Rh2DG535900

SAWADEE domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
76601300 .. 76602264
965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG535900.1

Sequence Viewer

Length: 330 bp
ATGGTGTACTATAATTTGTTGTTTTATGCACAGATGAGTAATAGAACTTATGAAAGTTCTTCTGAAATGGATCGACACGACGTGGATATTGGAGGGGTTCCCTATGTAGTAATGGTGGAAAATCTTGAGAAGGGGATATCACCATTTACAATTATGGAATTTGTCCATCAGCAAGTTTCAATATCATGTCAAGTACTTGTTTCTCCAAGTTTGTCGTCGGAGGCATATGCAAGAGGAACCATCACTGTGAACAGCAAAAAGAATCTGGACAAGTTGTCTGGGTTTTTGGAGAATCCAGATCACAGCATCATTTCTTCAAAGGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.23

Weight (kDa)

5.49

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 78
AcsI RAATTY 1 cut(s) 158
AdeI CACNNNGTG 1 cut(s) 82
AfaI GTAC 2 cut(s) 8, 195
AgsI TTSAA 2 cut(s) 180, 318
AhdI GACNNNNNGTC 1 cut(s) 274
AjiI CACGTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 78
ApoI RAATTY 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 132
BccI CCATC 2 cut(s) 174, 248
BmcAI AGTACT 1 cut(s) 195
BmeRI GACNNNNNGTC 1 cut(s) 274
BmgBI CACGTC 1 cut(s) 82
BmiI GGNNCC 2 cut(s) 99, 238
BmsI GCATC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 146
Bsp143I GATC 2 cut(s) 70, 298
BspLI GGNNCC 2 cut(s) 99, 238
BspPI GGATC 1 cut(s) 78
BssMI GATC 2 cut(s) 70, 298
Bst4CI ACNGT 1 cut(s) 247
BstKTI GATC 2 cut(s) 73, 301
BstMBI GATC 2 cut(s) 70, 298
BtrI CACGTC 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 243
Csp6I GTAC 2 cut(s) 7, 194
CviAII CATG 1 cut(s) 186
CviQI GTAC 2 cut(s) 7, 194
DpnI GATC 2 cut(s) 72, 300
DpnII GATC 2 cut(s) 70, 298
DraIII CACNNNGTG 1 cut(s) 82
DriI GACNNNNNGTC 1 cut(s) 274
Eam1105I GACNNNNNGTC 1 cut(s) 274
Eco32I GATATC 1 cut(s) 138
EcoRV GATATC 1 cut(s) 138
FaeI CATG 1 cut(s) 189
FaiI YATR 8 cut(s) 12, 27, 51, 105, 155, 187, 226, 228
FatI CATG 1 cut(s) 185
FauNDI CATATG 1 cut(s) 226
Hin1II CATG 1 cut(s) 189
HinfI GANTC 2 cut(s) 262, 292
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 7, 250
Hpy188I TCNGA 2 cut(s) 64, 220
Hpy188III TCNNGA 3 cut(s) 125, 266, 296
Hpy8I GTNNAC 2 cut(s) 7, 250
Hpy99I CGWCG 2 cut(s) 83, 220
HpyAV CCTTC 2 cut(s) 124, 318
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 29, 230
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 189
Kzo9I GATC 2 cut(s) 70, 298
LpnPI CCDG 3 cut(s) 251, 264, 309
LweI GCATC 1 cut(s) 315
MaeII ACGT 1 cut(s) 81
MalI GATC 2 cut(s) 72, 300
MboI GATC 2 cut(s) 70, 298
MboII GAAGA 2 cut(s) 51, 306
MluCI AATT 3 cut(s) 13, 150, 158
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 3 cut(s) 86, 214, 227
MslI CAYNNNNRTG 1 cut(s) 245
NdeI CATATG 1 cut(s) 226
NdeII GATC 2 cut(s) 70, 298
NlaIII CATG 1 cut(s) 189
NlaIV GGNNCC 2 cut(s) 99, 238
PfeI GAWTC 2 cut(s) 262, 292
PspN4I GGNNCC 2 cut(s) 99, 238
RsaI GTAC 2 cut(s) 8, 195
RsaNI GTAC 2 cut(s) 7, 194
RseI CAYNNNNRTG 1 cut(s) 245
Sau3AI GATC 2 cut(s) 70, 298
ScaI AGTACT 1 cut(s) 195
SetI ASST 2 cut(s) 84, 329
SfaNI GCATC 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 3 cut(s) 13, 150, 158
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 73
TasI AATT 3 cut(s) 13, 150, 158
TatI WGTACW 2 cut(s) 6, 193
TfiI GAWTC 2 cut(s) 262, 292
TscAI CASTG 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 66
TspRI CASTG 1 cut(s) 250
XapI RAATTY 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.