Rh2CG346700

Isoflavone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000405
Physical Location & Seq
Reverse (-)
46742517 .. 46747017
4501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG346700.1

Sequence Viewer

Length: 291 bp
ATGATTTACCAGAGGTCTGGAGTGGACGACGCATGGTATGCCGTCAAAATTTTGACGGAAGGCAATAGTGCGGAACGGCTAAGAGTGAAGTTTTGCAACTTCGAAGACGAGTACGATGAGGTGTACGAGGCCAAGGACCTAACGTCAGCTAACCACGTGACGAATTTCCTGTCGAGGTTCAAGCCTGTGTCTATTCGATCAGGTGCAGGACTCGGAATGCCCGAGCGTGGTGGAGGGCATGATCGTGTGTACCGCCGTTTCTGTTACACCCGACCATTGCCGTTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

96

Amino Acids

11.09

Weight (kDa)

7.79

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 5 - 46 2.8e-06 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 71, 253
AcsI RAATTY 2 cut(s) 48, 163
AcvI CACGTG 1 cut(s) 157
AfaI GTAC 3 cut(s) 113, 125, 251
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 1 cut(s) 181
AhdI GACNNNNNGTC 1 cut(s) 142
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 1 cut(s) 129
ApoI RAATTY 2 cut(s) 48, 163
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspS9I GGNCC 1 cut(s) 136
AsuII TTCGAA 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 136
BbrPI CACGTG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 111
BceAI ACGGC 4 cut(s) 26, 92, 240, 265
Bme18I GGWCC 1 cut(s) 136
BmeRI GACNNNNNGTC 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 102
BsaAI YACGTR 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 227
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 102
Bsp143I GATC 2 cut(s) 197, 241
BspACI CCGC 2 cut(s) 71, 253
BspANI GGCC 1 cut(s) 131
BspT104I TTCGAA 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 197, 241
BssT1I CCWWGG 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 80
BstKTI GATC 2 cut(s) 200, 244
BstMBI GATC 2 cut(s) 197, 241
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 17
BsuRI GGCC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 1 cut(s) 38
Csp6I GTAC 3 cut(s) 112, 124, 250
CviAII CATG 2 cut(s) 33, 239
CviJI RGCY 4 cut(s) 79, 131, 149, 184
CviKI_1 RGCY 4 cut(s) 79, 131, 149, 184
CviQI GTAC 3 cut(s) 112, 124, 250
DdeI CTNAG 1 cut(s) 80
DpnI GATC 2 cut(s) 199, 243
DpnII GATC 2 cut(s) 197, 241
DriI GACNNNNNGTC 1 cut(s) 142
Eam1105I GACNNNNNGTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 136
Eco72I CACGTG 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 36, 242
FaiI YATR 4 cut(s) 34, 39, 240, 289
FatI CATG 2 cut(s) 32, 238
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 131
HgaI GACGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 36, 242
HinfI GANTC 1 cut(s) 210
Hpy166II GTNNAC 3 cut(s) 25, 124, 250
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 3 cut(s) 25, 124, 250
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 53
HpyCH4IV ACGT 2 cut(s) 143, 156
HpyCH4V TGCA 2 cut(s) 96, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 143, 156
Hsp92II CATG 2 cut(s) 36, 242
Kzo9I GATC 2 cut(s) 197, 241
LpnPI CCDG 6 cut(s) 3, 23, 182, 186, 192, 198
MaeII ACGT 2 cut(s) 143, 156
MaeIII GTNAC 2 cut(s) 157, 263
MalI GATC 2 cut(s) 199, 243
MboI GATC 2 cut(s) 197, 241
MboII GAAGA 1 cut(s) 116
MluCI AATT 2 cut(s) 48, 163
MlyI GAGTC 1 cut(s) 204
MnlI CCTC 5 cut(s) 6, 112, 121, 168, 227
MslI CAYNNNNRTG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 2 cut(s) 197, 241
NlaIII CATG 2 cut(s) 36, 242
NmuCI GTSAC 1 cut(s) 157
NspV TTCGAA 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 222
PleI GAGTC 1 cut(s) 204
PmaCI CACGTG 1 cut(s) 157
PmlI CACGTG 1 cut(s) 157
PpsI GAGTC 1 cut(s) 204
Ppu21I YACGTR 1 cut(s) 157
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
PspCI CACGTG 1 cut(s) 157
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
RsaI GTAC 3 cut(s) 113, 125, 251
RsaNI GTAC 3 cut(s) 112, 124, 250
RseI CAYNNNNRTG 1 cut(s) 243
Sau3AI GATC 2 cut(s) 197, 241
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 204
SetI ASST 8 cut(s) 17, 123, 141, 146, 151, 159, 179, 205
SfuI TTCGAA 1 cut(s) 102
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 2 cut(s) 48, 163
SsiI CCGC 2 cut(s) 71, 253
StyI CCWWGG 1 cut(s) 132
TaiI ACGT 2 cut(s) 146, 159
TaqI TCGA 3 cut(s) 102, 173, 196
TasI AATT 2 cut(s) 48, 163
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 2 cut(s) 48, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.