RLG00000002835

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000405
Physical Location & Seq
Forward (+)
40447864 .. 40450449
2586 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002835

Sequence Viewer

Length: 915 bp
ATGGATTTGGAGTTCAGGTCGTGCGTGGACGACGCATGGTACCACGTCCGAATAGAGACGGACTGTGACGGCGGGGATCGACTGAGAGTCAAGTTCGTCGGCTTCTCCGACGATCACGACGAGGTTTTTGACGCTGAGGAGTTGACGTCGTTTAGAGACGTGGATGAGTTTAGGTCGAGGTTCAGGCGTATGTCGATTCAGGTTCAAGACTGGGAGTGCAGAAAGGTGGTGAAGGGGACGGTCGTGTGTGCCGCCATTTCAATTGGCCCCGACGACTGCCGCTTCTACGACGCCGTTGTTGATCAGGTGGTACATAAGGAACATCGGCTCGTAAAAGGAAAAGAAGAATGCTCATGCAACTTCATCCTATTTTGGAGACATGGTCCAAAGGCTCGATCATTAACTGCTCAAACTCTTGAAAACATTTGCAGAGTGCAACCTCCTGTGGACAAATTAGATCCGCTGCTGACCACTTTTCTTGACACAGCAATGGAAAAAATAGAAACCATTCTTTCCAGTATTTTCAAAGTTCCTCATGAAGCTTCTCATCACAGAGAACCTTGTACGCCCAACTGCCGGGTAGAGCTAAGCTTTTCTAAACGTCTAAACAAGGATACAAGCCTTTCCAGGCGATCTTTAAGTAAAGAAATGATTGACAATCCTTCGGAAAAGGATGAACATGACATGGACATAGGAGGTGTTCCTTATATGTTACTGGTTGAGAACCTTGAGAAGGGGATATCACCATTCACAATTATGGAATTCATACACCAGCAAGCTACAATCTCATGTCAAGCATCTGTTTGGCCAAGTAAGTCATCATCTGAAAATGTCGTCTGTGTAAATGTCGTCTGTGTAATTATAATTTTGCAAACTGGACAATCTGAAAATGGTTTTGAACTTGAATGGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

305

Amino Acids

34.83

Weight (kDa)

5.14

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 1 - 143 2.1e-32 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 863
AatII GACGTC 1 cut(s) 149
Acc65I GGTACC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 39
AciI CCGC 4 cut(s) 72, 252, 280, 461
AclWI GGATC 2 cut(s) 84, 452
AcoI YGGCCR 1 cut(s) 806
AcsI RAATTY 1 cut(s) 761
AcyI GRCGYC 2 cut(s) 146, 291
AfaI GTAC 3 cut(s) 41, 312, 565
AfiI CCNNNNNNNGG 2 cut(s) 576, 733
AgsI TTSAA 6 cut(s) 206, 261, 419, 526, 899, 905
AhdI GACNNNNNGTC 1 cut(s) 86
AjiI CACGTC 2 cut(s) 46, 160
AjnI CCWGG 1 cut(s) 626
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 4 cut(s) 542, 586, 591, 779
AluI AGCT 4 cut(s) 542, 586, 591, 779
Alw26I GTCTC 3 cut(s) 50, 150, 370
AlwI GGATC 2 cut(s) 84, 452
AoxI GGCC 2 cut(s) 265, 806
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 1 cut(s) 761
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
Asp700I GAANNNNTTC 1 cut(s) 507
Asp718I GGTACC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 266, 383
AsuC2I CCSGG 1 cut(s) 578
AsuHPI GGTGA 2 cut(s) 241, 735
AvaII GGWCC 1 cut(s) 383
BalI TGGCCA 1 cut(s) 808
BanI GGYRCC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 450
BceAI ACGGC 2 cut(s) 85, 278
BciT130I CCWGG 1 cut(s) 628
BciVI GTATCC 1 cut(s) 607
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 1 cut(s) 578
BcoDI GTCTC 3 cut(s) 50, 150, 370
BfuI GTATCC 1 cut(s) 607
BisI GCNGC 3 cut(s) 252, 280, 464
BlpI GCTNAGC 1 cut(s) 587
BlsI GCNGC 3 cut(s) 253, 281, 465
Bme1390I CCNGG 2 cut(s) 578, 628
Bme18I GGWCC 1 cut(s) 383
BmeRI GACNNNNNGTC 1 cut(s) 86
BmgBI CACGTC 2 cut(s) 46, 160
BmgT120I GGNCC 2 cut(s) 266, 383
BmiI GGNNCC 2 cut(s) 41, 268
BmrFI CCNGG 2 cut(s) 578, 628
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 1 cut(s) 806
BmuI ACTGGG 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 135
Bpu1102I GCTNAGC 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 578
BsaHI GRCGYC 2 cut(s) 146, 291
BsaXI ACNNNNNCTCC 5 cut(s) 32, 131, 161, 367, 397
Bsc4I CCNNNNNNNGG 2 cut(s) 576, 733
Bse1I ACTGG 4 cut(s) 215, 516, 720, 880
Bse3DI GCAATG 1 cut(s) 495
BseBI CCWGG 1 cut(s) 628
BseGI GGATG 3 cut(s) 169, 363, 679
BseLI CCNNNNNNNGG 2 cut(s) 576, 733
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 2 cut(s) 74, 126
BseNI ACTGG 4 cut(s) 215, 516, 720, 880
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 450
BsgI GTGCAG 1 cut(s) 238
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 2 cut(s) 267, 808
BshNI GGYRCC 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 243
BsiSI CCGG 1 cut(s) 577
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 2 cut(s) 576, 733
BsmAI GTCTC 3 cut(s) 50, 150, 370
BsmBI CGTCTC 2 cut(s) 50, 150
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 2 cut(s) 267, 808
Bsp143I GATC 6 cut(s) 76, 112, 301, 395, 457, 632
Bsp1720I GCTNAGC 1 cut(s) 587
BspACI CCGC 4 cut(s) 72, 252, 280, 461
BspANI GGCC 2 cut(s) 267, 808
BspCNI CTCAG 2 cut(s) 75, 127
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 2 cut(s) 41, 268
BspPI GGATC 2 cut(s) 84, 452
BspT107I GGYRCC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 495
BsrI ACTGG 4 cut(s) 215, 516, 720, 880
BssMI GATC 6 cut(s) 76, 112, 301, 395, 457, 632
BssNI GRCGYC 2 cut(s) 146, 291
Bst2UI CCWGG 1 cut(s) 628
Bst4CI ACNGT 2 cut(s) 65, 241
BstACI GRCGYC 2 cut(s) 146, 291
BstC8I GCNNGC 1 cut(s) 777
BstDEI CTNAG 3 cut(s) 83, 135, 587
BstENI CCTNNNNNAGG 1 cut(s) 731
BstF5I GGATG 3 cut(s) 169, 363, 679
BstKTI GATC 6 cut(s) 79, 115, 304, 398, 460, 635
BstMAI GTCTC 3 cut(s) 50, 150, 370
BstMBI GATC 6 cut(s) 76, 112, 301, 395, 457, 632
BstMCI CGRYCG 1 cut(s) 243
BstNI CCWGG 1 cut(s) 628
BstSCI CCNGG 2 cut(s) 576, 626
BstV1I GCAGC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 2 cut(s) 267, 808
BtrI CACGTC 2 cut(s) 46, 160
BtsCI GGATG 3 cut(s) 169, 363, 679
Cac8I GCNNGC 1 cut(s) 777
CciI TCATGA 1 cut(s) 535
Cfr13I GGNCC 2 cut(s) 266, 383
CseI GACGC 3 cut(s) 41, 140, 299
Csp6I GTAC 3 cut(s) 40, 311, 564
CspCI CAANNNNNGTGG 2 cut(s) 460, 495
CviAII CATG 7 cut(s) 36, 354, 380, 536, 680, 685, 789
CviQI GTAC 3 cut(s) 40, 311, 564
DdeI CTNAG 3 cut(s) 83, 135, 587
DpnI GATC 6 cut(s) 78, 114, 303, 397, 459, 634
DpnII GATC 6 cut(s) 76, 112, 301, 395, 457, 632
DriI GACNNNNNGTC 1 cut(s) 86
EaeI YGGCCR 1 cut(s) 806
Eam1105I GACNNNNNGTC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 741
Eco47I GGWCC 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 731
EcoRI GAATTC 1 cut(s) 761
EcoRII CCWGG 1 cut(s) 626
EcoRV GATATC 1 cut(s) 741
Esp3I CGTCTC 2 cut(s) 50, 150
FaeI CATG 7 cut(s) 39, 357, 383, 539, 683, 688, 792
FaqI GGGAC 1 cut(s) 250
FatI CATG 7 cut(s) 35, 353, 379, 535, 679, 684, 788
FauI CCCGC 1 cut(s) 65
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 252, 280, 464
FokI GGATG 3 cut(s) 176, 350, 686
Fsp4HI GCNGC 3 cut(s) 252, 280, 464
GluI GCNGC 3 cut(s) 252, 280, 464
HaeIII GGCC 2 cut(s) 267, 808
HapII CCGG 1 cut(s) 577
HgaI GACGC 3 cut(s) 41, 140, 299
Hin1I GRCGYC 2 cut(s) 146, 291
Hin1II CATG 7 cut(s) 39, 357, 383, 539, 683, 688, 792
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HindIII AAGCTT 2 cut(s) 540, 589
HinfI GANTC 2 cut(s) 87, 196
HpaII CCGG 1 cut(s) 577
HphI GGTGA 2 cut(s) 241, 735
Hpy166II GTNNAC 3 cut(s) 28, 144, 448
Hpy188I TCNGA 5 cut(s) 50, 109, 667, 826, 886
Hpy188III TCNNGA 5 cut(s) 116, 206, 416, 479, 536
Hpy8I GTNNAC 3 cut(s) 28, 144, 448
Hpy99I CGWCG 7 cut(s) 35, 101, 113, 122, 151, 275, 293
HpyAV CCTTC 3 cut(s) 226, 672, 727
HpyCH4III ACNGT 2 cut(s) 65, 241
HpyCH4IV ACGT 4 cut(s) 45, 146, 159, 601
HpyCH4V TGCA 5 cut(s) 219, 357, 429, 436, 871
HpyF3I CTNAG 3 cut(s) 83, 135, 587
HpySE526I ACGT 4 cut(s) 45, 146, 159, 601
Hsp92I GRCGYC 2 cut(s) 146, 291
Hsp92II CATG 7 cut(s) 39, 357, 383, 539, 683, 688, 792
KpnI GGTACC 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 6 cut(s) 76, 112, 301, 395, 457, 632
Lsp1109I GCAGC 1 cut(s) 450
LweI GCATC 1 cut(s) 806
MaeII ACGT 4 cut(s) 45, 146, 159, 601
MaeIII GTNAC 2 cut(s) 65, 711
MalI GATC 6 cut(s) 78, 114, 303, 397, 459, 634
MboI GATC 6 cut(s) 76, 112, 301, 395, 457, 632
MboII GAAGA 1 cut(s) 356
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 457
MlsI TGGCCA 1 cut(s) 808
MluCI AATT 6 cut(s) 261, 452, 753, 761, 858, 864
MluNI TGGCCA 1 cut(s) 808
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 6 cut(s) 115, 130, 171, 450, 543, 689
Mox20I TGGCCA 1 cut(s) 808
MroXI GAANNNNTTC 1 cut(s) 507
MscI TGGCCA 1 cut(s) 808
MseI TTAA 3 cut(s) 401, 638, 913
MslI CAYNNNNRTG 2 cut(s) 488, 755
Msp20I TGGCCA 1 cut(s) 808
MspA1I CMGCKG 1 cut(s) 463
MspI CCGG 1 cut(s) 577
MspR9I CCNGG 2 cut(s) 578, 628
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 1 cut(s) 628
NciI CCSGG 1 cut(s) 578
NdeII GATC 6 cut(s) 76, 112, 301, 395, 457, 632
NlaIII CATG 7 cut(s) 39, 357, 383, 539, 683, 688, 792
NlaIV GGNNCC 2 cut(s) 41, 268
NmuCI GTSAC 1 cut(s) 65
PagI TCATGA 1 cut(s) 535
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 117
PctI GAATGC 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 196
PflFI GACNNNGTC 1 cut(s) 381
PkrI GCNGC 3 cut(s) 253, 281, 465
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PsiI TTATAA 1 cut(s) 863
Psp6I CCWGG 1 cut(s) 626
PspGI CCWGG 1 cut(s) 626
PspN4I GGNNCC 2 cut(s) 41, 268
PspPI GGNCC 2 cut(s) 266, 383
PsuI RGATCY 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 381
RsaI GTAC 3 cut(s) 41, 312, 565
RsaNI GTAC 3 cut(s) 40, 311, 564
RseI CAYNNNNRTG 2 cut(s) 488, 755
SaqAI TTAA 3 cut(s) 401, 638, 913
SatI GCNGC 3 cut(s) 252, 280, 464
Sau3AI GATC 6 cut(s) 76, 112, 301, 395, 457, 632
Sau96I GGNCC 2 cut(s) 266, 383
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 2 cut(s) 578, 628
SfaNI GCATC 1 cut(s) 806
SinI GGWCC 1 cut(s) 383
SmiMI CAYNNNNRTG 2 cut(s) 488, 755
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
Sse9I AATT 6 cut(s) 261, 452, 753, 761, 858, 864
SsiI CCGC 4 cut(s) 72, 252, 280, 461
StyD4I CCNGG 2 cut(s) 576, 626
TaaI ACNGT 2 cut(s) 65, 241
TaiI ACGT 4 cut(s) 48, 149, 162, 604
TaqI TCGA 4 cut(s) 79, 176, 194, 394
TasI AATT 6 cut(s) 261, 452, 753, 761, 858, 864
TauI GCSGC 2 cut(s) 254, 282
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 3 cut(s) 401, 638, 913
Tru9I TTAA 3 cut(s) 401, 638, 913
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 4 cut(s) 352, 552, 690, 754
TspGWI ACGGA 1 cut(s) 74
Tth111I GACNNNGTC 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 383
XagI CCTNNNNNAGG 1 cut(s) 731
XapI RAATTY 1 cut(s) 761
XmnI GAANNNNTTC 1 cut(s) 507
ZraI GACGTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.