MD09G1128800.v1.1

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000405
Physical Location & Seq
Reverse (-)
9951709 .. 9953227
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1128800.v1.1.491

Sequence Viewer

Length: 504 bp
ATGGCCATTGAGAATCTGGAGAAGGGGTTATCACCATTAAAGATCGTGGAATTTATACATCAACAACTTTCAATCTCATGTCAAGCATTTGTTTCACCAAGTCTGTCATCTGAGTGGTATACACGAGGAACCATCCTGCTGGATAGCAGAAAGAATGTTGACAAGTTATCCGACTTTTTGGAGAGTACCGATCACATCATTATTTCTGCAAGCGGAAGGCCTTGGGTCATGACTGAGAAAAGACGAGCACATGAGAGACTAAGGGGTTCAATCGTAAACTCCATGCTTATATCGCAGAAACTACTAGAGCGTAGAAGAACTAGTACTCGCAACGAATTGAAAGTGGTCAGTTCTGGAACTGAAGAATACATGAGAGCCAAGCTGCTGCAAGATTTATTTTGTGAGTATTCTAATCAGCAACGCCGGCTTCACCAGAAGTTACTTGTCGAAGAGGGAAAGATCTGGCAGCTATTTAACGCAGCATCGAAGACTAAACCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

168

Amino Acids

19.38

Weight (kDa)

9.73

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 119
AciI CCGC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 2 cut(s) 187, 325
AgsI TTSAA 3 cut(s) 72, 270, 340
AhlI ACTAGT 1 cut(s) 320
AluBI AGCT 2 cut(s) 382, 469
AluI AGCT 2 cut(s) 382, 469
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 250
AoxI GGCC 2 cut(s) 3, 218
ApeKI GCWGC 4 cut(s) 382, 385, 466, 479
ApoI RAATTY 1 cut(s) 50
AsuHPI GGTGA 3 cut(s) 24, 87, 422
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 307, 339
BauI CACGAG 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 4 cut(s) 369, 372, 478, 491
BccI CCATC 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 250
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 2 cut(s) 305, 321
BglII AGATCT 1 cut(s) 459
BisI GCNGC 4 cut(s) 383, 386, 467, 480
BlsI GCNGC 4 cut(s) 384, 387, 468, 481
BmcAI AGTACT 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 130
BmsI GCATC 1 cut(s) 491
BpiI GAAGAC 1 cut(s) 494
BpmI CTGGAG 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 221, 497
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bse118I RCCGGY 1 cut(s) 423
BseDI CCNNGG 2 cut(s) 221, 497
BseGI GGATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 102, 225
BseXI GCAGC 4 cut(s) 369, 372, 478, 491
BshFI GGCC 2 cut(s) 5, 220
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 1 cut(s) 424
BsmAI GTCTC 1 cut(s) 250
BsnI GGCC 2 cut(s) 5, 220
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 42, 190, 459
BspACI CCGC 1 cut(s) 213
BspANI GGCC 2 cut(s) 5, 220
BspCNI CTCAG 2 cut(s) 103, 226
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 423
BssAI RCCGGY 1 cut(s) 423
BssECI CCNNGG 2 cut(s) 221, 497
BssMI GATC 3 cut(s) 42, 190, 459
BssNAI GTATAC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 123
BssT1I CCWWGG 2 cut(s) 221, 497
Bst1107I GTATAC 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 123
Bst6I CTCTTC 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 211, 425
BstDEI CTNAG 3 cut(s) 111, 234, 260
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 3 cut(s) 45, 193, 462
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 3 cut(s) 42, 190, 459
BstMWI GCNNNNNNNGC 2 cut(s) 292, 424
BstV1I GCAGC 4 cut(s) 369, 372, 478, 491
BstV2I GAAGAC 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 459
BstXI CCANNNNNNTGG 1 cut(s) 139
BstYI RGATCY 1 cut(s) 459
BstZ17I GTATAC 1 cut(s) 120
BsuRI GGCC 2 cut(s) 5, 220
BtsCI GGATG 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 211, 425
CciI TCATGA 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 423
Csp6I GTAC 2 cut(s) 186, 324
CviAII CATG 5 cut(s) 78, 229, 251, 283, 370
CviJI RGCY 6 cut(s) 5, 220, 377, 382, 427, 469
CviKI_1 RGCY 6 cut(s) 5, 220, 377, 382, 427, 469
CviQI GTAC 2 cut(s) 186, 324
DdeI CTNAG 3 cut(s) 111, 234, 260
DpnI GATC 3 cut(s) 44, 192, 461
DpnII GATC 3 cut(s) 42, 190, 459
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 221, 497
Eco147I AGGCCT 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 381
EcoT14I CCWWGG 2 cut(s) 221, 497
ErhI CCWWGG 2 cut(s) 221, 497
FaeI CATG 5 cut(s) 81, 232, 254, 286, 373
FaiI YATR 8 cut(s) 56, 79, 120, 230, 252, 284, 290, 371
FatI CATG 5 cut(s) 77, 228, 250, 282, 369
FblI GTMKAC 1 cut(s) 119
Fnu4HI GCNGC 4 cut(s) 383, 386, 467, 480
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 4 cut(s) 383, 386, 467, 480
FspBI CTAG 2 cut(s) 305, 321
GluI GCNGC 4 cut(s) 383, 386, 467, 480
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 2 cut(s) 5, 220
HapII CCGG 1 cut(s) 424
Hin1II CATG 5 cut(s) 81, 232, 254, 286, 373
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 1 cut(s) 13
HpaII CCGG 1 cut(s) 424
HphI GGTGA 3 cut(s) 24, 87, 422
Hpy166II GTNNAC 3 cut(s) 120, 160, 277
Hpy188I TCNGA 2 cut(s) 112, 172
Hpy188III TCNNGA 3 cut(s) 17, 229, 354
Hpy8I GTNNAC 3 cut(s) 120, 160, 277
HpyAV CCTTC 2 cut(s) 16, 210
HpyCH4V TGCA 2 cut(s) 209, 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 424
HpyF3I CTNAG 3 cut(s) 111, 234, 260
Hsp92II CATG 5 cut(s) 81, 232, 254, 286, 373
KroI GCCGGC 1 cut(s) 423
KroNI GCCGGC 1 cut(s) 425
Kzo9I GATC 3 cut(s) 42, 190, 459
LpnPI CCDG 7 cut(s) 2, 125, 149, 339, 437, 446, 448
Lsp1109I GCAGC 4 cut(s) 369, 372, 478, 491
LweI GCATC 1 cut(s) 491
MaeI CTAG 2 cut(s) 305, 321
MaeIII GTNAC 1 cut(s) 438
MalI GATC 3 cut(s) 44, 192, 461
MboI GATC 3 cut(s) 42, 190, 459
MboII GAAGA 4 cut(s) 327, 374, 461, 499
MflI RGATCY 1 cut(s) 459
MhlI GDGCHC 1 cut(s) 250
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 50, 335
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 2 cut(s) 119, 445
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 423
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 38, 474
MslI CAYNNNNRTG 1 cut(s) 112
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 424
MwoI GCNNNNNNNGC 2 cut(s) 292, 424
NaeI GCCGGC 1 cut(s) 425
NdeII GATC 3 cut(s) 42, 190, 459
NgoMIV GCCGGC 1 cut(s) 423
NlaIII CATG 5 cut(s) 81, 232, 254, 286, 373
NlaIV GGNNCC 1 cut(s) 130
PagI TCATGA 1 cut(s) 228
PceI AGGCCT 1 cut(s) 220
PdiI GCCGGC 1 cut(s) 425
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 4 cut(s) 384, 387, 468, 481
PspN4I GGNNCC 1 cut(s) 130
PsuI RGATCY 1 cut(s) 459
RsaI GTAC 2 cut(s) 187, 325
RsaNI GTAC 2 cut(s) 186, 324
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 2 cut(s) 38, 474
SatI GCNGC 4 cut(s) 383, 386, 467, 480
Sau3AI GATC 3 cut(s) 42, 190, 459
ScaI AGTACT 1 cut(s) 325
SduI GDGCHC 1 cut(s) 250
SetI ASST 3 cut(s) 384, 471, 503
SfaNI GCATC 1 cut(s) 491
SmiMI CAYNNNNRTG 1 cut(s) 112
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 2 cut(s) 50, 335
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 1 cut(s) 213
SspMI CTAG 2 cut(s) 305, 321
StuI AGGCCT 1 cut(s) 220
StyI CCWWGG 2 cut(s) 221, 497
TaqI TCGA 2 cut(s) 447, 485
TasI AATT 2 cut(s) 50, 335
TatI WGTACW 1 cut(s) 323
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 2 cut(s) 38, 474
Tru9I TTAA 2 cut(s) 38, 474
TseI GCWGC 4 cut(s) 382, 385, 466, 479
XapI RAATTY 1 cut(s) 50
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 119
XspI CTAG 2 cut(s) 305, 321
ZrmI AGTACT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.