Rh5BG204800

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000405
Physical Location & Seq
Forward (+)
23232818 .. 23233102
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG204800.1

Sequence Viewer

Length: 285 bp
ATGGATATAGGAGGGGGAGGGGTGCCCCATGTGCCACTTGTGGAGAATGTTGAGAAGGGGATATCACCGGTTACAATTATGCAATTTCTATATCAGCAAGTTTCAGTCTCATGTAGAGCATTTGTTATGCCAAGTACGCAGTCAGAGTCATTTACAAGAGGAATCATCATACTGGATAACAAAAGGAATCTTGAAAAGTTGTCCAACTTCTTGGAGAGTCCAGATCGCATCATCATTTCCTCAAGAGGAAATTATATCTTGTGTCAATTGCTTTTATTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

94

Amino Acids

10.49

Weight (kDa)

5.72

Isoelectric Point (pI)

54.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AfaI GTAC 1 cut(s) 136
AgeI ACCGGT 1 cut(s) 67
AgsI TTSAA 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 112
AsiGI ACCGGT 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 27
BanI GGYRCC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 24
BmsI GCATC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 226
BsaWI WCCGGW 1 cut(s) 67
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 22
BshTI ACCGGT 1 cut(s) 67
BsiSI CCGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 1 cut(s) 177
BssAI RCCGGY 1 cut(s) 67
BssMI GATC 1 cut(s) 223
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 31, 136
BstSLI GKGCMC 1 cut(s) 27
BstXI CCANNNNNNTGG 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 67
Csp6I GTAC 1 cut(s) 135
CspAI ACCGGT 1 cut(s) 67
CviAII CATG 2 cut(s) 29, 111
CviQI GTAC 1 cut(s) 135
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eco32I GATATC 1 cut(s) 63
EcoRV GATATC 1 cut(s) 63
FaeI CATG 2 cut(s) 32, 114
FaiI YATR 8 cut(s) 8, 30, 80, 91, 112, 128, 170, 255
FatI CATG 2 cut(s) 28, 110
FspBI CTAG 1 cut(s) 283
HapII CCGG 1 cut(s) 68
Hin1II CATG 2 cut(s) 32, 114
HinfI GANTC 4 cut(s) 146, 162, 187, 217
HpaII CCGG 1 cut(s) 68
HphI GGTGA 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 191, 221, 243
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 136
Hsp92II CATG 2 cut(s) 32, 114
Kzo9I GATC 1 cut(s) 223
LpnPI CCDG 3 cut(s) 81, 158, 234
LweI GCATC 1 cut(s) 237
MaeI CTAG 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MfeI CAATTG 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 4 cut(s) 75, 83, 250, 266
MlyI GAGTC 2 cut(s) 155, 226
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 5 cut(s) 5, 11, 152, 239, 250
MspI CCGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 31, 136
NdeII GATC 1 cut(s) 223
NlaIII CATG 2 cut(s) 32, 114
NlaIV GGNNCC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 162, 187
PinAI ACCGGT 1 cut(s) 67
PleI GAGTC 2 cut(s) 154, 225
PpsI GAGTC 2 cut(s) 154, 225
PspN4I GGNNCC 1 cut(s) 24
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 223
SchI GAGTC 2 cut(s) 155, 226
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 4 cut(s) 75, 83, 250, 266
SspMI CTAG 1 cut(s) 283
TasI AATT 4 cut(s) 75, 83, 250, 266
TfiI GAWTC 2 cut(s) 162, 187
XspI CTAG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.