AT4G25330

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000405
Physical Location & Seq
Forward (+)
12957834 .. 12958791
958 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25330.1

Sequence Viewer

Length: 690 bp
ATGCACAACTCTCTAACTTCTAATCAGAGTGGGGCTACTAGTCCGACGGTTTTCTCCGGCGAGTTCGCCGATGACGTCGACTGGTCCGATGAAAACTGGCCGGAACTAGAGTTCCGTTCAGCGGAGGACGAAGCTTGGTACGCCGTAGAATTTTCTGACATCTGTGACGCTTTGTGGATCAGCTTCAACGGCTTCTCTTATGAGCACGACGAGTTTTATCCAGCTGACGATTTCAAAAACTCCGACGAGATTCAAGAATTCGAAGAGAGGTTTCGAGCTTGTTCCGAGCAGATGCAAGACATCGAATGTCCCAAGGTCCATGAAGGCACCCAGGTCTGCGCCACGTTTCCTTCCGTCACCGAAGAAGTCAAGTTCTACGACGCTATCGTCGTTACGGTGGAGAGGACGAAGCATGAACGAGACGAGGAAGGGAACGAAATTTGTGGATGTGATTTCAAACTTTTCTGGAAACAAGGTCCTTGGATTAACCAAGTGACTACTGCGAAAGTTGGAGATATTTGTCTCAGAGCAAAGGATAATCGAATAAATCCAAAAGTGGTTTCGTTCTTGAAAGAAGCTAGAAGGAAGCTTCATGGAGAAACATGTAATCAAGGGGAAGAGACAGAGTGGCAAAAGATTCTTGAGAAGGTGAATTCTGCTATTCAAAACAACTTAAGCGTTGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

229

Amino Acids

26.37

Weight (kDa)

4.43

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 33 - 174 2e-35 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 386
AatII GACGTC 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 326
AccI GTMKAC 1 cut(s) 78
AciI CCGC 1 cut(s) 122
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 98
AcsI RAATTY 4 cut(s) 149, 257, 438, 652
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 121
AflII CTTAAG 1 cut(s) 673
AflIII ACRYGT 1 cut(s) 602
AgsI TTSAA 6 cut(s) 187, 235, 254, 457, 571, 665
AhlI ACTAGT 1 cut(s) 38
AjnI CCWGG 1 cut(s) 330
AjuI GAANNNNNNNTTGG 2 cut(s) 544, 576
AloI GAACNNNNNNTCC 4 cut(s) 95, 96, 127, 128
AluBI AGCT 6 cut(s) 134, 183, 224, 278, 578, 589
AluI AGCT 6 cut(s) 134, 183, 224, 278, 578, 589
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 3 cut(s) 414, 527, 614
AlwI GGATC 1 cut(s) 185
AoxI GGCC 1 cut(s) 98
ApoI RAATTY 4 cut(s) 149, 257, 438, 652
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 3 cut(s) 84, 316, 476
AsuHPI GGTGA 2 cut(s) 349, 661
AsuII TTCGAA 1 cut(s) 261
AvaII GGWCC 3 cut(s) 84, 316, 476
BanI GGYRCC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 207
BccI CCATC 1 cut(s) 677
BceAI ACGGC 2 cut(s) 128, 205
BciT130I CCWGG 1 cut(s) 332
BcoDI GTCTC 3 cut(s) 414, 527, 614
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 3 cut(s) 39, 107, 579
BfrI CTTAAG 1 cut(s) 673
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 3 cut(s) 84, 316, 476
BmgT120I GGNCC 3 cut(s) 84, 316, 476
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 662
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 312, 330, 479
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 2 cut(s) 86, 101
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 3 cut(s) 312, 330, 479
BseGI GGATG 1 cut(s) 452
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 538
BseNI ACTGG 2 cut(s) 86, 101
BshFI GGCC 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 2 cut(s) 57, 101
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 3 cut(s) 414, 527, 614
BsmBI CGTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 294
BsnI GGCC 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 537
BspLI GGNNCC 1 cut(s) 328
BspPI GGATC 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 326
BspTI CTTAAG 1 cut(s) 673
BsrI ACTGG 2 cut(s) 86, 101
BssECI CCNNGG 3 cut(s) 312, 330, 479
BssMI GATC 1 cut(s) 177
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 312, 479
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 49, 397
Bst6I CTCTTC 2 cut(s) 258, 612
BstACI GRCGYC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 673
BstBI TTCGAA 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 524
BstF5I GGATG 1 cut(s) 452
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 3 cut(s) 414, 527, 614
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 140, 189
BstNI CCWGG 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 452
CfoI GCGC 1 cut(s) 341
Cfr13I GGNCC 3 cut(s) 84, 316, 476
CseI GACGC 2 cut(s) 176, 389
Csp6I GTAC 1 cut(s) 139
CviAII CATG 4 cut(s) 320, 413, 593, 603
CviJI RGCY 9 cut(s) 35, 100, 134, 183, 192, 224, 278, 578, 589
CviKI_1 RGCY 9 cut(s) 35, 100, 134, 183, 192, 224, 278, 578, 589
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 524
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
DrdI GACNNNNNNGTC 1 cut(s) 386
DseDI GACNNNNNNGTC 1 cut(s) 386
EaeI YGGCCR 1 cut(s) 98
Eam1104I CTCTTC 2 cut(s) 258, 612
EarI CTCTTC 2 cut(s) 258, 612
Eco130I CCWWGG 2 cut(s) 312, 479
Eco47I GGWCC 3 cut(s) 84, 316, 476
EcoO109I RGGNCCY 1 cut(s) 476
EcoRI GAATTC 2 cut(s) 257, 652
EcoRII CCWGG 1 cut(s) 330
EcoT14I CCWWGG 2 cut(s) 312, 479
ErhI CCWWGG 2 cut(s) 312, 479
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 4 cut(s) 323, 416, 596, 606
FaiI YATR 5 cut(s) 201, 321, 414, 594, 604
FaqI GGGAC 1 cut(s) 294
FatI CATG 4 cut(s) 319, 412, 592, 602
FblI GTMKAC 1 cut(s) 78
FokI GGATG 1 cut(s) 459
FspBI CTAG 3 cut(s) 39, 107, 579
GlaI GCGC 1 cut(s) 340
HaeIII GGCC 1 cut(s) 100
HapII CCGG 2 cut(s) 57, 101
HgaI GACGC 2 cut(s) 176, 389
HhaI GCGC 1 cut(s) 341
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 4 cut(s) 323, 416, 596, 606
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 2 cut(s) 132, 587
HinfI GANTC 2 cut(s) 250, 637
HpaII CCGG 2 cut(s) 57, 101
HphI GGTGA 2 cut(s) 349, 661
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 7 cut(s) 27, 45, 88, 157, 244, 286, 527
Hpy188III TCNNGA 4 cut(s) 254, 466, 568, 641
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 6 cut(s) 49, 80, 212, 248, 383, 392
HpyAV CCTTC 5 cut(s) 317, 360, 422, 576, 640
HpyCH4III ACNGT 2 cut(s) 49, 397
HpyCH4IV ACGT 2 cut(s) 75, 344
HpyCH4V TGCA 2 cut(s) 4, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 189
HpyF3I CTNAG 1 cut(s) 524
HpySE526I ACGT 2 cut(s) 75, 344
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 4 cut(s) 323, 416, 596, 606
HspAI GCGC 1 cut(s) 339
Kzo9I GATC 1 cut(s) 177
LpnPI CCDG 8 cut(s) 67, 70, 82, 114, 234, 317, 344, 451
LweI GCATC 1 cut(s) 282
MaeI CTAG 3 cut(s) 39, 107, 579
MaeII ACGT 2 cut(s) 75, 344
MaeIII GTNAC 4 cut(s) 164, 355, 391, 493
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 3 cut(s) 275, 374, 629
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 4 cut(s) 149, 257, 438, 652
MmeI TCCRAC 3 cut(s) 68, 267, 490
MnlI CCTC 4 cut(s) 118, 261, 396, 418
MseI TTAA 2 cut(s) 486, 674
MspA1I CMGCKG 2 cut(s) 122, 224
MspCI CTTAAG 1 cut(s) 673
MspI CCGG 2 cut(s) 57, 101
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 140, 189
NdeII GATC 1 cut(s) 177
NlaIII CATG 4 cut(s) 323, 416, 596, 606
NlaIV GGNNCC 1 cut(s) 328
NmuCI GTSAC 3 cut(s) 164, 355, 493
NspI RCATGY 1 cut(s) 606
NspV TTCGAA 1 cut(s) 261
PciI ACATGT 1 cut(s) 602
PcsI WCGNNNNNNNCGW 4 cut(s) 72, 84, 384, 387
PfeI GAWTC 2 cut(s) 250, 637
PpuMI RGGWCCY 1 cut(s) 476
PscI ACATGT 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 3 cut(s) 84, 316, 476
PspPPI RGGWCCY 1 cut(s) 476
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 2 cut(s) 486, 674
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 3 cut(s) 84, 316, 476
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 261
SinI GGWCC 3 cut(s) 84, 316, 476
SmlI CTYRAG 2 cut(s) 641, 673
SmoI CTYRAG 2 cut(s) 641, 673
SpeI ACTAGT 1 cut(s) 38
Sse9I AATT 4 cut(s) 149, 257, 438, 652
SsiI CCGC 1 cut(s) 122
SspMI CTAG 3 cut(s) 39, 107, 579
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 2 cut(s) 312, 479
TaaI ACNGT 2 cut(s) 49, 397
TaiI ACGT 2 cut(s) 78, 347
TaqI TCGA 5 cut(s) 78, 261, 274, 303, 541
TasI AATT 4 cut(s) 149, 257, 438, 652
TfiI GAWTC 2 cut(s) 250, 637
Tru1I TTAA 2 cut(s) 486, 674
Tru9I TTAA 2 cut(s) 486, 674
TseFI GTSAC 3 cut(s) 164, 355, 493
Tsp45I GTSAC 3 cut(s) 164, 355, 493
TspDTI ATGAA 4 cut(s) 105, 336, 429, 581
TspGWI ACGGA 2 cut(s) 104, 343
Vha464I CTTAAG 1 cut(s) 673
VpaK11BI GGWCC 3 cut(s) 84, 316, 476
XapI RAATTY 4 cut(s) 149, 257, 438, 652
XceI RCATGY 1 cut(s) 606
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 3 cut(s) 39, 107, 579
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.