Rh2BG369100

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000405
Physical Location & Seq
Reverse (-)
51528722 .. 51543794
15073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG369100.1

Sequence Viewer

Length: 600 bp
ATGATTTACCAGAGGTCTGGAGTGGACGACGCATGGTATGCCGTCAAAATTTATACGGAAGACAATAGTGCGGAACGGCTAACAGTGAAGTTTTGCAACTTTGAAGACGAGTACGACGAAGTGTACGAGGCCAAGGACCTAACGTCAGCTAACCACATGACGAACTTCCTGTCGAGGTTCAGGCTTGTGTCTATTCAGGTGCAGGACTCGGAATGCCCGAACGTGGTGGAGGGCATGCTCGTGTGTGCCGCCGTTTCTGTTACACCCGACAATTGCCGCTTCTATGATGCTGTTGTGAACCGGGTGAAATGTAAGAAGCATCGAAGTGTGGAAGGAGAAGAAGAATGCCTATGCAAGTTCGTTCTATTCTGGAAACATTGGCCAAAGGGTGGAAGCCTTACGACTCAAGCCGTCAGAGATATCTGTAGAGTCCAGCCTCGGACGGAAGAAGTAGATCCACTTCTTGCCTTGTTTCTACAAACGACAAGGAGTAGGATCCAAACTAATGAGTCGAGCCTTGTTCCTCTTGCTACCTCTTCTACAGTACCTCATGAGGCCTCTTCGAAAGGAATAAGGGAAAAATGGAGTGAAAGGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

199

Amino Acids

22.81

Weight (kDa)

5.49

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 5 - 142 5.8e-29 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 389
AciI CCGC 3 cut(s) 71, 249, 277
AclWI GGATC 3 cut(s) 449, 490, 503
AcoI YGGCCR 1 cut(s) 380
AcsI RAATTY 1 cut(s) 48
AfaI GTAC 3 cut(s) 113, 125, 546
AfiI CCNNNNNNNGG 2 cut(s) 223, 389
AgsI TTSAA 1 cut(s) 104
AhdI GACNNNNNGTC 1 cut(s) 142
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwI GGATC 3 cut(s) 449, 490, 503
AoxI GGCC 3 cut(s) 129, 380, 555
ApoI RAATTY 1 cut(s) 48
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 316
AsuII TTCGAA 1 cut(s) 563
AvaII GGWCC 1 cut(s) 136
BalI TGGCCA 1 cut(s) 382
BamHI GGATCC 1 cut(s) 495
BarI GAAGNNNNNNTAC 2 cut(s) 444, 476
BauI CACGAG 1 cut(s) 239
BbsI GAAGAC 2 cut(s) 66, 111
BceAI ACGGC 4 cut(s) 26, 92, 236, 395
BcnI CCSGG 1 cut(s) 302
BfaI CTAG 1 cut(s) 598
BfmI CTRYAG 2 cut(s) 424, 540
BisI GCNGC 2 cut(s) 249, 277
BlsI GCNGC 2 cut(s) 250, 278
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 136
BmeRI GACNNNNNGTC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 497
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 2 cut(s) 277, 328
BpiI GAAGAC 2 cut(s) 66, 111
BpmI CTGGAG 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 563
BpuEI CTTGAG 1 cut(s) 390
BpuMI CCSGG 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 132, 437
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 389
BseDI CCNNGG 2 cut(s) 132, 437
BseLI CCNNNNNNNGG 2 cut(s) 223, 389
BsgI GTGCAG 1 cut(s) 221
BshFI GGCC 3 cut(s) 131, 382, 557
BsiSI CCGG 1 cut(s) 301
BslI CCNNNNNNNGG 2 cut(s) 223, 389
BsmI GAATGC 2 cut(s) 218, 350
BsnI GGCC 3 cut(s) 131, 382, 557
Bsp119I TTCGAA 1 cut(s) 563
Bsp143I GATC 2 cut(s) 454, 495
BspACI CCGC 3 cut(s) 71, 249, 277
BspANI GGCC 3 cut(s) 131, 382, 557
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 497
BspPI GGATC 3 cut(s) 449, 490, 503
BspT104I TTCGAA 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 132, 437
BssMI GATC 2 cut(s) 454, 495
BssSI CACGAG 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 239
Bst4CI ACNGT 2 cut(s) 85, 544
Bst6I CTCTTC 2 cut(s) 541, 565
BstAPI GCANNNNNTGC 1 cut(s) 38
BstBI TTCGAA 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 236
BstKTI GATC 2 cut(s) 457, 498
BstMBI GATC 2 cut(s) 454, 495
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 2 cut(s) 424, 540
BstV2I GAAGAC 2 cut(s) 66, 111
BstX2I RGATCY 2 cut(s) 454, 495
BstXI CCANNNNNNTGG 1 cut(s) 17
BstYI RGATCY 2 cut(s) 454, 495
BsuRI GGCC 3 cut(s) 131, 382, 557
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 236
CciI TCATGA 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 136
CseI GACGC 1 cut(s) 38
Csp6I GTAC 3 cut(s) 112, 124, 545
CviAII CATG 4 cut(s) 33, 157, 235, 551
CviQI GTAC 3 cut(s) 112, 124, 545
DpnI GATC 2 cut(s) 456, 497
DpnII GATC 2 cut(s) 454, 495
DriI GACNNNNNGTC 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 541, 565
Eam1105I GACNNNNNGTC 1 cut(s) 142
EarI CTCTTC 2 cut(s) 541, 565
Eco130I CCWWGG 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 557
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 136
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 4 cut(s) 36, 160, 238, 554
FaiI YATR 8 cut(s) 34, 39, 54, 158, 236, 285, 352, 552
FatI CATG 4 cut(s) 32, 156, 234, 550
Fnu4HI GCNGC 2 cut(s) 249, 277
Fsp4HI GCNGC 2 cut(s) 249, 277
FspBI CTAG 1 cut(s) 598
GluI GCNGC 2 cut(s) 249, 277
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 3 cut(s) 131, 382, 557
HapII CCGG 1 cut(s) 301
HgaI GACGC 1 cut(s) 38
Hin1II CATG 4 cut(s) 36, 160, 238, 554
HinfI GANTC 4 cut(s) 206, 403, 429, 509
HpaII CCGG 1 cut(s) 301
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 3 cut(s) 25, 124, 298
Hpy188I TCNGA 3 cut(s) 211, 416, 441
Hpy188III TCNNGA 3 cut(s) 18, 370, 551
Hpy8I GTNNAC 3 cut(s) 25, 124, 298
Hpy99I CGWCG 2 cut(s) 32, 119
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 2 cut(s) 85, 544
HpyCH4IV ACGT 2 cut(s) 143, 222
HpyCH4V TGCA 3 cut(s) 96, 202, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpySE526I ACGT 2 cut(s) 143, 222
Hsp92II CATG 4 cut(s) 36, 160, 238, 554
Kzo9I GATC 2 cut(s) 454, 495
LpnPI CCDG 9 cut(s) 3, 23, 166, 182, 182, 188, 314, 355, 446
LweI GCATC 2 cut(s) 277, 328
MaeI CTAG 1 cut(s) 598
MaeII ACGT 2 cut(s) 143, 222
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 456, 497
MboI GATC 2 cut(s) 454, 495
MboII GAAGA 7 cut(s) 71, 116, 350, 353, 458, 528, 552
MfeI CAATTG 1 cut(s) 271
MflI RGATCY 2 cut(s) 454, 495
MlsI TGGCCA 1 cut(s) 382
MluCI AATT 2 cut(s) 48, 271
MluNI TGGCCA 1 cut(s) 382
MlyI GAGTC 4 cut(s) 200, 397, 438, 518
Mox20I TGGCCA 1 cut(s) 382
MscI TGGCCA 1 cut(s) 382
MslI CAYNNNNRTG 2 cut(s) 239, 324
Msp20I TGGCCA 1 cut(s) 382
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 271
Mva1269I GAATGC 2 cut(s) 218, 350
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 302
NdeII GATC 2 cut(s) 454, 495
NlaIII CATG 4 cut(s) 36, 160, 238, 554
NlaIV GGNNCC 1 cut(s) 497
NspI RCATGY 1 cut(s) 238
NspV TTCGAA 1 cut(s) 563
PaeI GCATGC 1 cut(s) 238
PagI TCATGA 1 cut(s) 550
PceI AGGCCT 1 cut(s) 557
PcsI WCGNNNNNNNCGW 3 cut(s) 114, 123, 215
PctI GAATGC 2 cut(s) 218, 350
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 2 cut(s) 250, 278
PleI GAGTC 4 cut(s) 200, 397, 437, 517
PpsI GAGTC 4 cut(s) 200, 397, 437, 517
PpuMI RGGWCCY 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 497
PspPI GGNCC 1 cut(s) 136
PspPPI RGGWCCY 1 cut(s) 136
PsuI RGATCY 2 cut(s) 454, 495
RsaI GTAC 3 cut(s) 113, 125, 546
RsaNI GTAC 3 cut(s) 112, 124, 545
RseI CAYNNNNRTG 2 cut(s) 239, 324
SatI GCNGC 2 cut(s) 249, 277
Sau3AI GATC 2 cut(s) 454, 495
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 4 cut(s) 200, 397, 438, 518
ScrFI CCNGG 1 cut(s) 302
SetI ASST 9 cut(s) 17, 141, 146, 151, 179, 201, 225, 536, 550
SfaNI GCATC 2 cut(s) 277, 328
SfcI CTRYAG 2 cut(s) 424, 540
SfuI TTCGAA 1 cut(s) 563
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 239, 324
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
SphI GCATGC 1 cut(s) 238
Sse9I AATT 2 cut(s) 48, 271
SseBI AGGCCT 1 cut(s) 557
SsiI CCGC 3 cut(s) 71, 249, 277
SspMI CTAG 1 cut(s) 598
StuI AGGCCT 1 cut(s) 557
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 85, 544
TaiI ACGT 2 cut(s) 146, 225
TaqI TCGA 4 cut(s) 173, 322, 512, 563
TasI AATT 2 cut(s) 48, 271
TauI GCSGC 2 cut(s) 251, 279
TscAI CASTG 1 cut(s) 90
TspGWI ACGGA 2 cut(s) 71, 458
TspRI CASTG 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 48
XceI RCATGY 1 cut(s) 238
XspI CTAG 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.