pycom09g05240

SAWADEE domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
3896262 .. 3903609
7348 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g05240.6

Sequence Viewer

Length: 1206 bp
ATGGCGGTGGAGTTCAGGTCTGGCTTGGACGACGCCTGGTACGACGTCCTGATAGCGAACGACGCCTGTGATCGACTGAGAGTGAAGTTCGTCGGCTTCGGCGACGACCATGACGAGCTTTATGAAGTGAGCGAGTTGAGTTCGTTCAACGACATCGACGAGTTCAGCCGGAGGTTCAGGCCGTTGTCCGTACAAGTTCAGGACACGGATTGCTCTCAGGTGGTGAAGGGCATGCTCGTCTGTGCCTCTCACTCCATTCGCCGCGGTGATCGCCGCTTCTACGACGCCGTTATCAAAAAGGTGGTGCATGAGGAACATCGGTTTGTAAAAGGAGAGGAAGAATGTTCATGCAGCTTCATCCTCTTTTGGAGACACGGTCCAAAAGCAGGGTCTTTAACCGCTCAATCTCTCGATACCATTTGCAGAGTCCAGCCTCGTACAAACAAAATGCATCCGCTTTTGAACTCTTTTCTAAAAACAGCCAGGGAGAAAATTGAAACCACTCTTTCTAATATTTCGACAATTCCTCGTGAAGTTGCTTATGACGCAAAAACTTGTACGCCCAACTATAGGCACAAGTTAAGCCTTTCTCTAAGTATAAACAAGGACAAAAGAACTTCAAGGCGACCCTTAAGTCTCATCTCGTCTCTTAAAGATGGGATTGTCAATCCTTCTCAGGGGGCTGGGCACGACATGGATGTAGAAGAGGTTCCCTATGTAATGACCATTGAGAATCTGGAGAAGGGGTTATCACCATTAAAGATCGTGGAATTTATACATCAACAACTTTCAATCTCATGTCAAGCATTTGTTTCACCAAGTCTGTCATCTGAGTGGTATACACGAGGAATCATCCTGCTGGATAGCAGAAAGAATGTTGACAAGTTATCCGACTTTTTGGAGAGTCCCGATCACATCATTATTTCTTCAAGCGGAAGGCCTTGGGTCATGACTGAGAAAAGACGAGCACATGACAGACTAAGGGGTTCAATCGTAAACTCCATGCTTATATCGCAGAAACTACTAGAGCGTAGAAGAACAAATACTTGCAACGAATTGAAAGTGGTCAGTTCTGGAACTGAAGAATACATGAGAGGCAAGCTTCTGCAAGATTTATTTTGTGAGTATTCTAATCAGCAACACCGGCTTCACCAGAAGTTACTTGTCGAAGAGGGAAAGATCTGGCAGCTATTTAACGCAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

402

Amino Acids

45.97

Weight (kDa)

8.0

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 633
AatII GACGTC 1 cut(s) 48
AccBSI CCGCTC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 839
AccII CGCG 1 cut(s) 264
AciI CCGC 7 cut(s) 5, 262, 264, 274, 399, 455, 933
AcsI RAATTY 1 cut(s) 770
AcuI CTGAAG 1 cut(s) 1101
AcyI GRCGYC 4 cut(s) 33, 45, 63, 285
AfaI GTAC 4 cut(s) 41, 192, 439, 559
AfiI CCNNNNNNNGG 3 cut(s) 386, 570, 677
AflII CTTAAG 1 cut(s) 631
AgsI TTSAA 8 cut(s) 148, 463, 497, 621, 792, 930, 990, 1060
AjnI CCWGG 2 cut(s) 35, 482
AluBI AGCT 4 cut(s) 118, 354, 1102, 1189
AluI AGCT 4 cut(s) 118, 354, 1102, 1189
Alw21I GWGCWC 1 cut(s) 970
Alw26I GTCTC 3 cut(s) 364, 641, 651
AoxI GGCC 2 cut(s) 179, 938
ApeKI GCWGC 3 cut(s) 351, 1186, 1199
ApoI RAATTY 1 cut(s) 770
ArsI GACNNNNNNTTYG 2 cut(s) 374, 406
Asp700I GAANNNNTTC 1 cut(s) 708
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 5 cut(s) 235, 278, 744, 807, 1142
AvaII GGWCC 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 690
BarI GAAGNNNNNNTAC 2 cut(s) 1027, 1059
BauI CACGAG 2 cut(s) 528, 843
Bbv12I GWGCWC 1 cut(s) 970
BbvI GCAGC 2 cut(s) 363, 1198
BccI CCATC 1 cut(s) 650
BceAI ACGGC 2 cut(s) 166, 272
BciT130I CCWGG 2 cut(s) 37, 484
BcoDI GTCTC 3 cut(s) 364, 641, 651
BfaI CTAG 1 cut(s) 1025
BfmI CTRYAG 1 cut(s) 568
BfrI CTTAAG 1 cut(s) 631
BglII AGATCT 1 cut(s) 1179
BisI GCNGC 5 cut(s) 262, 274, 352, 1187, 1200
BlsI GCNGC 5 cut(s) 263, 275, 353, 1188, 1201
Bme1390I CCNGG 2 cut(s) 37, 484
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 711
BmrFI CCNGG 2 cut(s) 37, 484
BmsI GCATC 1 cut(s) 460
BpmI CTGGAG 1 cut(s) 758
BsaHI GRCGYC 4 cut(s) 33, 45, 63, 285
BsaJI CCNNGG 3 cut(s) 262, 483, 941
BsaXI ACNNNNNCTCC 5 cut(s) 32, 361, 391, 731, 761
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 570, 677
Bse118I RCCGGY 1 cut(s) 1143
BseBI CCWGG 2 cut(s) 37, 484
BseDI CCNNGG 3 cut(s) 262, 483, 941
BseGI GGATG 4 cut(s) 357, 451, 703, 852
BseLI CCNNNNNNNGG 3 cut(s) 386, 570, 677
BseMII CTCAG 5 cut(s) 68, 230, 689, 822, 945
BseSI GKGCMC 1 cut(s) 690
BseXI GCAGC 2 cut(s) 363, 1198
BseYI CCCAGC 1 cut(s) 683
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 2 cut(s) 181, 940
BsiHKAI GWGCWC 1 cut(s) 970
BsiSI CCGG 2 cut(s) 169, 1144
BslFI GGGAC 1 cut(s) 891
BslI CCNNNNNNNGG 3 cut(s) 386, 570, 677
BsmAI GTCTC 3 cut(s) 364, 641, 651
BsmBI CGTCTC 1 cut(s) 651
BsmFI GGGAC 1 cut(s) 891
BsnI GGCC 2 cut(s) 181, 940
Bsp1286I GDGCHC 2 cut(s) 690, 970
Bsp143I GATC 5 cut(s) 70, 268, 762, 910, 1179
BspACI CCGC 7 cut(s) 5, 262, 264, 274, 399, 455, 933
BspANI GGCC 2 cut(s) 181, 940
BspCNI CTCAG 5 cut(s) 69, 229, 688, 823, 946
BspFNI CGCG 1 cut(s) 264
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 1 cut(s) 711
BspTI CTTAAG 1 cut(s) 631
BsrBI CCGCTC 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 1143
BssAI RCCGGY 1 cut(s) 1143
BssECI CCNNGG 3 cut(s) 262, 483, 941
BssMI GATC 5 cut(s) 70, 268, 762, 910, 1179
BssNAI GTATAC 1 cut(s) 840
BssNI GRCGYC 4 cut(s) 33, 45, 63, 285
BssSI CACGAG 2 cut(s) 528, 843
BssT1I CCWWGG 1 cut(s) 941
Bst1107I GTATAC 1 cut(s) 840
Bst2BI CACGAG 2 cut(s) 528, 843
Bst2UI CCWGG 2 cut(s) 37, 484
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 699, 1164
BstACI GRCGYC 4 cut(s) 33, 45, 63, 285
BstAFI CTTAAG 1 cut(s) 631
BstC8I GCNNGC 2 cut(s) 233, 1100
BstDEI CTNAG 7 cut(s) 77, 216, 593, 675, 831, 954, 980
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 4 cut(s) 357, 451, 703, 852
BstFNI CGCG 1 cut(s) 264
BstKTI GATC 5 cut(s) 73, 271, 765, 913, 1182
BstMAI GTCTC 3 cut(s) 364, 641, 651
BstMBI GATC 5 cut(s) 70, 268, 762, 910, 1179
BstMWI GCNNNNNNNGC 5 cut(s) 62, 270, 545, 1012, 1144
BstNI CCWGG 2 cut(s) 37, 484
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 2 cut(s) 35, 482
BstSFI CTRYAG 1 cut(s) 568
BstSLI GKGCMC 1 cut(s) 690
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 363, 1198
BstX2I RGATCY 1 cut(s) 1179
BstYI RGATCY 1 cut(s) 1179
BstZ17I GTATAC 1 cut(s) 840
BsuRI GGCC 2 cut(s) 181, 940
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 4 cut(s) 357, 451, 703, 852
Cac8I GCNNGC 2 cut(s) 233, 1100
CciI TCATGA 1 cut(s) 948
Cfr10I RCCGGY 1 cut(s) 1143
Cfr13I GGNCC 1 cut(s) 377
Cfr42I CCGCGG 1 cut(s) 265
CseI GACGC 4 cut(s) 41, 71, 293, 554
Csp6I GTAC 4 cut(s) 40, 191, 438, 558
CviQI GTAC 4 cut(s) 40, 191, 438, 558
DdeI CTNAG 7 cut(s) 77, 216, 593, 675, 831, 954, 980
DpnI GATC 5 cut(s) 72, 270, 764, 912, 1181
DpnII GATC 5 cut(s) 70, 268, 762, 910, 1179
DrdI GACNNNNNNGTC 1 cut(s) 633
DseDI GACNNNNNNGTC 1 cut(s) 633
Eam1104I CTCTTC 2 cut(s) 699, 1164
EarI CTCTTC 2 cut(s) 699, 1164
Eco130I CCWWGG 1 cut(s) 941
Eco147I AGGCCT 1 cut(s) 940
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 1101
EcoRII CCWGG 2 cut(s) 35, 482
EcoT14I CCWWGG 1 cut(s) 941
EcoT22I ATGCAT 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 941
Esp3I CGTCTC 1 cut(s) 651
FaqI GGGAC 1 cut(s) 891
FblI GTMKAC 1 cut(s) 839
Fnu4HI GCNGC 5 cut(s) 262, 274, 352, 1187, 1200
FokI GGATG 4 cut(s) 344, 438, 710, 839
Fsp4HI GCNGC 5 cut(s) 262, 274, 352, 1187, 1200
FspBI CTAG 1 cut(s) 1025
GluI GCNGC 5 cut(s) 262, 274, 352, 1187, 1200
GsaI CCCAGC 1 cut(s) 687
GsuI CTGGAG 1 cut(s) 758
HaeIII GGCC 2 cut(s) 181, 940
HapII CCGG 2 cut(s) 169, 1144
HgaI GACGC 4 cut(s) 41, 71, 293, 554
Hin1I GRCGYC 4 cut(s) 33, 45, 63, 285
HincII GTYRAC 1 cut(s) 880
HindII GTYRAC 1 cut(s) 880
HindIII AAGCTT 1 cut(s) 1100
HinfI GANTC 4 cut(s) 426, 733, 849, 904
HpaII CCGG 2 cut(s) 169, 1144
HphI GGTGA 5 cut(s) 235, 278, 744, 807, 1142
Hpy166II GTNNAC 3 cut(s) 840, 880, 997
Hpy188I TCNGA 2 cut(s) 832, 892
Hpy188III TCNNGA 8 cut(s) 49, 200, 410, 530, 737, 908, 949, 1074
Hpy8I GTNNAC 3 cut(s) 840, 880, 997
Hpy99I CGWCG 7 cut(s) 35, 47, 65, 95, 107, 161, 287
HpyAV CCTTC 4 cut(s) 220, 681, 736, 930
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 6 cut(s) 307, 351, 423, 451, 1050, 1108
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 270, 545, 1012, 1144
HpyF3I CTNAG 7 cut(s) 77, 216, 593, 675, 831, 954, 980
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 4 cut(s) 33, 45, 63, 285
KspI CCGCGG 1 cut(s) 265
Kzo9I GATC 5 cut(s) 70, 268, 762, 910, 1179
Lsp1109I GCAGC 2 cut(s) 363, 1198
LweI GCATC 1 cut(s) 460
MaeI CTAG 1 cut(s) 1025
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 1158
MalI GATC 5 cut(s) 72, 270, 764, 912, 1181
MbiI CCGCTC 1 cut(s) 401
MboI GATC 5 cut(s) 70, 268, 762, 910, 1179
MboII GAAGA 6 cut(s) 350, 716, 918, 1047, 1094, 1181
MflI RGATCY 1 cut(s) 1179
MhlI GDGCHC 2 cut(s) 690, 970
MluCI AATT 4 cut(s) 492, 522, 770, 1055
MlyI GAGTC 2 cut(s) 435, 913
MmeI TCCRAC 1 cut(s) 915
Mph1103I ATGCAT 1 cut(s) 453
MroXI GAANNNNTTC 1 cut(s) 708
MseI TTAA 6 cut(s) 395, 581, 632, 651, 758, 1194
MslI CAYNNNNRTG 1 cut(s) 832
MspA1I CMGCKG 1 cut(s) 264
MspCI CTTAAG 1 cut(s) 631
MspI CCGG 2 cut(s) 169, 1144
MspR9I CCNGG 2 cut(s) 37, 484
MvaI CCWGG 2 cut(s) 37, 484
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 5 cut(s) 62, 270, 545, 1012, 1144
NdeII GATC 5 cut(s) 70, 268, 762, 910, 1179
NlaIV GGNNCC 1 cut(s) 711
NsiI ATGCAT 1 cut(s) 453
NspI RCATGY 1 cut(s) 235
PaeI GCATGC 1 cut(s) 235
PagI TCATGA 1 cut(s) 948
PceI AGGCCT 1 cut(s) 940
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 99, 111, 156
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 2 cut(s) 733, 849
PflFI GACNNNGTC 1 cut(s) 375
PkrI GCNGC 5 cut(s) 263, 275, 353, 1188, 1201
PleI GAGTC 2 cut(s) 434, 912
PpsI GAGTC 2 cut(s) 434, 912
Psp6I CCWGG 2 cut(s) 35, 482
PspFI CCCAGC 1 cut(s) 683
PspGI CCWGG 2 cut(s) 35, 482
PspN4I GGNNCC 1 cut(s) 711
PspPI GGNCC 1 cut(s) 377
PsrI GAACNNNNNNTAC 2 cut(s) 693, 725
PsuI RGATCY 1 cut(s) 1179
PsyI GACNNNGTC 1 cut(s) 375
RsaI GTAC 4 cut(s) 41, 192, 439, 559
RsaNI GTAC 4 cut(s) 40, 191, 438, 558
RseI CAYNNNNRTG 1 cut(s) 832
SacII CCGCGG 1 cut(s) 265
SaqAI TTAA 6 cut(s) 395, 581, 632, 651, 758, 1194
SatI GCNGC 5 cut(s) 262, 274, 352, 1187, 1200
Sau3AI GATC 5 cut(s) 70, 268, 762, 910, 1179
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 2 cut(s) 435, 913
ScrFI CCNGG 2 cut(s) 37, 484
SduI GDGCHC 2 cut(s) 690, 970
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 1 cut(s) 568
Sfr303I CCGCGG 1 cut(s) 265
SgrBI CCGCGG 1 cut(s) 265
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 832
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
SphI GCATGC 1 cut(s) 235
Sse9I AATT 4 cut(s) 492, 522, 770, 1055
SseBI AGGCCT 1 cut(s) 940
SsiI CCGC 7 cut(s) 5, 262, 264, 274, 399, 455, 933
SspI AATATT 1 cut(s) 514
SspMI CTAG 1 cut(s) 1025
StuI AGGCCT 1 cut(s) 940
StyD4I CCNGG 2 cut(s) 35, 482
StyI CCWWGG 1 cut(s) 941
TaaI ACNGT 1 cut(s) 377
TaiI ACGT 1 cut(s) 48
TaqI TCGA 5 cut(s) 73, 156, 411, 518, 1167
TasI AATT 4 cut(s) 492, 522, 770, 1055
TauI GCSGC 2 cut(s) 264, 276
TfiI GAWTC 2 cut(s) 733, 849
Tru1I TTAA 6 cut(s) 395, 581, 632, 651, 758, 1194
Tru9I TTAA 6 cut(s) 395, 581, 632, 651, 758, 1194
TseI GCWGC 3 cut(s) 351, 1186, 1199
TspDTI ATGAA 3 cut(s) 138, 336, 346
TspGWI ACGGA 2 cut(s) 178, 221
Tth111I GACNNNGTC 1 cut(s) 375
Vha464I CTTAAG 1 cut(s) 631
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 1 cut(s) 770
XceI RCATGY 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 733
XmiI GTMKAC 1 cut(s) 839
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 1 cut(s) 1025
ZraI GACGTC 1 cut(s) 46
Zsp2I ATGCAT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.