RLG00000019323

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000405
Physical Location & Seq
Reverse (-)
50269251 .. 50269807
557 bp
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UTR
Exon/CDS
Intron
RLM00000019323

Sequence Viewer

Length: 429 bp
ATGACCATGGAAATGGAGTTCAGGTCTGGAGTGGATGACGCATGGTATGCCGTCAAAATTTTGACTGAAGGCAATAGTGCGGAACGGCTAAGAGTGAAGTTTTGCGACTTCGAAGATGAGTACGACGAGGTGTATGAGGCCAAGGACCTAACGTCAGCTAACCACATGACGAACTTCCGGTCGAGGTTCAGGCCTATGTCTGTTCAGGGCATGCTCGTGTGTACCACCGTTTCTATTACACCCGACGATTGTAGCTTCTTTAATGCCGTTGTGAACCAGGTGAAACGTAAGAAGCATCGAAGTGTGGAAGGAGAAGAAGAATGCCTATGCAAGTTCGTTCTATTTTGGAAACATGGGCCAAAGGGGGAAGCCTTACGACTCAAGCCGTCGGAGATATCTGTAGAGTCGAGCCTCGGACAGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

143

Amino Acids

16.36

Weight (kDa)

5.96

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 2 - 123 2e-21 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 2 cut(s) 122, 223
AhdI GACNNNNNGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 276
AloI GAACNNNNNNTCC 1 cut(s) 34
AluBI AGCT 2 cut(s) 158, 255
AluI AGCT 2 cut(s) 158, 255
AoxI GGCC 3 cut(s) 138, 191, 356
ApoI RAATTY 1 cut(s) 57
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspS9I GGNCC 2 cut(s) 145, 356
AsuHPI GGTGA 1 cut(s) 292
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 1 cut(s) 145
BauI CACGAG 1 cut(s) 215
BceAI ACGGC 4 cut(s) 35, 101, 251, 370
BciT130I CCWGG 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 399
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 145
BmeRI GACNNNNNGTC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 145, 356
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 48
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 365
BsaJI CCNNGG 3 cut(s) 6, 141, 412
BsaWI WCCGGW 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 3 cut(s) 6, 141, 412
BseGI GGATG 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 182
BshFI GGCC 3 cut(s) 140, 193, 358
BsiEI CGRYCG 1 cut(s) 182
BsiSI CCGG 1 cut(s) 178
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 3 cut(s) 140, 193, 358
Bsp119I TTCGAA 1 cut(s) 111
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 1 cut(s) 80
BspANI GGCC 3 cut(s) 140, 193, 358
BspT104I TTCGAA 1 cut(s) 111
BssECI CCNNGG 3 cut(s) 6, 141, 412
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 2 cut(s) 6, 141
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 229
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 40
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 399
BstXI CCANNNNNNTGG 1 cut(s) 13
BsuRI GGCC 3 cut(s) 140, 193, 358
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 145, 356
CseI GACGC 1 cut(s) 47
CsiI ACCWGGT 1 cut(s) 276
Csp6I GTAC 2 cut(s) 121, 222
CviAII CATG 5 cut(s) 7, 42, 166, 211, 353
CviJI RGCY 9 cut(s) 88, 140, 158, 193, 255, 358, 371, 385, 411
CviKI_1 RGCY 9 cut(s) 88, 140, 158, 193, 255, 358, 371, 385, 411
CviQI GTAC 2 cut(s) 121, 222
DdeI CTNAG 1 cut(s) 89
DriI GACNNNNNGTC 1 cut(s) 151
Eam1105I GACNNNNNGTC 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 6, 141
Eco147I AGGCCT 1 cut(s) 193
Eco32I GATATC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 276
EcoRV GATATC 1 cut(s) 396
EcoT14I CCWWGG 2 cut(s) 6, 141
ErhI CCWWGG 2 cut(s) 6, 141
FaeI CATG 5 cut(s) 10, 45, 169, 214, 356
FaiI YATR 9 cut(s) 8, 43, 48, 135, 167, 197, 212, 328, 354
FatI CATG 5 cut(s) 6, 41, 165, 210, 352
FokI GGATG 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 3 cut(s) 140, 193, 358
HapII CCGG 1 cut(s) 178
HgaI GACGC 1 cut(s) 47
Hin1II CATG 5 cut(s) 10, 45, 169, 214, 356
HinfI GANTC 2 cut(s) 378, 404
HpaII CCGG 1 cut(s) 178
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 2 cut(s) 222, 274
Hpy188I TCNGA 2 cut(s) 391, 416
Hpy188III TCNNGA 1 cut(s) 27
Hpy8I GTNNAC 2 cut(s) 222, 274
Hpy99I CGWCG 3 cut(s) 128, 248, 391
HpyAV CCTTC 2 cut(s) 62, 302
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 2 cut(s) 152, 286
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 2 cut(s) 152, 286
Hsp92II CATG 5 cut(s) 10, 45, 169, 214, 356
LpnPI CCDG 7 cut(s) 7, 12, 175, 191, 191, 263, 290
LweI GCATC 1 cut(s) 304
MabI ACCWGGT 1 cut(s) 276
MaeII ACGT 2 cut(s) 152, 286
MboII GAAGA 3 cut(s) 125, 326, 329
MluCI AATT 1 cut(s) 57
MlyI GAGTC 2 cut(s) 372, 413
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 4 cut(s) 121, 130, 177, 422
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 3 cut(s) 11, 215, 300
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 47
NcoI CCATGG 1 cut(s) 6
NlaIII CATG 5 cut(s) 10, 45, 169, 214, 356
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 111
PaeI GCATGC 1 cut(s) 214
PceI AGGCCT 1 cut(s) 193
PctI GAATGC 1 cut(s) 326
PleI GAGTC 2 cut(s) 372, 412
PpsI GAGTC 2 cut(s) 372, 412
PpuMI RGGWCCY 1 cut(s) 145
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspPI GGNCC 2 cut(s) 145, 356
PspPPI RGGWCCY 1 cut(s) 145
RsaI GTAC 2 cut(s) 122, 223
RsaNI GTAC 2 cut(s) 121, 222
RseI CAYNNNNRTG 3 cut(s) 11, 215, 300
SaqAI TTAA 1 cut(s) 261
Sau96I GGNCC 2 cut(s) 145, 356
SchI GAGTC 2 cut(s) 372, 413
ScrFI CCNGG 1 cut(s) 278
SetI ASST 9 cut(s) 26, 132, 150, 155, 160, 188, 257, 282, 289
SexAI ACCWGGT 1 cut(s) 276
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 399
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 3 cut(s) 11, 215, 300
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SphI GCATGC 1 cut(s) 214
Sse9I AATT 1 cut(s) 57
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 1 cut(s) 80
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 2 cut(s) 6, 141
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 2 cut(s) 155, 289
TaqI TCGA 4 cut(s) 111, 182, 298, 407
TasI AATT 1 cut(s) 57
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 57
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.