGTG	2 cut(s)	606, 764
BtuMI	TCGCGA	1 cut(s)	296
BveI	ACCTGC	1 cut(s)	1449
Cac8I	GCNNGC	7 cut(s)	210, 227, 252, 483, 693, 855, 1529
CaiI	CAGNNNCTG	1 cut(s)	214
CciI	TCATGA	1 cut(s)	1027
CfoI	GCGC	4 cut(s)	271, 705, 1319, 1398
Cfr13I	GGNCC	1 cut(s)	577
ClaI	ATCGAT	2 cut(s)	75, 955
CseI	GACGC	5 cut(s)	101, 174, 188, 293, 1091
Csp6I	GTAC	3 cut(s)	9, 191, 1521
CspCI	CAANNNNNGTGG	2 cut(s)	1436, 1471
CviQI	GTAC	3 cut(s)	9, 191, 1521
DdeI	CTNAG	9 cut(s)	563, 831, 843, 1049, 1137, 1206, 1244, 1494, 1644
DinI	GGCGCC	1 cut(s)	1397
DraI	TTTAAA	2 cut(s)	714, 805
DrdI	GACNNNNNNGTC	2 cut(s)	290, 1052
DriI	GACNNNNNGTC	2 cut(s)	184, 1039
DseDI	GACNNNNNNGTC	2 cut(s)	290, 1052
EaeI	YGGCCR	4 cut(s)	3, 483, 689, 1708
Eam1104I	CTCTTC	4 cut(s)	1347, 1866, 2061, 2385
Eam1105I	GACNNNNNGTC	2 cut(s)	184, 1039
EarI	CTCTTC	4 cut(s)	1347, 1866, 2061, 2385
EciI	GGCGGA	1 cut(s)	154
Eco130I	CCWWGG	3 cut(s)	288, 1160, 1295
Eco147I	AGGCCT	1 cut(s)	590
Eco24I	GRGCYC	1 cut(s)	606
Eco32I	GATATC	1 cut(s)	1918
Eco57I	CTGAAG	2 cut(s)	650, 1617
EcoRII	CCWGG	2 cut(s)	512, 767
EcoRV	GATATC	1 cut(s)	1918
EcoT14I	CCWWGG	3 cut(s)	288, 1160, 1295
EcoT22I	ATGCAT	1 cut(s)	1256
EcoT38I	GRGCYC	1 cut(s)	606
EgeI	GGCGCC	1 cut(s)	1397
EheI	GGCGCC	1 cut(s)	1397
ErhI	CCWWGG	3 cut(s)	288, 1160, 1295
FalI	AAGNNNNNCTT	2 cut(s)	1199, 1231
FaqI	GGGAC	4 cut(s)	5, 272, 1277, 2307
FauI	CCCGC	3 cut(s)	32, 243, 1536
FauNDI	CATATG	1 cut(s)	1419
FblI	GTMKAC	1 cut(s)	1056
FokI	GGATG	4 cut(s)	1574, 1718, 2231, 2291
FriOI	GRGCYC	1 cut(s)	606
FspBI	CTAG	1 cut(s)	1383
GlaI	GCGC	4 cut(s)	270, 704, 1318, 1397
GsuI	CTGGAG	2 cut(s)	224, 1332
HaeII	RGCGCY	1 cut(s)	1399
HaeIII	GGCC	6 cut(s)	5, 485, 578, 590, 691, 1710
HapII	CCGG	2 cut(s)	339, 486
HgaI	GACGC	5 cut(s)	101, 174, 188, 293, 1091
HhaI	GCGC	4 cut(s)	271, 705, 1319, 1398
Hin1I	GRCGYC	4 cut(s)	93, 180, 285, 1396
Hin6I	GCGC	4 cut(s)	269, 703, 1317, 1396
HinP1I	GCGC	4 cut(s)	269, 703, 1317, 1396
HincII	GTYRAC	3 cut(s)	1057, 1093, 1106
HindII	GTYRAC	3 cut(s)	1057, 1093, 1106
HindIII	AAGCTT	2 cut(s)	1119, 1388
HpaII	CCGG	2 cut(s)	339, 486
HphI	GGTGA	7 cut(s)	26, 457, 631, 1003, 2018, 2153, 2255
Hpy166II	GTNNAC	3 cut(s)	1057, 1093, 1106
Hpy8I	GTNNAC	3 cut(s)	1057, 1093, 1106
HpyCH4III	ACNGT	2 cut(s)	1037, 1061
HpyCH4IV	ACGT	1 cut(s)	1108
HpyF3I	CTNAG	9 cut(s)	563, 831, 843, 1049, 1137, 1206, 1244, 1494, 1644
HpySE526I	ACGT	1 cut(s)	1108
Hsp92I	GRCGYC	4 cut(s)	93, 180, 285, 1396
HspAI	GCGC	4 cut(s)	269, 703, 1317, 1396
KasI	GGCGCC	1 cut(s)	1395
LmnI	GCTCC	4 cut(s)	32, 205, 1490, 1640
Lsp1109I	GCAGC	5 cut(s)	354, 598, 712, 932, 1425
LweI	GCATC	3 cut(s)	808, 1241, 1287
MaeI	CTAG	1 cut(s)	1383
MaeII	ACGT	1 cut(s)	1108
MaeIII	GTNAC	4 cut(s)	869, 1262, 2405, 2420
MbiI	CCGCTC	1 cut(s)	27
MfeI	CAATTG	2 cut(s)	581, 1282
MflI	RGATCY	2 cut(s)	1008, 2124
MhlI	GDGCHC	2 cut(s)	606, 1169
MlsI	TGGCCA	3 cut(s)	5, 691, 1710
MluNI	TGGCCA	3 cut(s)	5, 691, 1710
Mly113I	GGCGCC	1 cut(s)	1396
MlyI	GAGTC	5 cut(s)	27, 836, 1589, 2417, 2423
MmeI	TCCRAC	7 cut(s)	139, 223, 765, 1068, 1563, 1786, 1981
Mox20I	TGGCCA	3 cut(s)	5, 691, 1710
Mph1103I	ATGCAT	1 cut(s)	1256
MroXI	GAANNNNTTC	2 cut(s)	1875, 2070
MscI	TGGCCA	3 cut(s)	5, 691, 1710
MseI	TTAA	8 cut(s)	131, 678, 713, 723, 732, 792, 804, 1175
MslI	CAYNNNNRTG	6 cut(s)	876, 1522, 1560, 1635, 1672, 1818
Msp20I	TGGCCA	3 cut(s)	5, 691, 1710
MspA1I	CMGCKG	2 cut(s)	547, 1531
MspI	CCGG	2 cut(s)	339, 486
MspR9I	CCNGG	3 cut(s)	487, 514, 769
MunI	CAATTG	2 cut(s)	581, 1282
MvaI	CCWGG	2 cut(s)	514, 769
MvnI	CGCG	7 cut(s)	42, 185, 225, 269, 271, 296, 308
NarI	GGCGCC	1 cut(s)	1396
NciI	CCSGG	1 cut(s)	487
NdeI	CATATG	1 cut(s)	1419
NlaIV	GGNNCC	2 cut(s)	1010, 1397
NmuCI	GTSAC	4 cut(s)	869, 1262, 2405, 2420
NruI	TCGCGA	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	1256
NspI	RCATGY	7 cut(s)	986, 1091, 1205, 1317, 1521, 1527, 1671
NspV	TTCGAA	1 cut(s)	742
PagI	TCATGA	1 cut(s)	1027
PaqCI	CACCTGC	1 cut(s)	1449
PasI	CCCWGGG	1 cut(s)	513
PceI	AGGCCT	1 cut(s)	590
PciI	ACATGT	3 cut(s)	1087, 1517, 1667
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 57, 81
PdmI	GAANNNNTTC	2 cut(s)	1875, 2070
PfeI	GAWTC	7 cut(s)	636, 860, 1586, 1592, 1924, 2119, 2299
PleI	GAGTC	5 cut(s)	26, 835, 1588, 2417, 2423
PluTI	GGCGCC	1 cut(s)	1399
PpsI	GAGTC	5 cut(s)	26, 835, 1588, 2417, 2423
PscI	ACATGT	3 cut(s)	1087, 1517, 1667
Psp6I	CCWGG	2 cut(s)	512, 767
PspGI	CCWGG	2 cut(s)	512, 767
PspN4I	GGNNCC	2 cut(s)	1010, 1397
PspPI	GGNCC	1 cut(s)	577
PstI	CTGCAG	1 cut(s)	859
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	2 cut(s)	1008, 2124
RruI	TCGCGA	1 cut(s)	296
RsaI	GTAC	3 cut(s)	10, 192, 1522
RsaNI	GTAC	3 cut(s)	9, 191, 1521
RseI	CAYNNNNRTG	6 cut(s)	876, 1522, 1560, 1635, 1672, 1818
SalI	GTCGAC	1 cut(s)	1055
SaqAI	TTAA	8 cut(s)	131, 678, 713, 723, 732, 792, 804, 1175
Sau96I	GGNCC	1 cut(s)	577
SchI	GAGTC	5 cut(s)	27, 836, 1589, 2417, 2423
ScrFI	CCNGG	3 cut(s)	487, 514, 769
SduI	GDGCHC	2 cut(s)	606, 1169
SfaNI	GCATC	3 cut(s)	808, 1241, 1287
SfcI	CTRYAG	1 cut(s)	855
SfoI	GGCGCC	1 cut(s)	1397
SfuI	TTCGAA	1 cut(s)	742
SmiMI	CAYNNNNRTG	6 cut(s)	876, 1522, 1560, 1635, 1672, 1818
SseBI	AGGCCT	1 cut(s)	590
SspDI	GGCGCC	1 cut(s)	1395
SspI	AATATT	4 cut(s)	1549, 1724, 1952, 2147
SspMI	CTAG	1 cut(s)	1383
StuI	AGGCCT	1 cut(s)	590
StyD4I	CCNGG	3 cut(s)	485, 512, 767
StyI	CCWWGG	3 cut(s)	288, 1160, 1295
TaaI	ACNGT	2 cut(s)	1037, 1061
TaiI	ACGT	1 cut(s)	1111
TatI	WGTACW	1 cut(s)	1520
TauI	GCSGC	8 cut(s)	42, 170, 185, 250, 386, 389, 392, 395
TfiI	GAWTC	7 cut(s)	636, 860, 1586, 1592, 1924, 2119, 2299
Tru1I	TTAA	8 cut(s)	131, 678, 713, 723, 732, 792, 804, 1175
Tru9I	TTAA	8 cut(s)	131, 678, 713, 723, 732, 792, 804, 1175
TscAI	CASTG	2 cut(s)	613, 764
TseFI	GTSAC	4 cut(s)	869, 1262, 2405, 2420
TseI	GCWGC	5 cut(s)	342, 611, 700, 945, 1413
Tsp45I	GTSAC	4 cut(s)	869, 1262, 2405, 2420
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	613, 764
XapI	RAATTY	3 cut(s)	571, 1070, 1604
XceI	RCATGY	7 cut(s)	986, 1091, 1205, 1317, 1521, 1527, 1671
XcmI	CCANNNNNNNNNTGG	2 cut(s)	324, 520
XmiI	GTMKAC	1 cut(s)	1056
XmnI	GAANNNNTTC	2 cut(s)	1875, 2070
XspI	CTAG	1 cut(s)	1383
Zsp2I	ATGCAT	1 cut(s)	1256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.