Rorug05G0145100

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000405
Physical Location & Seq
Forward (+)
13455385 .. 13456727
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0145100.1

Sequence Viewer

Length: 807 bp
ATGGGAAGGTACTCTGGTTTCGAAAAGGGGGGATTGAAGAAAGGTGCGTGGTCTGCTTGCGAAGACCAGGTTCTCAAGGACTACGTCAAAAAGCACGGTCCAGGCAAATGGGGAAAAGCATCAAGGGAGACCGGTTTGAAGAGATGTGGGAAGAGTGTGAGATTGAGATGGTTGAATTACCTGAGGCCCGGTATCAAGAGAGGCAAGATTACAGAAGATGAAAAAGACCTTATCATCAGGATGCACACACTCTTAGGCAACAGGTGGTCATTGATAGCAGGAAGGATTCCGGGCCGAACTGACAATGAAATAAAGAACTACTGGAATTCCATTCTAAGGAAGAACGTGGGAGAAGAAAGAGAGAGAGAATCAGAAGTGTCGAGAAACGAGATGATCAAGGAGAACTTGCCATCCCTCGTTGGCGACGATGGTCATCCACATTTGACCAAATGCGATGAAGTTCTTAGAGGAGGAGGAGGATTGGTGTGTTTTGCCAGCGATGTTAATGTAGAAGAAGACCACCGGCGTCATTGTCTTGGTGGTACTAGTACCGATACTACTACACTGAGTCCCGGAGTGGGAGTCGAAATCGGAGGCGGGGCAAACAATGATATTCAACCAACAGGAGATGATCTCAATTATAACGCTATGACCTGGAAAGATTCGATAATGGATCTGAATGGAGGCCAACTCGACATATCTGAATTCCTCCAAAGTGACTTTTCGACGTTTTGGGATTCAGATGGGCTCATGAATTTTGAAATCGGAGGTTGCAGCACCATGAATTATGAGTTGCCAAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

268

Amino Acids

29.86

Weight (kDa)

5.93

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.8e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 74 4.8e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 6.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 115 6.3e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 642
AciI CCGC 1 cut(s) 597
AclWI GGATC 1 cut(s) 681
AcsI RAATTY 3 cut(s) 325, 704, 754
AcyI GRCGYC 1 cut(s) 526
AfaI GTAC 3 cut(s) 11, 544, 550
AfiI CCNNNNNNNGG 2 cut(s) 336, 578
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 5 cut(s) 37, 139, 175, 617, 761
AhlI ACTAGT 1 cut(s) 545
AjnI CCWGG 3 cut(s) 66, 100, 653
AloI GAACNNNNNNTCC 2 cut(s) 395, 427
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 681
AoxI GGCC 3 cut(s) 185, 292, 685
ApeKI GCWGC 1 cut(s) 774
ApoI RAATTY 3 cut(s) 325, 704, 754
AsiGI ACCGGT 1 cut(s) 131
AspS9I GGNCC 3 cut(s) 98, 186, 292
AsuC2I CCSGG 3 cut(s) 189, 291, 573
AsuII TTCGAA 1 cut(s) 21
AvaII GGWCC 1 cut(s) 98
AxyI CCTNAGG 1 cut(s) 182
BaeI ACNNNNGTAYC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 750
BbsI GAAGAC 2 cut(s) 69, 522
BbvI GCAGC 1 cut(s) 786
BccI CCATC 4 cut(s) 162, 418, 422, 737
BciT130I CCWGG 3 cut(s) 68, 102, 655
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 3 cut(s) 189, 291, 573
BcoDI GTCTC 1 cut(s) 122
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 1 cut(s) 546
BisI GCNGC 1 cut(s) 775
BlsI GCNGC 1 cut(s) 776
Bme1390I CCNGG 6 cut(s) 68, 102, 189, 291, 573, 655
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 98, 186, 292
BmrFI CCNGG 6 cut(s) 68, 102, 189, 291, 573, 655
BmsI GCATC 2 cut(s) 128, 231
BoxI GACNNNNGTC 1 cut(s) 429
BpiI GAAGAC 2 cut(s) 69, 522
BplI GAGNNNNNCTC 4 cut(s) 618, 650, 675, 707
Bpu14I TTCGAA 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 3 cut(s) 189, 291, 573
BsaBI GATNNNNATC 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 526
BsaI GGTCTC 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 4 cut(s) 468, 498, 567, 597
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 578
Bse118I RCCGGY 2 cut(s) 131, 522
Bse1I ACTGG 1 cut(s) 326
Bse21I CCTNAGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 3 cut(s) 68, 102, 655
BseGI GGATG 3 cut(s) 246, 410, 433
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 2 cut(s) 336, 578
BseMII CTCAG 2 cut(s) 173, 557
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 3 cut(s) 483, 486, 489
BseXI GCAGC 1 cut(s) 786
BshFI GGCC 3 cut(s) 187, 294, 687
BshTI ACCGGT 1 cut(s) 131
BsiSI CCGG 5 cut(s) 132, 189, 290, 523, 573
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 2 cut(s) 336, 578
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 555
BsnI GGCC 3 cut(s) 187, 294, 687
Bso31I GGTCTC 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 750
Bsp143I GATC 3 cut(s) 393, 631, 673
BspACI CCGC 1 cut(s) 597
BspANI GGCC 3 cut(s) 187, 294, 687
BspCNI CTCAG 2 cut(s) 174, 558
BspHI TCATGA 1 cut(s) 750
BspPI GGATC 1 cut(s) 681
BspT104I TTCGAA 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 122
BsrFI RCCGGY 2 cut(s) 131, 522
BsrI ACTGG 1 cut(s) 326
BssAI RCCGGY 2 cut(s) 131, 522
BssMI GATC 3 cut(s) 393, 631, 673
BssNI GRCGYC 1 cut(s) 526
Bst2UI CCWGG 3 cut(s) 68, 102, 655
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 2 cut(s) 134, 146
BstACI GRCGYC 1 cut(s) 526
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 58, 496
BstDEI CTNAG 5 cut(s) 182, 253, 335, 464, 566
BstF5I GGATG 3 cut(s) 246, 410, 433
BstKTI GATC 3 cut(s) 396, 634, 676
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 3 cut(s) 393, 631, 673
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 3 cut(s) 68, 102, 655
BstPAI GACNNNNGTC 1 cut(s) 429
BstSCI CCNGG 6 cut(s) 66, 100, 187, 289, 571, 653
BstV1I GCAGC 1 cut(s) 786
BstV2I GAAGAC 2 cut(s) 69, 522
BstX2I RGATCY 1 cut(s) 673
BstXI CCANNNNNNTGG 1 cut(s) 108
BstYI RGATCY 1 cut(s) 673
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 3 cut(s) 187, 294, 687
BtgZI GCGATG 2 cut(s) 468, 513
BtsCI GGATG 3 cut(s) 246, 410, 433
BtsIMutI CAGTG 1 cut(s) 563
Cac8I GCNNGC 2 cut(s) 58, 496
CciI TCATGA 1 cut(s) 750
Cfr10I RCCGGY 2 cut(s) 131, 522
Cfr13I GGNCC 3 cut(s) 98, 186, 292
CseI GACGC 1 cut(s) 515
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 3 cut(s) 10, 543, 549
CspAI ACCGGT 1 cut(s) 131
CviAII CATG 2 cut(s) 751, 781
CviJI RGCY 4 cut(s) 187, 294, 687, 748
CviKI_1 RGCY 4 cut(s) 187, 294, 687, 748
CviQI GTAC 3 cut(s) 10, 543, 549
DdeI CTNAG 5 cut(s) 182, 253, 335, 464, 566
DpnI GATC 3 cut(s) 395, 633, 675
DpnII GATC 3 cut(s) 393, 631, 673
Eam1104I CTCTTC 2 cut(s) 134, 146
EarI CTCTTC 2 cut(s) 134, 146
Eco24I GRGCYC 1 cut(s) 750
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 98
Eco81I CCTNAGG 1 cut(s) 182
EcoRI GAATTC 2 cut(s) 325, 704
EcoRII CCWGG 3 cut(s) 66, 100, 653
EcoT38I GRGCYC 1 cut(s) 750
FaeI CATG 2 cut(s) 754, 784
FaiI YATR 6 cut(s) 642, 650, 698, 752, 782, 789
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 1 cut(s) 555
FatI CATG 2 cut(s) 750, 780
FauI CCCGC 1 cut(s) 590
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 775
FokI GGATG 3 cut(s) 253, 397, 420
FriOI GRGCYC 1 cut(s) 750
Fsp4HI GCNGC 1 cut(s) 775
FspBI CTAG 1 cut(s) 546
GluI GCNGC 1 cut(s) 775
HaeIII GGCC 3 cut(s) 187, 294, 687
HapII CCGG 5 cut(s) 132, 189, 290, 523, 573
HgaI GACGC 1 cut(s) 515
Hin1I GRCGYC 1 cut(s) 526
Hin1II CATG 2 cut(s) 754, 784
HinfI GANTC 6 cut(s) 286, 368, 568, 582, 662, 737
HpaII CCGG 5 cut(s) 132, 189, 290, 523, 573
Hpy188I TCNGA 6 cut(s) 373, 593, 678, 703, 742, 767
Hpy188III TCNNGA 4 cut(s) 196, 238, 381, 751
Hpy99I CGWCG 2 cut(s) 428, 730
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 3 cut(s) 84, 345, 728
HpyCH4V TGCA 2 cut(s) 244, 774
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 5 cut(s) 182, 253, 335, 464, 566
HpySE526I ACGT 3 cut(s) 84, 345, 728
Hsp92I GRCGYC 1 cut(s) 526
Hsp92II CATG 2 cut(s) 754, 784
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 3 cut(s) 393, 631, 673
Lsp1109I GCAGC 1 cut(s) 786
LweI GCATC 2 cut(s) 128, 231
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 1 cut(s) 546
MaeII ACGT 3 cut(s) 84, 345, 728
MaeIII GTNAC 1 cut(s) 716
MalI GATC 3 cut(s) 395, 633, 675
MboI GATC 3 cut(s) 393, 631, 673
MboII GAAGA 9 cut(s) 49, 74, 151, 163, 227, 352, 365, 524, 527
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 1 cut(s) 750
MluCI AATT 7 cut(s) 175, 325, 637, 704, 754, 784, 802
MlyI GAGTC 2 cut(s) 577, 591
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 5 cut(s) 132, 189, 290, 523, 573
MspR9I CCNGG 6 cut(s) 68, 102, 189, 291, 573, 655
MvaI CCWGG 3 cut(s) 68, 102, 655
MwoI GCNNNNNNNGC 1 cut(s) 53
NciI CCSGG 3 cut(s) 189, 291, 573
NdeII GATC 3 cut(s) 393, 631, 673
NlaIII CATG 2 cut(s) 754, 784
NmuCI GTSAC 1 cut(s) 716
NspV TTCGAA 1 cut(s) 21
PagI TCATGA 1 cut(s) 750
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PfeI GAWTC 4 cut(s) 286, 368, 662, 737
PflFI GACNNNGTC 1 cut(s) 83
PfoI TCCNGGA 1 cut(s) 571
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 1 cut(s) 776
PleI GAGTC 2 cut(s) 576, 590
PpsI GAGTC 2 cut(s) 576, 590
PshAI GACNNNNGTC 1 cut(s) 429
PsiI TTATAA 1 cut(s) 642
Psp6I CCWGG 3 cut(s) 66, 100, 653
PspGI CCWGG 3 cut(s) 66, 100, 653
PspPI GGNCC 3 cut(s) 98, 186, 292
PsuI RGATCY 1 cut(s) 673
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 3 cut(s) 11, 544, 550
RsaNI GTAC 3 cut(s) 10, 543, 549
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 775
Sau3AI GATC 3 cut(s) 393, 631, 673
Sau96I GGNCC 3 cut(s) 98, 186, 292
SchI GAGTC 2 cut(s) 577, 591
ScrFI CCNGG 6 cut(s) 68, 102, 189, 291, 573, 655
SduI GDGCHC 1 cut(s) 750
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 2 cut(s) 128, 231
SfuI TTCGAA 1 cut(s) 21
SgrAI CRCCGGYG 1 cut(s) 522
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 7 cut(s) 175, 325, 637, 704, 754, 784, 802
SsiI CCGC 1 cut(s) 597
SspMI CTAG 1 cut(s) 546
StyD4I CCNGG 6 cut(s) 66, 100, 187, 289, 571, 653
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 3 cut(s) 87, 348, 731
TaqI TCGA 6 cut(s) 21, 380, 585, 665, 693, 725
TasI AATT 7 cut(s) 175, 325, 637, 704, 754, 784, 802
TfiI GAWTC 4 cut(s) 286, 368, 662, 737
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 1 cut(s) 570
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 1 cut(s) 774
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 5 cut(s) 234, 321, 471, 767, 797
TspRI CASTG 1 cut(s) 570
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 3 cut(s) 325, 704, 754
XspI CTAG 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.