RLG00000033165

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000405
Physical Location & Seq
Forward (+)
23966019 .. 23967101
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033165

Sequence Viewer

Length: 522 bp
ATGATTGGCAATCCTTCTGAAAGGAGTGGATATGACATGGATATAGGAGGGGTGCCCCATGTGCCACTTGTGAAGAATGTTGAGAAGGGGATATCACCGGTTACAATTATGCAATTTCTATATCAGCAAGTTTCAGTCTCATGTAGAGCATTTGTTAGGCCAAGTACGCAGTCAGAGTCATATACAAGTGGATTCATCATACTGGATAACAAAAGGAATCTTGAAAAGTTGTCCAACTTCTTGGAGAGTCCAGATCGCATCATCATTTCCTCAAGAGGAAGGCCTTGGGTGGTGCCTCAGAAAAAACTCTTGGATGACACACAGAGTTCAATGACCGAAACAGCATTAGATGACAGATATCTAATAAGCAGCAATGAGTTAAAGGTAGTCATTTCTGGGAGTCGAGAATACCAGAAAGCTAAAAAGCTAGAGAATTTGTTTAAGAAATTTGCCGACCACCAATGCAGAATTCATAAGAGGCTACTTTATGAAGAGGCAGAGATCTCGAAGCGACCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

174

Amino Acids

19.79

Weight (kDa)

9.2

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 52, 292
AcsI RAATTY 3 cut(s) 433, 446, 468
AfaI GTAC 1 cut(s) 166
AgeI ACCGGT 1 cut(s) 97
AgsI TTSAA 2 cut(s) 224, 330
AjuI GAANNNNNNNTTGG 4 cut(s) 293, 325, 453, 485
AluBI AGCT 2 cut(s) 419, 427
AluI AGCT 2 cut(s) 419, 427
Alw26I GTCTC 1 cut(s) 142
AoxI GGCC 2 cut(s) 158, 281
ApeKI GCWGC 1 cut(s) 369
ApoI RAATTY 3 cut(s) 433, 446, 468
AsiGI ACCGGT 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 87
BaeGI GKGCMC 1 cut(s) 57
BanI GGYRCC 2 cut(s) 52, 292
BbvI GCAGC 1 cut(s) 381
BcgI CGANNNNNNTGC 2 cut(s) 486, 520
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 1 cut(s) 428
BglII AGATCT 1 cut(s) 501
BisI GCNGC 1 cut(s) 370
BlsI GCNGC 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 54, 294
BmsI GCATC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 284
BsaWI WCCGGW 1 cut(s) 97
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 319
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 207
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 1 cut(s) 381
BshFI GGCC 2 cut(s) 160, 283
BshNI GGYRCC 2 cut(s) 52, 292
BshTI ACCGGT 1 cut(s) 97
BsiSI CCGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 142
BsnI GGCC 2 cut(s) 160, 283
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 253, 501
BspANI GGCC 2 cut(s) 160, 283
BspCNI CTCAG 1 cut(s) 310
BspLI GGNNCC 2 cut(s) 54, 294
BspT107I GGYRCC 2 cut(s) 52, 292
BsrDI GCAATG 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 2 cut(s) 253, 501
BssT1I CCWWGG 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 486
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 2 cut(s) 256, 504
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 2 cut(s) 253, 501
BstMWI GCNNNNNNNGC 2 cut(s) 61, 166
BstSLI GKGCMC 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 501
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 1 cut(s) 501
BsuRI GGCC 2 cut(s) 160, 283
BtsCI GGATG 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 97
Csp6I GTAC 1 cut(s) 165
CspAI ACCGGT 1 cut(s) 97
CviAII CATG 3 cut(s) 37, 59, 141
CviJI RGCY 5 cut(s) 160, 283, 419, 427, 481
CviKI_1 RGCY 5 cut(s) 160, 283, 419, 427, 481
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 1 cut(s) 297
DpnI GATC 2 cut(s) 255, 503
DpnII GATC 2 cut(s) 253, 501
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 284
Eco147I AGGCCT 1 cut(s) 283
Eco32I GATATC 2 cut(s) 93, 359
EcoRI GAATTC 1 cut(s) 468
EcoRV GATATC 2 cut(s) 93, 359
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 3 cut(s) 40, 62, 144
FatI CATG 3 cut(s) 36, 58, 140
Fnu4HI GCNGC 1 cut(s) 370
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 370
FspBI CTAG 1 cut(s) 428
GluI GCNGC 1 cut(s) 370
HaeIII GGCC 2 cut(s) 160, 283
HapII CCGG 1 cut(s) 98
Hin1II CATG 3 cut(s) 40, 62, 144
HinfI GANTC 5 cut(s) 176, 192, 217, 247, 400
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 87
Hpy188I TCNGA 3 cut(s) 19, 175, 300
Hpy188III TCNNGA 5 cut(s) 221, 251, 273, 404, 505
HpyAV CCTTC 3 cut(s) 24, 79, 273
HpyCH4V TGCA 2 cut(s) 112, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 166
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 3 cut(s) 40, 62, 144
Kzo9I GATC 2 cut(s) 253, 501
LpnPI CCDG 5 cut(s) 111, 188, 264, 381, 425
Lsp1109I GCAGC 1 cut(s) 381
LweI GCATC 1 cut(s) 267
MaeI CTAG 1 cut(s) 428
MaeIII GTNAC 1 cut(s) 100
MalI GATC 2 cut(s) 255, 503
MboI GATC 2 cut(s) 253, 501
MboII GAAGA 2 cut(s) 85, 503
MflI RGATCY 1 cut(s) 501
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 5 cut(s) 105, 113, 433, 446, 468
MlyI GAGTC 3 cut(s) 185, 256, 409
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 6 cut(s) 41, 269, 280, 306, 471, 487
MseI TTAA 2 cut(s) 380, 441
MspI CCGG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 61, 166
NdeII GATC 2 cut(s) 253, 501
NlaIII CATG 3 cut(s) 40, 62, 144
NlaIV GGNNCC 2 cut(s) 54, 294
PceI AGGCCT 1 cut(s) 283
PfeI GAWTC 2 cut(s) 192, 217
PinAI ACCGGT 1 cut(s) 97
PkrI GCNGC 1 cut(s) 371
PleI GAGTC 3 cut(s) 184, 255, 408
PpsI GAGTC 3 cut(s) 184, 255, 408
PspN4I GGNNCC 2 cut(s) 54, 294
PsuI RGATCY 1 cut(s) 501
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 380, 441
SatI GCNGC 1 cut(s) 370
Sau3AI GATC 2 cut(s) 253, 501
SchI GAGTC 3 cut(s) 185, 256, 409
SduI GDGCHC 1 cut(s) 57
SetI ASST 4 cut(s) 387, 421, 429, 517
SfaNI GCATC 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 5 cut(s) 105, 113, 433, 446, 468
SseBI AGGCCT 1 cut(s) 283
SspMI CTAG 1 cut(s) 428
StuI AGGCCT 1 cut(s) 283
StyI CCWWGG 1 cut(s) 284
TaqI TCGA 2 cut(s) 403, 506
TaqII GACCGA 1 cut(s) 350
TasI AATT 5 cut(s) 105, 113, 433, 446, 468
TfiI GAWTC 2 cut(s) 192, 217
Tru1I TTAA 2 cut(s) 380, 441
Tru9I TTAA 2 cut(s) 380, 441
TseI GCWGC 1 cut(s) 369
TspDTI ATGAA 3 cut(s) 184, 461, 504
XapI RAATTY 3 cut(s) 433, 446, 468
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.