RchiOBHm_Chr2g0155791

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000405
Physical Location & Seq
Forward (+)
72641648 .. 72644928
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52466

Sequence Viewer

Length: 513 bp
ATGGATGGACGAGATGACATGGATGTAGGAGGGGCTCCCTATATGGTAATAGTTGAGAACCTGGAGAAGGAAATATCACCGGTTACAATTATGGAATTTATACACCAGCAAGTTTCAATCACATGTCAAGTCTTTGTTTCGCCAAGTAAGTCATCGGAGTTGTATACACGTGCAATTATCCTATTAGACAACAAAAAGAATCTTGAGAAGTTATCCGACTTTTTGGAGAGTCCAGATCACATCATCATTTCCTCCATAGGAAGGCCTTGGCTCATGACAGAGAAAAGATCATTACCTGAGACACTAAGGGCATCAATCCAAACCTTATCTCAGATGGAATTGAAGACAAGAACTCTAAGTAACAATGAGTTGAATGTTGTCTTTTCTGGAAGTCACGAATACATGGAAGCTAAAGAGCAACAAAAATTGTTTAAAGAGTTCACTGAACACCAGTGTGGACTTCAGCGGAGGTTACAACTTGAAGAGGAAAAGATCTCAAAGAAGTACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

170

Amino Acids

19.71

Weight (kDa)

5.65

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 164
AciI CCGC 1 cut(s) 466
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 446
AcvI CACGTG 1 cut(s) 170
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 2 cut(s) 67, 261
AflIII ACRYGT 2 cut(s) 122, 167
AgeI ACCGGT 1 cut(s) 79
AgsI TTSAA 4 cut(s) 117, 343, 373, 482
AjnI CCWGG 1 cut(s) 60
AleI CACNNNNGTG 1 cut(s) 453
AluBI AGCT 1 cut(s) 410
AluI AGCT 1 cut(s) 410
Alw26I GTCTC 1 cut(s) 293
AoxI GGCC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 95
AsiGI ACCGGT 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 69
BanII GRGCYC 1 cut(s) 37
BbrPI CACGTG 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 350
BccI CCATC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 293
BglII AGATCT 1 cut(s) 492
Bme1390I CCNGG 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 266
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 261
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 451
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 10, 28
BseLI CCNNNNNNNGG 2 cut(s) 67, 261
BseMII CTCAG 2 cut(s) 288, 344
BseNI ACTGG 1 cut(s) 451
BshFI GGCC 1 cut(s) 265
BshTI ACCGGT 1 cut(s) 79
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 67, 261
BsmAI GTCTC 1 cut(s) 293
BsnI GGCC 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 3 cut(s) 235, 287, 492
BspACI CCGC 1 cut(s) 466
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 2 cut(s) 289, 343
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 3 cut(s) 235, 287, 492
BssNAI GTATAC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 266
Bst1107I GTATAC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 477
BstBAI YACGTR 1 cut(s) 170
BstDEI CTNAG 4 cut(s) 297, 305, 330, 356
BstENI CCTNNNNNAGG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 10, 28
BstKTI GATC 3 cut(s) 238, 290, 495
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 3 cut(s) 235, 287, 492
BstNI CCWGG 1 cut(s) 62
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BstZ17I GTATAC 1 cut(s) 165
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 2 cut(s) 10, 28
BtsIMutI CAGTG 2 cut(s) 441, 458
CciI TCATGA 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 79
Csp6I GTAC 1 cut(s) 505
CspAI ACCGGT 1 cut(s) 79
CviAII CATG 4 cut(s) 19, 123, 274, 403
CviJI RGCY 4 cut(s) 35, 265, 271, 410
CviKI_1 RGCY 4 cut(s) 35, 265, 271, 410
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 4 cut(s) 297, 305, 330, 356
DpnI GATC 3 cut(s) 237, 289, 494
DpnII GATC 3 cut(s) 235, 287, 492
DraI TTTAAA 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 266
Eco147I AGGCCT 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 446
Eco72I CACGTG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 4 cut(s) 22, 126, 277, 406
FatI CATG 4 cut(s) 18, 122, 273, 402
FblI GTMKAC 1 cut(s) 164
FokI GGATG 2 cut(s) 17, 35
FriOI GRGCYC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 1 cut(s) 265
HapII CCGG 1 cut(s) 80
Hin1II CATG 4 cut(s) 22, 126, 277, 406
HinfI GANTC 2 cut(s) 199, 229
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 3 cut(s) 165, 441, 458
Hpy188I TCNGA 3 cut(s) 157, 217, 333
Hpy188III TCNNGA 5 cut(s) 203, 233, 274, 387, 395
Hpy8I GTNNAC 3 cut(s) 165, 441, 458
HpyAV CCTTC 2 cut(s) 61, 255
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 173
HpyF3I CTNAG 4 cut(s) 297, 305, 330, 356
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 4 cut(s) 22, 126, 277, 406
Kzo9I GATC 3 cut(s) 235, 287, 492
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 9 cut(s) 47, 74, 93, 119, 246, 309, 372, 464, 493
LweI GCATC 1 cut(s) 320
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 4 cut(s) 82, 359, 392, 471
MalI GATC 3 cut(s) 237, 289, 494
MboI GATC 3 cut(s) 235, 287, 492
MboII GAAGA 2 cut(s) 355, 494
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 5 cut(s) 87, 95, 174, 338, 425
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 4 cut(s) 23, 262, 462, 478
MseI TTAA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 466
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
NdeII GATC 3 cut(s) 235, 287, 492
NlaIII CATG 4 cut(s) 22, 126, 277, 406
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 392
NspI RCATGY 1 cut(s) 126
OliI CACNNNNGTG 1 cut(s) 453
PagI TCATGA 1 cut(s) 273
PceI AGGCCT 1 cut(s) 265
PciI ACATGT 1 cut(s) 122
PfeI GAWTC 1 cut(s) 199
PinAI ACCGGT 1 cut(s) 79
PleI GAGTC 1 cut(s) 237
PmaCI CACGTG 1 cut(s) 170
PmlI CACGTG 1 cut(s) 170
PpsI GAGTC 1 cut(s) 237
Ppu21I YACGTR 1 cut(s) 170
PscI ACATGT 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 60
PspCI CACGTG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 432
Sau3AI GATC 3 cut(s) 235, 287, 492
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 37
SetI ASST 7 cut(s) 63, 172, 298, 326, 412, 473, 512
SfaNI GCATC 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 5 cut(s) 87, 95, 174, 338, 425
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 1 cut(s) 466
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 266
TaiI ACGT 1 cut(s) 172
TasI AATT 5 cut(s) 87, 95, 174, 338, 425
TatI WGTACW 1 cut(s) 504
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 2 cut(s) 448, 458
TseFI GTSAC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 392
TspRI CASTG 2 cut(s) 448, 458
XagI CCTNNNNNAGG 1 cut(s) 65
XapI RAATTY 1 cut(s) 95
XceI RCATGY 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.