pycom09g05230

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000405
Physical Location & Seq
Reverse (-)
3889953 .. 3893173
3221 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g05230.2

Sequence Viewer

Length: 861 bp
ATGGACGTTGCATTTGCTGCCCGGACGAATGAAGGGAATGAAGAAGCAGCTTGCCTAATCATTTTGTATTTGCTATTCACGCTGCTACTTGGAAGTTCAGCGGAAAAACTACCTTGGAGTTTTGCCAAAAGATGTAACTCAATAGCGAGCATCAAGCAATACAACTGGGCAAAAGAAATAGCAAGGTACTTAGTGAAAGGTATTGACAGAGCCCAAAGCAGGAAAAAGGATAAACAACGAACTGTTAGTGGTTCTGTTGTCCTTTTAATGTATTGGGTATGTGATCGCACCAACATCATCAAACCAAAGGCAGGAAAGGAGAACAGCCTACCAACAGCAATCAAGTGGGATTTGTCAGCTCTCCATAATAAAATCCATAAAAATACAGATGAAAAGTTGGAGTCTGAACGAAAAGAACATGACGTAGATGTCGGAGGGGCGCCCCATATGATCGTCATAGACAATCTTGAGAAGGAGTTATCGCCATCAACAATTATGGAGTTTATCCATCAACAACTTTCAATCTCATGTCAAGCATTTGTTTCGCCAAGTAAGTTGTTAGAGATGTATGCACGAGGAGCTGTTCTGTTGCACAGCAAACGGAACTTTGACAAATTATTGGCGTTTTTGGAGAATCCAGATCACATCATCGTTTCCTCAGGAGGAAGGTATACAGTAGTATCACAGGGCAGAACCGGAACTTGCAACGAATTGAAGGTTGTCGTTTCTGGGACGAAAGAGTACGAGCAAGCCAAGCAGCTACATGATTTGTTTAAGCAATTTGCAAAGCATCAATGTATGCTTCACCAGAGGTTAGTTATTGAAGAGGGAAGGATTTTGCAGCCATCTGATCCGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

287

Amino Acids

32.35

Weight (kDa)

8.9

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 428
AccB1I GGYRCC 1 cut(s) 439
AccI GTMKAC 1 cut(s) 671
AciI CCGC 2 cut(s) 101, 854
AclWI GGATC 1 cut(s) 845
AcyI GRCGYC 1 cut(s) 440
AfaI GTAC 2 cut(s) 188, 743
AfiI CCNNNNNNNGG 2 cut(s) 219, 311
AgsI TTSAA 3 cut(s) 522, 715, 824
AluBI AGCT 4 cut(s) 50, 359, 581, 760
AluI AGCT 4 cut(s) 50, 359, 581, 760
AlwI GGATC 1 cut(s) 845
ApeKI GCWGC 5 cut(s) 17, 47, 82, 757, 841
ArsI GACNNNNNNTTYG 1 cut(s) 28
AspLEI GCGC 1 cut(s) 442
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 797
AxyI CCTNAGG 1 cut(s) 658
BaeI ACNNNNGTAYC 2 cut(s) 663, 696
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 214
BauI CACGAG 1 cut(s) 573
BbvI GCAGC 5 cut(s) 4, 59, 69, 769, 853
BccI CCATC 3 cut(s) 493, 516, 853
BcgI CGANNNNNNTGC 2 cut(s) 525, 559
BcnI CCSGG 1 cut(s) 22
BfmI CTRYAG 1 cut(s) 857
BfoI RGCGCY 1 cut(s) 443
BisI GCNGC 5 cut(s) 18, 48, 83, 758, 842
BlsI GCNGC 5 cut(s) 19, 49, 84, 759, 843
Bme1390I CCNGG 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 1 cut(s) 22
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 2 cut(s) 159, 799
BmuI ACTGGG 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 488
BpuMI CCSGG 1 cut(s) 22
BsaHI GRCGYC 1 cut(s) 440
BsaJI CCNNGG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 695
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 311
Bse1I ACTGG 1 cut(s) 170
Bse21I CCTNAGG 1 cut(s) 658
BseDI CCNNGG 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 219, 311
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 591
BseXI GCAGC 5 cut(s) 4, 59, 69, 769, 853
BshNI GGYRCC 1 cut(s) 439
BsiSI CCGG 2 cut(s) 22, 696
BslFI GGGAC 1 cut(s) 745
BslI CCNNNNNNNGG 2 cut(s) 219, 311
BsmFI GGGAC 1 cut(s) 745
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 4 cut(s) 283, 450, 640, 850
BspACI CCGC 2 cut(s) 101, 854
BspCNI CTCAG 1 cut(s) 671
BspLI GGNNCC 1 cut(s) 441
BspPI GGATC 1 cut(s) 845
BspT107I GGYRCC 1 cut(s) 439
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 4 cut(s) 283, 450, 640, 850
BssNAI GTATAC 1 cut(s) 672
BssNI GRCGYC 1 cut(s) 440
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 113
Bst1107I GTATAC 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 573
Bst4CI ACNGT 2 cut(s) 244, 676
Bst6I CTCTTC 1 cut(s) 819
BstACI GRCGYC 1 cut(s) 440
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 52, 148, 750
BstDEI CTNAG 2 cut(s) 190, 658
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 4 cut(s) 286, 453, 643, 853
BstMBI GATC 4 cut(s) 283, 450, 640, 850
BstMWI GCNNNNNNNGC 4 cut(s) 17, 79, 578, 754
BstSCI CCNGG 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 857
BstV1I GCAGC 5 cut(s) 4, 59, 69, 769, 853
BstZ17I GTATAC 1 cut(s) 672
Bsu36I CCTNAGG 1 cut(s) 658
Cac8I GCNNGC 3 cut(s) 52, 148, 750
CfoI GCGC 1 cut(s) 442
Csp6I GTAC 2 cut(s) 187, 742
CviAII CATG 3 cut(s) 419, 528, 764
CviJI RGCY 8 cut(s) 50, 212, 327, 359, 581, 752, 760, 844
CviKI_1 RGCY 8 cut(s) 50, 212, 327, 359, 581, 752, 760, 844
CviQI GTAC 2 cut(s) 187, 742
DdeI CTNAG 2 cut(s) 190, 658
DinI GGCGCC 1 cut(s) 441
DpnI GATC 4 cut(s) 285, 452, 642, 852
DpnII GATC 4 cut(s) 283, 450, 640, 850
DrdI GACNNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 1 cut(s) 428
Eam1104I CTCTTC 1 cut(s) 819
EarI CTCTTC 1 cut(s) 819
Eco130I CCWWGG 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 214
Eco81I CCTNAGG 1 cut(s) 658
EcoT14I CCWWGG 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 214
EgeI GGCGCC 1 cut(s) 441
EheI GGCGCC 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 3 cut(s) 422, 531, 767
FaqI GGGAC 1 cut(s) 745
FatI CATG 3 cut(s) 418, 527, 763
FauNDI CATATG 1 cut(s) 447
FblI GTMKAC 1 cut(s) 671
Fnu4HI GCNGC 5 cut(s) 18, 48, 83, 758, 842
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 5 cut(s) 18, 48, 83, 758, 842
GlaI GCGC 1 cut(s) 441
GluI GCNGC 5 cut(s) 18, 48, 83, 758, 842
HaeII RGCGCY 1 cut(s) 443
HapII CCGG 2 cut(s) 22, 696
HhaI GCGC 1 cut(s) 442
Hin1I GRCGYC 1 cut(s) 440
Hin1II CATG 3 cut(s) 422, 531, 767
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HinfI GANTC 2 cut(s) 401, 634
HpaII CCGG 2 cut(s) 22, 696
HphI GGTGA 1 cut(s) 797
Hpy166II GTNNAC 1 cut(s) 672
Hpy188I TCNGA 3 cut(s) 406, 434, 850
Hpy188III TCNNGA 3 cut(s) 467, 638, 660
Hpy8I GTNNAC 1 cut(s) 672
HpyAV CCTTC 5 cut(s) 26, 466, 660, 709, 825
HpyCH4III ACNGT 2 cut(s) 244, 676
HpyCH4IV ACGT 2 cut(s) 6, 423
HpyCH4V TGCA 6 cut(s) 11, 572, 592, 705, 785, 841
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 79, 578, 754
HpyF3I CTNAG 2 cut(s) 190, 658
HpySE526I ACGT 2 cut(s) 6, 423
Hsp92I GRCGYC 1 cut(s) 440
Hsp92II CATG 3 cut(s) 422, 531, 767
HspAI GCGC 1 cut(s) 440
KasI GGCGCC 1 cut(s) 439
Kzo9I GATC 4 cut(s) 283, 450, 640, 850
LmnI GCTCC 1 cut(s) 578
Lsp1109I GCAGC 5 cut(s) 4, 59, 69, 769, 853
LweI GCATC 2 cut(s) 159, 799
MaeII ACGT 2 cut(s) 6, 423
MaeIII GTNAC 1 cut(s) 134
MalI GATC 4 cut(s) 285, 452, 642, 852
MboI GATC 4 cut(s) 283, 450, 640, 850
MboII GAAGA 2 cut(s) 53, 836
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 4 cut(s) 492, 614, 710, 779
Mly113I GGCGCC 1 cut(s) 440
MlyI GAGTC 1 cut(s) 410
MmeI TCCRAC 2 cut(s) 378, 412
MnlI CCTC 6 cut(s) 428, 569, 656, 667, 804, 820
MseI TTAA 2 cut(s) 266, 774
MspA1I CMGCKG 2 cut(s) 101, 856
MspI CCGG 2 cut(s) 22, 696
MspR9I CCNGG 1 cut(s) 22
MwoI GCNNNNNNNGC 4 cut(s) 17, 79, 578, 754
NarI GGCGCC 1 cut(s) 440
NciI CCSGG 1 cut(s) 22
NdeI CATATG 1 cut(s) 447
NdeII GATC 4 cut(s) 283, 450, 640, 850
NlaIII CATG 3 cut(s) 422, 531, 767
NlaIV GGNNCC 1 cut(s) 441
PfeI GAWTC 1 cut(s) 634
PkrI GCNGC 5 cut(s) 19, 49, 84, 759, 843
PleI GAGTC 1 cut(s) 409
PluTI GGCGCC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 441
RsaI GTAC 2 cut(s) 188, 743
RsaNI GTAC 2 cut(s) 187, 742
SaqAI TTAA 2 cut(s) 266, 774
SatI GCNGC 5 cut(s) 18, 48, 83, 758, 842
Sau3AI GATC 4 cut(s) 283, 450, 640, 850
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 1 cut(s) 214
SfaNI GCATC 2 cut(s) 159, 799
SfcI CTRYAG 1 cut(s) 857
SfoI GGCGCC 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 4 cut(s) 492, 614, 710, 779
SsiI CCGC 2 cut(s) 101, 854
SspDI GGCGCC 1 cut(s) 439
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 244, 676
TaiI ACGT 2 cut(s) 9, 426
TasI AATT 4 cut(s) 492, 614, 710, 779
TfiI GAWTC 1 cut(s) 634
Tru1I TTAA 2 cut(s) 266, 774
Tru9I TTAA 2 cut(s) 266, 774
TseI GCWGC 5 cut(s) 17, 47, 82, 757, 841
TspDTI ATGAA 3 cut(s) 45, 54, 405
TspGWI ACGGA 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.